Science Honours Projects 2021 - Federation University Australia

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Science Honours Projects 2021 - Federation University Australia
Science Honours Projects - 2021

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Science Honours Projects 2021 - Federation University Australia
Contents

Bachelor of Science Honours……………………. 2

How to apply for Honours…………………….…... 3

Biomedical Science………………………….…….. 4

Environmental Science……………………………. 8

Mathematical Science……………………………..                                              14

Food Science…………………………....................                                     15

Veterinary and Wildlife Science………………….                                        16

School of Science, Psychology and Sport – BSc Honours Research Projects 2021        1
Science Honours Projects 2021 - Federation University Australia
Bachelor of Science Honours

Students who excel in their undergraduate degree are eligible to apply for entry into the Bachelor of
Science Honours program. Honours is an intensive research-based program requiring an extra year of full-
time study (or 18 months part-time study) on top of your undergraduate degree.

What is Honours?
The Bachelor of Science Honours program (SZ8) is an additional fourth year of Undergraduate studies,
completed over 9 months full-time (FT), or 18 months part-time (PT). The main objective of the program is
to train students as professional research scientists.
Honours students engage in an individual research project under the close supervision of an academic
staff member with relevant expertise in their chosen field. Students also complete theoretical coursework
designed to complement their research and develop key skills in communication, critical analysis and
project management, equipping them for independent research roles in the workplace or for entry into
postgraduate research programs.
For more program information, see Honours course outline and Honours courses and assessment.

Why complete an Honours year?
For some students completing honours is the first step towards building an academic research career and
pursuing post graduate study. However, completing an Honours year also offers many benefits to those
looking to boost their marketability in an increasingly competitive job market.
Honours gives you the opportunity to:
           •    Get experience in real scientific research
           •    Extend your knowledge in a specialist field of interest
           •    Contribute new knowledge to your field (with possibility of publication)
           •    Develop workplace skills attractive to employers
           •    Use advanced techniques and equipment and broaden your technical skill set

Honours can be challenging, with a level of independence expected of students representing a significant
change from previous undergraduate courses. However, most students find that their Honours year is an
extremely rewarding experience.

School of Science, Psychology and Sport Honours Research projects are available in the following
discipline areas, as listed in this Information Booklet:
           •    Biomedical Science
           •    Environmental Science
           •    Mathematical Science
           •    Food Science
           •    Veterinary and Wildlife Science

For more information on the Bachelor of Science Honours Program, contact the Science Honours
course coordinator at your campus:

    Mt Helen Campus                                                              Gippsland Campus
        Dr Morgan Wallace                                                        Dr Phill Brook-Carter
        m.wallace@federation.edu.au                                              phillip.brook-carter@federation.edu.au
         +61 3 5327 9939                                                         +61 3 5122 6783

                                                          Berwick Campus
                                                          Dr Rob Bischof
                                                          r.bischof@federation.edu.au
                                                          +61 3 4313 7930

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                              2
Science Honours Projects 2021 - Federation University Australia
How to apply for Honours

Qualification for the Honours program requires students to have a GPA>6.0 (or equivalent) in a relevant
undergraduate degree, and the support of an academic supervisor.
In addition to completing an Online Application for entry to the Bachelor of Science (Honours) programs,
students will need to submit a completed Research Proposal Form, outlining their intended research
project which is also signed by their chosen supervisor(s).

Step 1 Find a Project and Supervisor
An Honours information session will be held as a webinar in Semester 2, which will provide you with an
introduction to the Bachelor of Science Honours program and the scope of research projects available to
students in 2021. You can also contact academic staff working in areas that interest you directly and ask
them if they would consider supervising you.
This Information Booklet contains a listing of Research projects suitable for Honours students in
2021. Note that this is not a complete list of available projects for 2021, so students are
encouraged to contact academic staff that they are interested in working with at the School
of Science, Psychology and Sport to discuss possible Honours projects.
It is a good idea to talk to a number of prospective supervisors to assess whether their research focus
aligns with your interests and whether you feel you could work well with their research group. If possible,
talk to other students in the group or past students who have worked with them as well.
Some questions to help you refine what you want to work on
           •   What aspects of your undergraduate degree have you found most interesting?
           •   Which courses did you enjoy the most?
           •   What topics or issues did you wish you could have studied in more depth?
           •   Which academic staff had a teaching style that you liked in undergraduate courses?
           •   Which academic staff are working in areas that interest you?

Step 2: Apply for Honours
FedUni students can complete an Online Application for entry into the honours program (SZ8). You will
also need to submit a completed Research Proposal Form signed by your prospective supervisor.
Students wanting to enrol in Honours at FedUni, who completed their undergraduate degree elsewhere
should contact the relevant Science Honours Program Coordinator to discuss eligibility requirements.

Step 3: Accept your offer
If you are offered a place in the honours program you need to formally accept your offer in writing. You
should also get in touch with your supervisor to discuss any additional requirements (eg ethics approvals,
laboratory safety training) for your project prior to starting your research work. Semester 1 intake typically
starts at the beginning of February, Semester 2 intake starts at the beginning of August.
Additional discipline-based information sessions may also be run, dates and details to be advised by email
to eligible students.

School of Science, Psychology and Sport Honours Scholarships
The School of Science, Psychology and Sport is offering 5 Honours Scholarships ($3,000 each)
to be awarded to applicants entering Honours in 2021. Applications will be assessed on the
applicant’s academic performance within their undergraduate degree.
For further information, contact the Science Honours course coordinator at your campus.

