WHO classification 2021 - CUHK

 
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WHO classification 2021 - CUHK
4/29/2021

      WHO classification 2021
                    H.K. Ng
       Chinese University of Hong Kong
Full ppt at http://www.acp.cuhk.edu.hk/hkng/

                         Sorry this is going to be a boring talk

                         45 minutes are not enough for the CNS classification as
                         We have many more entities than other systems
                         So there is only enough time to read through the entire
                         Classificatiion
                         Parts of the classification which do not have
                         many changes will not be dealt with.

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                     Just too many entities

                     WHO also includes a section on hereditary brain tumor syndromes

                     Some entities I have not seen myself

                     Sorry cannot illustrate everything

       WHO Classification 2021

      Imminently in print and latest June
Look out for summary in Neuro‐oncology soon
                Louis DN et al.

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    Disclaimer : Just don’t shoot the messenger

WHO 2021 – led by IARC
        Ten neuropathologists
        ‐ Brat, Dan
        ‐ Ellison, David
        ‐ Figarella‐Branger, Dominique
        ‐ Hawkins, Cynthia
        ‐ Louis, David
        ‐ Perry, Arie
        ‐ Ng, H K
        ‐ Von Deimling, Andreas
        ‐ Reifenberger, Guido
        ‐ Wesseling, Pieter

        Two clinicians
        ‐ Pfister, Stefan
        ‐ Soffietti, Riccardo

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Some general changes

• Pediatric and adult gliomas separate
• Grading changed to Arabic numerals, e.g. 1, 2,3, 4 and not I, II, III,IV
• Grading is WITHIN each tumor group
• Methylomes a desirable criteria in
• Many of the new and rare lesions diagnosable by methylation profiles
• Appreciate that some tumors are Not Elsewhere Classified (NEC)
• Integrated diagnosis as per Haarlem (2014) recommendation

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Whole genome methylation profiling

                                 Binary
                                 IDAT
                                 files
                                 (1 for red,
                                  1 for green)

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Typical report from DKFZ Molecular Classifier

                                                Methylation profiling listed as
                                                DESIRABLE criteria in WHO 2021
                                                for many entities

                                                “Histological diagnosis without
                                                Histology”

   Capper D et al. Nature 2018

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  The methylomes
  A new kind of
  “histology”

 Wong, Ng
 Modern Pathology 2021

                                                                IDH glioma, subclass 1p/19q codeleted oligodendroglioma                                GBM_RTK I
                                           A_IDH_HG             IDH glioma, subclass astrocytoma                          GBM_MES

               A_IDH                                            IDH glioma, subclass high grade astrocytoma
                                                                glioblastoma, IDH wildtype, subclass RTK I
 O_IDH
                                                                glioblastoma, IDH wildtype, subclass RTK II
                                                                glioblastoma, IDH wildtype, subclass mesenchymal

                                                                IDH mutant glioblastomas (our cohort, n=86)                                      GBM_RTK II

Figure 1. Unsupervised clustering of reference cohort samples and 85 IDH mutant glioblastomas using t-SNE dimensionality reduction. The reference cohort of the DKFZ
CNS tumor classifier includes 82 tumour and 9 non-tumour classes and they are shown as circles of different colors. The 85 primary IDH mutant glioblastomas of our
cohort clustered mainly to the (I) IDH mutant high grade astrocytomas; (2) glioblastoma, IDH wildtype, subclass RTK II and (3) subclass mesenchymal (green triangles).
Mutations of IDH in our samples were tested and confirmed by independent PCR and sanger sequencing.