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                3
Science Honours Projects 2021 - Federation University Australia
Biomedical Science

Characterising immune changes in specific                                      The Y chromosome microRNA - a new paradigm of
disease settings                                                               coronary artery disease in men

Location:              Mt Helen Campus                                         Location:            Mt Helen Campus
Project Leaders:       Prof Stuart Berzins, Dr Morgan Wallace                  Project Leaders:     Prof Fadi Charchar, Prof Stephen Harrop
Email:                 stuart@fecri.org.au,                                                         (University of Melbourne)
                       m.wallace@federation.edu.au                             Email:               f.charchar@federation.edu.au
Phone:                 (03) 5334 4963 (Prof Berzins)                           Phone:               (03) 5327 6098
                       (03) 5327 9939 (Dr Wallace)
                                                                               Project description: There is a well-known “male
Project description: Comparing blood from patients with that                   disadvantage” in heart disease – men develop and die of it
of healthy people can reveal immune changes associated with                    more frequently than women. The cause of this disparity is still
disease progression. This                                                      not clear and is not explained by many traditional risk factors
type of characterisation is                                                    such as diet. We have shown in a recent that the male sex Y
being      considered     for                                                  chromosome is associated with increased risk of heart disease.
patients with blood cancers                                                    The current proposed project will utilise molecular techniques
such as multiple myeloma,                                                      to measure the expression of Y genes in patients with CAD.
respiratory diseases such                                                      This may improve our understanding of why men are more
as asthma, and for patients                                                    prone to heart disease and could help to develop sex-specific
with virus infections. This                                                    methods for prevention and treatment of heart disease in the
approach provides useful                                                       future.
insights into normal immune                                                    Key words: genetics, human disease
function and may identify novel prognostic markers that can be
used to improve diagnosis and assist with the selection of
appropriate treatment strategies for patients.
Key words: immunology, T cells, immune responses, cancer,                      Using RNA-Seq to determine the long-non coding
viruses                                                                        RNA profile of hypertensive human kidneys

                                                                               Location:            Mt Helen Campus
                                                                               Project Leaders:     Prof Fadi Charchar,
Characterising the function of innate-like T cells                                                  Dr Maciej Tomaszewski (University of
                                                                                                    Manchester, UK)
Location:              Mt Helen Campus                                         Email:               f.charchar@federation.edu.au
Project Leaders:       Prof Stuart Berzins, Dr Morgan Wallace                  Phone:               (03) 5327 6098
Email:                 stuart@fecri.org.au,
                       m.wallace@federation.edu.au                             Project description: Hypertension is the number one risk
Phone:                 (03) 5334 4963 (Prof Berzins)                           factor for many cardiovascular diseases. It is not clear which
                       (03) 5327 9939 (Dr Wallace)                             genes and transcripts are association with increased risk of
                                                                               hypertension. Our hypothesis is that non-coding RNA or/and
Project description: We are interested in studying the                         the aberrant expression of long-non coding RNA (exciting new
response of innate like T cells to different forms of stimulation              RNA molecules previously thought of as JUNK RNA) may be
to better understand how they function in different disease                    one of the drivers. We will be using next generation sequencing
settings. This project will stimulate T cells isolated from human              and a range of cutting-edge technologies to determine which
blood and tissues and analyse their gene expression,                           long non-coding RNA are expressed on the human Kidney.
proliferation and cytokine production responses to determine
                                                                               Key words: genetics, human disease
how they influence immune responses.
Key words: immunology, T cells, immune responses, cancer,
viruses
                                                                               Self-assembling peptides as building blocks for 3D
                                                                               printable hydrogels
Understanding how innate like T cells are activated                            Location:            Mt Helen Campus
                                                                               Project Leader:      Dr Benjamin Long
Location:              Mt Helen Campus                                         Email:               bm.long@federation.edu.au
Project Leaders:       Prof Stuart Berzins, Dr Morgan Wallace                  Phone:               (03) 5327 9452
Email:                 stuart@fecri.org.au,
                       m.wallace@federation.edu.au                             Project description: Short self-assembling peptides have
Phone:                 (03) 5334 4963 (Prof Berzins)                           been shown to be useful building blocks for self-assembled
                       (03) 5327 9939 (Dr Wallace)                             hydrogels. This project aims to make enzymatically and
                                                                               spontaneously cross-linkable peptides for 3D printing hydrogel
Project description: T cells need to interact with antigen                     implants that mimic the extracellular matrix. These hydrogels
presenting cells to become activated. This project aims to                     can be tuned for anticancer properties, stroke rehabilitation and
identify novel cancer antigens that are capable of activating                  neuron growth promotion. In this project you will become
innate like T cells. Understanding what antigens are being                     familiar with solid phase peptide synthesis, organic synthesis
recognised in the cancer environment and the signalling that                   and a range of chemical characterisation techniques (IR, UV
takes place between APCs and T cells may allow us to develop                   and NMR Spectroscopy; HPLC-MS; Small Angle X-ray
therapies to either promote or suppress immune responses.                      Scattering)
Key words: immunology, T cells, immune responses, cancer,                      Key words: hydrogels, peptides
viruses

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                  4
Science Honours Projects 2021 - Federation University Australia
Biomedical Science (continued)

The role of zinc in cell signalling                                            Treatment of atherosclerosis after renal
                                                                               denervation in mice
Location:              Mt Helen Campus
Project Leaders:       A/Prof Mark Myers, Dr Scott Nankervis                   Location:            Mt Helen Campus
Email:                 m.myers@federation.edu.au                               Project Leader:      Dr Yutang Wang
Phone:                 (03) 5327 9291                                          Email:               Yutang.wang@federation.edu.au
                                                                               Phone:               (03) 5327 9394
Project description: Insulin resistance in muscle, liver and fat
tissues is an underlying cause of diabetes. While calcium ions                 Project description: Hypertension is a major risk factor for
have long been recognized as second messengers in cells, a                     cardiovascular diseases, and decreasing blood pressure can
similar role for zinc has only recently emerged. Dysfunctional                 save lives. Disconnecting the nerves in the kidney (renal
zinc signalling has been associated with important diseases                    denervation) has shown to low pressure in humans. However,
including diabetes, obesity, cardiovascular disease and                        renal denervation may also increase atherosclerosis, a disease
cancer. Our previous studies have shown that insulin causes a                  associated with inflammation. This project, funded by an
transient increase in the concentration of free zinc ions in                   NHMRC project grant, will investigate whether inhibition of
muscle cells. Understanding how this occurs may reveal new                     inflammation by atorvastatin and aspirin decreases
ways of treating diabetes. The project will use genetic                        atherosclerosis after renal denervation in mice. This project
manipulation of the expression of genes involved in zinc control               involves surgery in mice, blood pressure measurement,
and confocal microscopy imaging of live cells and intracellular                histology, immunohistochemistry and biochemical analysis.
zinc sensors to work out how zinc signalling is controlled.
Techniques will include cell biology, advanced live cell                       Key words: atherosclerosis, heart hypertrophy, abdominal
microscopy, cell transfection to manipulate gene expression,                   aortic aneurysm, cholesterol efflux
and qPCR.
Key words: zinc, diabetes, human disease
                                                                               The effect of antihypertensive drugs on cholesterol
                                                                               efflux

                                                                               Location:            Mt Helen Campus
                                                                               Project Leader:      Dr Yutang Wang
                                                                               Email:               Yutang.wang@federation.edu.au
                                                                               Phone:               (03) 5327 9394

                                                                               Project description: Atherosclerosis is the major underlying
                                                                               mechanism for stroke and heart attack. Treatment of
                                                                               atherosclerosis can protect us from these diseases.
                                                                               Atherosclerosis is characterised by the build-up of cholesterol
                                                                               in the arteries. However, most research on atherosclerosis
Novel pancreatic micro-peptides encoded by small                               focuses on inflammation. One under-investigated area for
open reading frames (sORFs) in “non-coding” RNA                                atherosclerosis is the imbalance of cholesterol in the
                                                                               arteries. This project will investigate the effect of several
                                                                               antihypertensive drugs, which can inhibit atherosclerosis, on
Location:              Mt Helen Campus
                                                                               cholesterol efflux from aortic smooth muscle cells. The
Project Leaders:       A/Prof Mark Myers, Dr Scott Nankervis
                                                                               techniques involved include cell culture, confocal microscopy,
Email:                 m.myers@federation.edu.au
                                                                               biochemical analysis, and quantitative-PCR.
Phone:                 (03) 5327 9291
                                                                               Key words: atherosclerosis, hypertension, cholesterol efflux
Project description: The pancreatic islets of Langerhans
produce many important regulatory peptides including insulin
and glucagon and numerous other peptides that also modulate
metabolic control. Over recent years there has been an                         Functionalised peptides for the detection of
explosion in the study of non-coding RNA e.g. long non-coding                  pyrophosphate in biological samples
RNA or lncRNA and this is uncovering a whole new level of
genomic regulation. More recently it has become clear that a                   Location:            Mt Helen/Gippsland Campus
small proportion of lncRNA actually does encode small                          Project Leader:      Dr Benjamin Long, Dr David Smith
proteins, or micro-peptides, which also have biological                        Email:               bm.long@federation.edu.au
importance. We have discovered a lncRNA expressed in a                         Phone:               (03) 5327 9452
pancreatic islet cell line that potentially encodes a peptide that
modulates insulin activity. The project will use bioinformatics                Project description: Solid phase peptide synthesis allows for
and molecular biology to characterise lncRNA and proteomics                    rapid prototyping of molecules for the binding and detection of
to identify encoded micropeptides. Techniques will include                     pyrophosphate. The detection of pyrophosphate could allow for
PCR, cDNA sequencing, cell transfection, and liquid                            rapid diagnosis of diseases such as pseudogout and
chromatography and mass spectrometry to identify                               renal/vascular calcification; as well as being a potential probe
micropeptides..                                                                for cell viability. In this project you will become familiar with
Key words: diabetes, micropeptides, human disease                              solid phase peptide synthesis, organic synthesis and a range
                                                                               of chemical characterisation techniques (IR, UV and NMR
                                                                               Spectroscopy; HPLC-MS).
                                                                               Key words: detection, host-guest chemistry, diagnostics,
                                                                               peptides

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                  5
Science Honours Projects 2021 - Federation University Australia
Biomedical Science (continued)

Transcriptomics study of Host Parasite Interactions                            DNA damage repair pathways and mutagenesis