              Methylomes also give you the complete cytogenetic picture of copy number variation of genes

                                                                                                               Wong, Ng. Modern Pathology 2021

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Other information obtainable from
methylomes

  • MGMT
  • 1p19q status
  • G‐CIMP status (have to work
   Out yourself)

      Pediatric gliomas
       2.1.2:      Pediatric-type diffuse low-grade gliomas
                              2.1.2.1: Diffuse astrocytoma, MYB- or MYBL1-altered
                              2.1.2.2: Angiocentric glioma
                              2.1.2.3: Diffuse low-grade glioma, MAPK-altered
                              2.1.2.4: Polymorphous low-grade neuroepithelial tumour of the young

       2.1.3:      Pediatric-type diffuse high-grade gliomas
                               2.1.3.1: Diffuse midline glioma, H3 K27M-mutant
                               2.1.3.2: Diffuse hemispheric glioma, H3 G34-mutant
                               2.1.3.3: Diffuse paediatric-type high-grade glioma, H3-wildtype and IDH-wildtype
                               2.1.3.4: Diffuse midline glioma, EGFR-mutant
                               2.1.3.5: Infant-type hemispheric glioma, H3-wildtype
       2.1.4:      Circumscribed astrocytic gliomas
                               2.1.4.1: Pilocytic astrocytoma
                               2.1.4.2: High-grade astrocytoma with piloid features
                               2.1.4.3: Pleomorphic xanthoastrocytoma
                               2.1.4.6: Subependymal giant cell astrocytoma
                               2.1.4.7: Chordoid glioma
                               2.1.4.8: Astroblastoma-MN1
       2.1.5:      Glioneuronal and neuronal tumours
                    2.1.5.1: Ganglioglioma
                    2.1.5.2: Desmoplastic infantile astrocytoma / ganglioglioma
                    2.1.5.3: Dysembryoplastic neuroepithelial tumour
                    2.1.5.4: Diffuse glioneuronal tumor with oligodendroglioma-like features and nuclear clusters
                    2.1.5.5: Papillary glioneuronal tumour
                    2.1.3.13 Diffuse leptomeningeal glioneuronal tumor
                       Many others………………………………

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          Grades 1 and 2 gliomas in children have similar prognosis

               Bandopadhayay P Pediatric Blood & Cancer 2014

                 N=4,400

Grades 3 and 4 gliomas in children have similar prognosis in children

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H3K27M
• Midline H3K27M mutant gliomas (DIPG)
• Pitfalls : may occur outside midline; usually poor prognosis

                                     6 years old female

                                     Thalamic GBM

                                     K27M-H3.3 mutations

                                   (AAG → ATG, lysine → methionine)

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“DIPG” – H3K27M mutant mid‐line glioma

                                         Cynthia Hawkins, AANP

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                                                                                  Cynthia Hawkins, AANP

Pediatric high grade gliomas IDHwt, H3wt are still poorly characterized

                                                                Cynthia Hawkins, AANP web

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Diffuse midline glioma, EGFR mutant

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Infantile gliomas are a separate group in WHO 2021

                                               2019

  Infant high grade gliomas comprise multiple subgroups
  Characterised by novel target fusions and better survivals
  Clarke M, Mackay A…….Ng HK……Jones C
  Cancer Discovery 2020

         Note : NTRK inhibitors in clinical trials

                                        Polymorphous low grade neurepithelial tumor of the young
                                        From WHO 2021

                                        About 50% BRAF mutated or have other MAPK aberrations,
                                        usually FGFR2 or FGFR3

                                                                                            WHO 2021
                           CD34

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BRAF

                    8/M
                                                 ? A form of PLNTY or pediatric low grade
                                                 Glioma with MAPK activation
                                                 Yang, Ng. Brain Pathology 2020

 Angiocentric glioma – MYB‐QKI fusion
 A Grade 1 pediatric diffuse glioma characterized by chronic intractable seizure

                                                                                   WHO 2021

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Diffuse astrocytoma, MYB or MYBL1 altered
Is a grade 1 pediatric diffusely infiltrative glioma

Previously called isomorphic glioma

                 BRAF V600E is a poor prognosticator for p‐LGG

                                                                 Lassaletta…Ng....Tarbori
                                                                 Journal of Clinical Oncology
                                                                 2017

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                               Risk stratification of pLGG into low, intermediate and high groups

                                            Low risk; n=86                                     Low risk
                                                                                               (BRAF fusion or MYB amplification