Location:              Gippsland Campus                                        Location:             Gippsland Campus
Project Leader:        Dr Phillip Brook-Carter                                 Project Leader:       Dr Gregory Davis
Email:                 phillip.brook-carter@federation.edu.au                  Email:                greg.davis@federation.edu.au
                                                                               Phone:                (03) 5122 8054
Project description: The projects on offer will focus on the
analysis of the interactions that take place between the                       Project description: DNA damage repair contributes to
parasite Giardia Duodenalis and the host intestinal epithelial                 genomic stability in all eukaryotes. Due to this, the pathways
cells in an attempt to further the understanding of the                        associated with DNA damage repair are highly conserved from
mechanisms of parasitism that lead to giardiasis. Projects will                yeast through to humans. While these are well characterised,
focus on the generation and / or analysis of transcriptomic data               the recruitment and maintenance of these repair mechanisms
representing host cell responses to Giardia infection, as well                 is largely unknown. This project will use the multicellular model
as the transcriptome of the parasite itself during parasitism. We              organism, Caenorhabditis elegans, to explore key genes
have already identified thousands of gene transcription                        required for repairing DNA damage and their contribution to
changes in host cells during parasitism and we will explore this               maintaining chromosomal integrity in early embryonic events.
area more closely in individual projects.                                      This project will involve several approaches including genetics,
There are up to 2 projects available (upon discussion) that                    immunohistochemistry, cloning and fluorescence microscopy.
would suit both molecular biologists and / or those with a desire              Key words: DNA damage, genome, mutagenesis
to utilise bioinformatics on complex data sets.
Key words: Giardia, Transcriptomics, Bioinformatics

                                                                               The role of an eosinophil-specific galectin
                                                                               (galectin-14) in allergic airway inflammation
Germline specific small non-coding RNAs and
epigenetic control                                                             Location:             Berwick/Gippsland/Mt Helen Campus
                                                                               Project Leaders:      Dr Rob Bischof, A/Prof David Piedrafita,
Location:              Gippsland Campus                                                              Dr Benjamin Long
Project Leader:        Dr Gregory Davis                                        Email:                r.bischof@federation.edu.au;
Email:                 greg.davis@federation.edu.au                                                  david.piedrafita@federation.edu.au;
Phone:                 (03) 5122 8054                                                                bm.long@federation.edu.au
                                                                               Phone:                (03) 4313 7930
Project description: Small non-coding RNAs are short
stretches of RNA which are associated with regulating gene                     Project description: Members of the galectin family have
expression at the post-transcriptional level (e.g., microRNAs),                been shown to mediate a variety of important cellular functions
but also guard the genome against viruses, pseudogenes and                     including inflammation and immune responses through binding
cryptic loci. This project will utilise the model organism                     and crosslinking with glycoproteins. Galectin-14 was identified
Caenorhabditis elegans to explore how specific subgroups of                    in sheep and is elevated in the mucus of asthmatic airways,
small RNAs contribute to the development of viable germ cells                  similar to its human homologue galectin-10. This project will
that are free from genomic lesions, mutations, and insertions.                 focus on the role of galectin-14 in mucus thickening, which is
This requires analysis of the mechanisms that control stem cell                known to contribute to fatal asthma, and whether targeted
quiescence through to the early stages of embryogenesis and                    galectin inhibition can alter the properties of this mucus. Using
will apply a variety of techniques including genetics,                         a sheep model of allergic asthma, airway mucus samples will
epigenetics (histone analysis), molecular biology and                          be collected and assessed for galectin-14 content and
fluorescence microscopy.                                                       viscoelastic properties. In vitro experiments will examine the
Key words: DNA damage, genome, RNA, reproduction                               function of galectin-14 in mucus viscosity and eosinophil
                                                                               degranulation. Techniques to be used will include Western blot,
                                                                               immunology and rheology. Outcomes of this work will provide
                                                                               further insights into potential therapeutic targets to treat allergic
                                                                               diseases.
                                                                               Key words: galectin-14, mucus viscosity, allergic airway
                                                                               disease

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                      6
Science Honours Projects 2021 - Federation University Australia
Biomedical Science (continued)

Characterisation of ACE2 expression in the lungs                               A sheep model of chronic obstructive pulmonary
                                                                               disease (COPD)
Location:              Berwick/Gippsland Campus
Project Leaders:       Dr Rob Bischof, A/Prof David Piedrafita                 Location:            Berwick/Gippsland Campus
Email:                 r.bischof@federation.edu.au;                            Project Leaders:     Dr Rob Bischof, A/Prof David Piedrafita,
                       david.piedrafita@federation.edu.au                                           Dr Andrew Davies (Monash University)
Phone:                 (03) 4313 7930                                          Email:               r.bischof@federation.edu.au;
                                                                                                    david.piedrafita@federation.edu.au
Project description: Angiotensin-converting enzyme 2                           Phone:               (03) 4313 7930
(ACE2) is the cellular receptor for the severe acute respiratory
syndrome coronavirus SARS-CoV-2 (also known as COVID-                          Project description: Chronic obstructive pulmonary disease
19). The ACE2 receptor/protein is expressed in the upper and                   (COPD) is a chronic inflammatory disease of the airways.
lower respiratory tract and                                                    Sheep have similar lung size and physiology to that of humans
plays a critical role in                                                       and thus represent a suitable large animal preclinical model for
covid-19 infection and                                                         respiratory studies. This project will provide the opportunity for
transmission. With lungs                                                       a more ‘realistic’ large animal model that can be used to better
similar to human lungs,                                                        understand how COPD develops and how we can effectively
sheep        are      widely                                                   treat the disease with new therapies. Techniques will include
recognised as a good                                                           whole-animal physiology and cell and tissue immune studies.
translational model for
                                                                               Key words: COPD, translational model, sheep
human             respiratory
diseases. This study will examine cellular localisation and
tissue distribution of the ACE2 protein in the sheep respiratory
tract, using molecular, biochemical and immunological
techniques. This work may help to clarify potential targets for
the development of more effective antiviral therapies against
COVID-19.
Key words: ACE2 receptor, COVID-19, sheep airways