   Progression free survival
                                                                                               Intermediate risk
                                                                 p-=0.0002                     (BRAFV600E or
                                                                                               without H3F3A/TERT/BRAF/MYB alterations)
                                                                                               High risk
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WHO2021 defines DNET as a cortical, circumscribed
Glioneuronal tumor with alterations of FGFR1

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Glioneuronal tumor

       Desmoplastic infantile
       Astrocytoma / Ganglioglioma

                                     Myxoid glioneuronal tumor

                                     A tumor at septum pellucidum or periventricular
                                     region with characteristic dinucleotide putation
                                     of PDGFRA. Slow growing. Grade 1.

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Diffuse leptomeningeal glioma
Ng, Poon. Pathology 1999

May exhibit 1p loss or BRAF fusion

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    Papillary glioneuronal tumor is defined by PRKCA‐fusions

                                                                         WHO 2021

2.1.4:   Circumscribed astrocytic gliomas
                  2.1.4.1: Pilocytic astrocytoma
                  2.1.4.2: High-grade astrocytoma with piloid features
                  2.1.4.3: Pleomorphic xanthoastrocytoma
                   2.1.4.6: Subependymal giant cell astrocytoma
                  2.1.4.7: Chordoid glioma
                 2.1.4.8: Astroblastoma-MN1

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Astroblastoma is defined now by MN1‐alterations

                                                                   WHO 2021

          Prototype circumscribed glioma : pilocytic astrocytoma

          pilocytic

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                   BRAF Gene Rearrangement (Fusion)

Two normal signals (orange) plus a smaller third signal near one of the large signals

                                           PXA is characterized by
                                           BRAF mutation and CDKN2A deletion

                                                                                        BRAF V600E

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Adult diffuse gliomas

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                        Should the diagnosis of
                        glioblastoma just be
                        HISTOLOGICAL ?

           Endothelial proliferation
necrosis

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TERT promoter mutations

                                             Life history of a glioblastoma

                                               TERT is a common end point

                From Wesseling and Verhaak

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                                                                                  Li, Ng.
                                                                                  NOA 2019

CDKN2A/B homozygous deletion (FISH or methylation) : major prognosticator in IDH mutant astrocytomas
Criteria for molecular Astrocytoma Grade IV

Also Shirahata, von Deimling, ANP 2019; Yang R, Ng HK. Brain Pathology 2020

CIMPACT‐NOW Brat et al. 2020

  Adult diffuse gliomas

     • Astrocytoma, IDH mutant
       (Grades 2‐4, “IDH mut glioblastoma” discarded;
         homozygous deletion of CDKN2A/B as Grade 4 criteria for cases not
        fulfilling histology criteria)
     • Oligodendroglioma, IDH mutant and 1p19q codeleted
     • Glioblastoma, IDH wild type
       (EGFR, TERT, 7+/10‐ for cases not fulfilling histology criteria)

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But that does not mean :
• You need to do CDKN2A/B to diagnose an obvious glioblastoma which
  is IDH mutant (Wong, Ng. Modern Pathology 2021)

• You need to do EGFR or TERT or 7+/10‐ for an obvious glioblastoma
  which is IDHwt

• These are criteria for molecular glioblastoma or Grade 4 for the Grade
  2‐3 lesions which do not fulfil the histological criteria

       Giant cell glioblastoma is a variant enriched for p53 mutatipn   (Shi, Ng. Brain Pathology 2019)

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       Epitheloid glioblastoma typically has BRAF mutation

    WHO 2021                                                 BRAF

Ependymoma
•   Supratentorial ependymoma
•   Supratentorial ependymoma ZFTA (RELA) fusion‐positive
•   Supratentorial ependymoma YAP1 fusion‐positive
•   Posterior fossa ependymoma
•   Posterior fossa ependymoma Group PFA
•   Posterior fossa ependymoma Group PFB
•   Spinal ependymoma
•   Spinal ependymoma, MYCN‐amplified
•   Myxopapillary ependymoma
•   Subependymoma