                                                                               Determining the age of infant gastrointestinal
Functional and phenotypic characterisation of
                                                                               pathogen colonisation in Papua New Guinea
airway macrophages
                                                                               Location:            Berwick/Gippsland Campus
Location:              Berwick/Gippsland Campus                                Project Leaders:     Dr Richard Bradbury,
Project Leaders:       Dr Rob Bischof, A/Prof David Piedrafita                                      A/Prof Andrew Greenhill
Email:                 r.bischof@federation.edu.au;                            Email:               r.bradbury@federation.edu.au;
                       david.piedrafita@federation.edu.au                      Phone:               (03) 5327 6584
Phone:                 (03) 4313 7930
                                                                               Project description: Gastrointestinal pathogens can cause
Project description: Airway macrophages are prominent                          considerable illness and potentially death in children,
immune cells that are known to play an important role in                       particularly in the first year of life. The greatest impacts on
healthy and diseased lungs. Macrophage M1/M2 polarisation                      health occur in low-income and middle-income countries,
and functional differentiation is affected by a range of stimuli,              where basic nutrition is lower and risk of infection higher than
but we know very little about the ’altered’ state of macrophages               in high income countries. We have conducted a preliminary
in the context of airway disease. The aim of these studies is to               study to investigate the development of the gut microbiota in
examine and better understand the characteristics of airway                    infants, and how that collates with
macrophages in healthy and inflamed lung tissues. This project                 carriage of pathogens. A cohort of
will include immunohistology, microscopy, immunology and                       `20 infants from the highlands of
cell biology techniques.                                                       Papua New Guinea have had faecal
Key words: airway macrophages, inflammation                                    samples collected monthly over the
                                                                               first 12 months of life. Faecal
                                                                               samples have also been collected
                                                                               from mothers of infants. This study
                                                                               will focus on gastrointestinal
                                                                               parasites. Faecal samples will be
                                                                               tested for the presence of targeted
                                                                               parasites          using        real-time
                                                                               polymerase          chain       reaction.
                                                                               Outcomes of the study will be a) age
                                                                               of first infection of specific parasites;
                                                                               b) determine correlation between
                                                                               mother’s infection status and
                                                                               age/likelihood of infant infection;
                                                                               and c) correlation between general
                                                                               health status of infant and parasite
                                                                               infection history.
                                                                               Key words: parasites, infant health, global health, nutrition,
                                                                               lab diagnostics

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                   7
Science Honours Projects 2021 - Federation University Australia
Environmental Science

Biodiversity of insect decomposers in Kosciusko                                Climatological characteristics of tropical cyclone
NP                                                                             rainfall in the Pacific Islands

Location:              Mt Helen Campus                                         Location:            Mt Helen Campus
Project Leader:        Dr Philip Barton                                        Project Leader:      Dr Savin Chand
Email:                 ps.barton@federation.edu.au                             Email:               s.chand@federation.edu.au
Phone:                 (03) 5327 6868                                          Phone:               (03) 5327 6901

Project description: An exciting research project is currently                 Project description: Pacific island countries have high
underway examining the biodiversity of insect and vertebrate                   concentrations of settlements in close proximities to coastlines.
scavengers found at deer and kangaroo carcasses in                             These communities are highly vulnerable to extreme tropical
Kosciusko National Park. This project will look at the flies and               cyclone rainfalls, and at present there is little quantitative
beetles collected from carcasses, and to answer questions                      information on how these risks have changed over the past
about seasonal changes in important species. There is scope                    decades and will change under a warmer climate. The
to conduct field work in the mountains, as well as learn new                   frequency and magnitude of tropical cyclones are likely to
skills in insect identification in the laboratory. Work will be done           change and so are the risks they pose for coastal communities
in collaboration with experts at Federation University and the                 and infrastructure. This project will emphasise on magnitude-
University of Sydney.                                                          frequency relationship of tropical cyclone rainfall on selected
Key words: ecosystem function, insect, carrion, scavengers,                    Pacific island countries. Understanding the impact of climate
Kosciusko NP                                                                   change on the magnitude of tropical cyclone rainfalls provides
                                                                               one indication of conditions under a changed climate, but it is
                                                                               also useful to understand the expected changes in the
                                                                               frequency of extreme rainfalls.
Effect of artificial light at night on insects as food
for fish and birds at Lake Wendouree

Location:              Mt Helen Campus
                                                                               Downscaling bushfire conditions to the station-
Project Leaders:       Dr Philip Barton, Dr Penelope                           scale in regional Victoria
                       Greenslade, Dr Teresa Jones (University
                       of Melbourne)                                           Location:            Mt Helen Campus
Email:                 ps.barton@federation.edu.au;                            Project Leader:      Dr Savin Chand
                       p.greenslade@federation.edu.au                          Email:               s.chand@federation.edu.au
Phone:                 (03) 5327 6868; (03) 5327 6205                          Phone:               (03) 5327 6901

Project description: There is considerable evidence                            Project description: Climate models are very useful tools to
accumulating on the deleterious effects of artificial lights at                understand how climate change may affect bushfire conditions
night on wildlife. This has recently been emphasised in the                    in Australia. However, due to their coarse resolution and other
press and elsewhere on the damage to bogong moth                               inherent deficiencies (such as parametrization issues),
populations along their migratory route to montane areas                       resolving the station-scale changes in the climate conditions is
where they aestivate and provide food for the mountain pygmy                   problematic. The main emphasis of this project is to downscale
possum. Lake Wendouree is the most important habitat in                        climate model output to the station-scale in order to better
Ballarat for aquatic insects that, as larvae, are food for fish and            understand the changes at local-scale. Several case studies
birds     and     as                                                           will be used, utilising data from regional and remote locations
adults      are     a                                                          in Victoria.
resource for bats
as well as some
birds. There is a
plan to place                                                                  Long-term changes in tropical cyclone landfall
artificial lights at                                                           over Australia
20 m intervals all
around          lake                                                           Location:            Mt Helen Campus
Wendouree         for                                                          Project Leader:      Dr Savin Chand
the benefit of                                                                 Email:               s.chand@federation.edu.au
runners at night. It has been observed that the existing trial                 Phone:               (03) 5327 6901
lights attract large numbers of flying insects at certain times of
the year with the result that massive deaths occur from the heat               Project description: Tropical cyclones are one of the costliest
and insect debris that accumulates under them which has even                   natural disasters affecting coastal communities around tropical
been observed smouldering. It is proposed that this Honours                    Australia. However, due to quality and quantity issues
work would involve sampling flying insects both at lights and                  surrounding tropical cyclone database and the presence of
where there are no lights in close proximity to the lake. The                  large variability from natural sources at multiple timescale, it is
method to be used would be yellow sticky cards. If the results                 difficult to ascertain how TC characteristics have changed over
show a significant difference between catches at lights                        Australia. This project utilises results from climate model
compared to away from lights, it is planned that they will be                  simulations to examine high-impact features of our past and
submitted to local councils for consideration in future lighting               future tropical cyclone activity over Australia. In particular, we
plans in the city.                                                             will examine model-derived TCs for past several decades over
Key words: insects, artificial lights, fish, birds, bats                       Australia and determine how the landfall characteristics of
                                                                               tropical cyclones have changes over the coastal regions.

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                    8
Science Honours Projects 2021 - Federation University Australia
Environmental Science
(continued)

Statistical assessment of tropical cyclone intensity                           The vegetation history of Enfield - what does
from climate models                                                            Dereel Swamp tell us?

Location:              Mt Helen Campus                                         Location:            Mt Helen Campus
Project Leader:        Dr Savin Chand                                          Project Leader:      Prof Peter Gell
Email:                 s.chand@federation.edu.au                               Email:               p.gell@federation.edu.au
Phone:                 (03) 5327 6901
                                                                               Project description: Dereel Swamp is a large, seasonal
Project description: Over the past few years, our                              wetland in the Enfield Forest. While there have been numerous
understanding of tropical cyclones has improved considerably                   records of vegetation change revealed from the lakes of
through improvements in climate model simulations of ocean                     western Victoria, none have come from wetlands within the
and atmospheric processes. However, there are still                            forested uplands. This study promises to reveal how vegetation
reservations around model simulation of tropical cyclone                       responded to past climate change, how fire-vegetation
intensities, which need very fine model resolution to be                       dynamics evolved in the millennia before European arrival, and
explicitly resolved. Such fine-resolution simulation is difficult              how European settlement modified the regional landscape.
due high computation cost, as well as issues with model                        Key words: water quality, pollen, diatoms, climate change, fire
parametrization. Regardless, cutting-edge mathematical and
statistical techniques can now provide opportunities to
examine high-impact features of tropical cyclones – such as
tropical cyclone intensity – through drawing “links” with large-               Wastewater treatment and the state of the
scale environment in which tropical cyclones form. The main
emphasis of this work is to examine the relationship between
                                                                               Yarrowee River
tropical cyclone intensity and several large-scale features, and
develop statistical models to assess changes in cyclone                        Location:            Mt Helen Campus
                                                                               Project Leader:      Prof Peter Gell
intensity in current and future climate scenarios.
                                                                               Email:               p.gell@federation.edu.au

                                                                               Project description: The Yarrowee River is important
                                                                               regionally as it has a guaranteed flow. Its condition is
Spatial variations in the seed ecology, effect of                              compromised by the release of treated wastewater from ponds.
elevated CO2 and effect of soil moisture on                                    This project will use water quality monitoring, and diatom-
agricultural and environmental weeds                                           based biomonitoring, to examine seasonal variation in the
                                                                               nutrient status of the River, with a view to informing the next
Location:              Mt Helen Campus                                         stage of the Yarrowee Corridor plan of the City of Ballarat.
Project Leader:        Prof S. K. Florentine (Florry)
                                                                               Key words: water quality, diatoms, eutrophication
Email:                 s.florentine@federation.edu.au
Phone:                 (03) 5327 9231