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                          Posterior fossa ependymoma is the commonest
                          clinical scenario for ependymomas

PFA younger age and majority

                           Witt & Pfister Cancer Cell 2011

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Most supratentorial ependymomas are ZFTA (RELA) fusion positive   RELA
and clinically aggressive

           M/3 L frontal lobe tumor
                                                  LICAM

                                                 Or p65/RELA

    RELA‐positive ependymoma
   M/15, ST. T and QMH, 2007‐2019

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                                                    From :
                                                    Ng in Russell and Rubinstein
                                                    2006

     Spinal cord ependymomas are mostly low grade

Spinal ependymoma

  • Without MYCN : good prognosis
  • With MYCN : poor prognosis

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                                            Medulloblastoma

     `

          Medulloblastoma

Medulloblastoma, molecularly defined
• Medulloblastoma, Wnt activated
• Medulloblastoma, SHH activated and p53 wt
• Medulloblastoma, SHH activated and p53 mt
• Medulloblastoma, non‐Wnt, non‐SHH

• Medulloblastoma, histologically defined

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                        McLendon, Ng.
                        Hematology /Oncology
                        Clinics 2021

Wnt MB ‐ Beta‐catenin

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                                                                    Filamin

SHH medulloblastoma

                                                                    Yap1

    M/5. Anaplastic medulloblastoma with drop metastasis and MYC amplification

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Molecular grouping of medulloblastoma
• IHC (cannot distinguish Group 3 and Group 4)
• Nanostring transcriptomes
• Methylation profiling

• In addition
• FISH for example for MYC or MYCN or other cytogenetics required by
  your clinicians if not doing methylation profiling

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Other CNS embryonal tumors
• Atypical teratoid rhabdoid tumor (AT/RT)
• Cribriform neuroepithelial tumor
• Embryonal tumor with multi‐layered rosettes (ETMR)
• CNS neuroblastoma FOXR2 activated
• CNS tumor with BCOR internal tandem duplication

SMARCB1 (INI1) loss
• Lost in ATRT
• But also in poorly differentiated chordomas
• CRINET

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                                     Figure 2a. AT/RT
                                     M/6 months, cerebellar tumor.
                                     This area represents the
                                     area of the tumor with rhabdoid‐
                                     like cells

AT/RT, negative INI1‐staining

                                Heterozygous mutation
                                NM_003073.4:c.367C>T
                                NP_003064:p.Q123*

                                       Germline mutation of SMARCB1
                                       exon 4

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CRINET is a ventricular tumor characterized by histology and SMARCB1 mutation and INI1‐loss
Behavior is still not very certain at this stage
                                                                                                       WHO 2021

                                                                                  ETMR
                                                                                  (embryonal tumor with multi‐
                                                                                  Layered rosettes)
                                                                                  F/1, frontal lobe tumor.

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ETMR – Lin28A positive and C19MC amplifictaion

                                             All types of meningiomas
                                             as a single tumor entity with
                                             Different grades

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Mesenchymal non‐meningeal tumors ‐
selected
• Solitary fibrous tumor
• Rhabdomyosarcoma
• Intracranial mesenchymal tumor, FET‐CREB fusion positive
• CIC‐rearranged sarcoma
• Primary intracranial sarcoma, DICER‐mutant
• Ewing sarcoma

Pineal tumors
• Pineocytoma
• Pineal parenchymal tumor of intermediate differentiation
• Pineoblastoma
• Papillary tumor of the pineal gland
• Desmoplastic myxoid tumor of the pineal region, SMARCB1 mutant

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Tumors of the sellar region
• Adamantinomatous craniopharyngioma
• Papillary craniopharyngioma
• Pituicytoma, granular cell tumor and spindle cell oncocytoma
• Pituitary adenoma of PitNET
• Pituitary blastoma

                           F Stephen Vogel
    Peter Burger                                        Robin O
                                                        Barnard

                                                           S K Yee Foundation

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