Project description: One of the most challenging issues in
natural resource management is the control of elevated or
unbalanced populations of weed species. Although substantial
financial and other resources have been directed towards the
control of some weeds, natural resource management
agencies in Australia continue to struggle with who or what
management. Invasive species tend to adapt to new areas so
overcoming any environmental limitations. Knowledge of the
ecology of weeds is essential for the selection and
development of control strategies. Such information is also
needed to ensure appropriate management of fragile                             Lake Cartcarrong: relative impact of people and
ecosystems which might be prone to invasion, particularly in
the light of future climatic changes. This project aims to collect
                                                                               climate
empirical data on spatial variations in seed ecology, effect of
                                                                               Location:            Mt Helen Campus
elevated CO2and water availability on key environmental and
                                                                               Project Leader:      Prof Peter Gell
agricultural weeds. Australian environments are subject to El
                                                                               Email:               p.gell@federation.edu.au
Niño–Southern Oscillation (ENSO) and, as a result, drought,
fire, and flood may occur at unpredictable intervals. Under this
                                                                               Project description: Lake Cartcarrong is among few volcanic
scenario, there is a high probability that weeds species will
                                                                               plains wetlands that have not been analysed for climate
increase in abundance, significantly impacting on community
                                                                               change over time. Situated in the dairy country of western
composition and ecosystem function. It is essential to
                                                                               Victoria, it offers an opportunity to contrast the relative impact
understand how all species will respond to elevated CO2 and
                                                                               of a changing climate and landscape development on wetland
water availability. To date, very limited studies have been
                                                                               condition over centuries.
conducted and thus a comprehensive study on these issues is
needed. This research would link ecological understanding of                   Key words: water quality, pollen, diatoms, climate change, fire
current variations in different populations and predict how this
aggressive species would respond to future climatic variations
in particular elevated CO2 and water availability. This research
will address critical issues affecting Australia and equivalent
systems in other parts of the world.

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                   9
Environmental Science
(continued)

Barmah Lake: Understanding the Natural                                         Management of native grassland remnant reserves
ecological character of a Ramsar wetland                                       for maintenance of native invertebrate diversity

Location:              Mt Helen Campus                                         Location:            Mt Helen Campus
Project Leader:        Prof Peter Gell                                         Project Leaders:     Dr Nick Schultz, Dr Penelope Greenslade
Email:                 p.gell@federation.edu.au                                Email:               n.schultz@federation.edu.au;
                                                                                                    p.greenslade@federation.edu.au
Project description: Barmah Lake is a Ramsar listed wetland                    Phone:               (03) 5327 9681; (03) 5327 6205
of international significance. Fossil remains within sediments
records will provide evidence of its natural character prior to                Project description: There are a fairly large number of native
river regulation and how it has changed through time since.                    grassland reserves within 50 km of Ballarat under the
This will inform plans for the local CMA and the Yorta Yorta                   management of the Ballarat Environmental Network. They are
people.                                                                        of varying sizes and under different types of management. For
Key words: water quality, diatoms, pollen, MDB wetlands, fire                  instance, some have been burnt using local indigenous
                                                                               methods others have been manage to enhance indigenous
                                                                               food plants and/or control weeds. Native grasses are a habitat
                                                                               for a surprisingly large number of endemic species, even
                                                                               endemic genera of invertebrates that are restricted to certain
                                                                               grass genera such as Themeda, Danthonia and the like. Until
                                                                               now the conservation status and protection of this part of the
                                                                               native grass fauna has received no attention. This honours
                                                                               project will involve sampling a number of these reserves for
                                                                               invertebrates to investigate the effect of size of reserve,
                                                                               management and lack of weeds on this fauna. Methods will
                                                                               include suction sampling, sweeping and pitfall trapping. It is
                                                                               anticipated that the results will make an important contribution
                                                                               to the future management of native grassland in Victoria.
                                                                               Key words: conservation, indigenous burning, native
                                                                               grasslands, invertebrates
Bioaccumulation and effect of emerging
contaminants in the environment

Location:              Mt Helen/Gippsland Campus
Project Leader:        Dr Benjamin Long, Dr Nick Schultz,
                       Dr David Smith
Email:                 bm.long@federation.edu.au
Phone:                 (03) 5327 9452

Project description: Emerging contaminants such as
Pharmaceuticals, PFAS and microplastics are known to be
discharged to the environment. Little is known about the
concentrations of these contaminants in the Australian                         Restoration success of native grasslands
environment and their penetration through the food web. In this
project you will contribute to the characterisation of the problem             Location:            Mt Helen Campus
and help measure the effects of these contaminants on the                      Project Leaders:     Dr Nick Schultz, Dr Penelope Greenslade
environment (through environmental sampling and or                             Email:               n.schultz@federation.edu.au;
microcosm studies). You will become familiar with field                                             p.greenslade@federation.edu.au
sampling techniques, solid phase extraction (SPE and                           Phone:               (03) 5327 9681; (03) 5327 6205
QuEChERS) and HPLC-MS/MS.
Key words: pharmaceuticals, emerging contaminants,                             Project description: Environmental offsets are a key tool for
detection                                                                      the management and conservation of biodiversity in Victoria,
                                                                               but we do not adequately understand how well we can improve
                                                                               and restore biodiversity at offset sites. In particular, we have a
                                                                               poor understanding of how invertebrate communities change
                                                                               with restoration efforts. This project will work in collaboration
                                                                               with industry to sample the invertebrates and vegetation of
                                                                               grassland offset sites in various stages of restoration, as well
                                                                               as high-quality reference sites. The project will ask how well
                                                                               restored sites reflect the condition and composition of high-
                                                                               quality grasslands, and will consider the rate at which
                                                                               biodiversity improvements proceed. The main site is a 95 Ha
                                                                               Northern Grassland reserve that is an offset for Boral Cement
                                                                               Company. The project will provide vital data on outcomes of
                                                                               biodiversity offsetting and may contribute directly to
                                                                               Environmental Management Plans for endangered grassland
                                                                               communities.
                                                                               Key words: native grasslands, invertebrates

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                  10
Environmental Science
(continued)

Gold containing fluorescent metallo-hydrogels                                  Living Bung Yarnda (Lake Tyers) environmental
                                                                               stewardship plan
Location:              Gippsland Campus/Mt Helen
Project Leaders:       Dr David Smith, Dr Benjamin Long                        Location:            Gippsland Campus
Email:                 d.smith@federation.edu.au;                              Project Leader:      Dr Jess Reeves
                       bm.long@federation.edu.au                               Email:               j.reeves@federation.edu.au
Phone:                 (03) 5122 6023                                          Phone:               (03) 5327 9049

Project description: This project will explore the creation of                 Project description: This project involves both the
gold-containing fluorescent metallo-hydrogels. You will                        development of an integrated citizen science environmental
investigate the optimal conditions required for gelation to occur,             program and analysis of the community and project
and how the relative proportion of the components influences                   development itself. The environmental aspect will include a
fluorescent properties, and thermal and mechanical stability.                  review of existing monitoring programs including water quality,
You will characterise the gels through various techniques                      waterbugs, fish, birds, vegetation and mammal scats and
including UV-vis and fluorescence spectroscopy, FT-IR                          scratchings. A database will be developed, specific to Lake
spectroscopy, dynamic scanning calorimetry, Rheology and                       Tyers, but contributing to larger, extant monitoring programs. It
small angle X-ray scattering.                                                  will also involve recruitment and training of volunteer
Key words: metals, hydrogels, fluorescence                                     participants and analysis of the first 6 months of data collected,
                                                                               to be presented at a community forum. The social science
                                                                               aspect of the project will map the process of recruitment,
                                                                               engagement and community outreach of the program, beyond
Sensing arrays for organic contamination in                                    the participants. It will also map the environmental values of
surface water and groundwater                                                  the various interest groups around Lake Tyers, to assist in
                                                                               development of the Environmental Stewardship program.
Location:              Gippsland Campus/Mt Helen
Project Leaders:       Dr David Smith, Dr Benjamin Long
Email:                 d.smith@federation.edu.au;
                       bm.long@federation.edu.au
Phone:                 (03) 5122 6023

Project description: Sensing arrays use several non-
selective probes in combination to create a unique finger-print
response to an analyte or range of analytes. This project aims
to create a sensing array for the detection of organic
contaminants (artificial sweeteners, pharmaceuticals, PFAS).
This will be developed to quantify concentrations of common
organics pollutants in surface water and ground water as an
                                                                               Ecology and Water Chemistry of the Morwell
indicator of wastewater contamination. The project would
involve time in the laboratory and data analysis.                              Wetlands
Key words: sensing array, detection, water                                     Location:            Gippsland Campus
                                                                               Project Leader:      Dr Jess Reeves
                                                                               Email:               j.reeves@federation.edu.au
                                                                               Phone:               (03) 5327 9049
Palaeoecology of Lake Reeve
                                                                               Project description: This project will look at the seasonal
Location:              Gippsland Campus                                        water quality variability and ecology of the Morwell Wetlands.
Project Leader:        Dr Jess Reeves                                          Depending on your interest, the project can either focus on the
Email:                 j.reeves@federation.edu.au                              flora (aquatic vegetation, algal communities) or the fauna
Phone:                 (03) 5327 9049                                          (invertebrate assemblages) of the wetlands. Sampling will be
                                                                               undertaken in March-April and again in August-September and
Project description: This project will look at sediment cores                  related to both climatic events and discharge regimes of the
from the Lake Reeve wetlands to look at changes in ecology                     local industries. There is scope to improve the ecological
and water quality over a longer (decadal-centennial) time                      values of Morwell Wetlands, so this project will provide a
scale. Depending on your interest, you may focus on sediment                   ‘before’ study, to determine the current condition and variability
chemistry or preserved ecology, such as macroinvertebrates                     of the wetland system, prior to changes in the flow of the
or diatoms. There is also the possibility to visit the Australian              Morwell, in light of the mine site rehabilitation project.
Nuclear Science and Technology Organisation (ANSTO) to
undertake iTRAX sediment chemistry sampling and dating of
the core material. This project will determine the natural
conditions and variability of the wetland complex prior to major
impacts in the catchment, such as channel diversion and the
significant industrial and urban activity in the region.
Key words: wetlands, ecology, climate change, rehabilitation,
water chemistry

                                                                               Key words: wetlands, ecology, climate change, rehabilitation,
                                                                               water chemistry

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                  11
Environmental Science
(continued)

Efficacy of Traralgon Artificial Wetlands                                      Lichens as indicators of ecosystem functionality in
                                                                               revegetated forests
Location:              Gippsland Campus
Project Leader:        Dr Jess Reeves                                          Location:            Gippsland/Berwick Campus
Email:                 j.reeves@federation.edu.au                              Project Leaders:     Dr Simone Louwhoff,
Phone:                 (03) 5327 9049                                                               A/Prof Wendy Wright
                                                                               Email:               s.louwhoff@federation.edu.au,
Project description: The Latrobe City Council has established                                       wendy.wright@federation.edu.au
a number of vegetated wetlands for treatment of both industrial                Phone:               (03) 5122 8026
and urban stormwaters. The council are interested to see how
effective their design is. This will be tested by undertaking bi-              Project description: In Victoria, as elsewhere, clearing of our
monthly sampling of the wetlands for water quality, nutrients,                 native vegetation and associated loss of habitat and
invertebrates and vegetation. There are also parallel projects                 biodiversity has been extensive. In an effort to remediate this,
related to the construction of the wetland and flow regimes                    revegetation programs aim to return fragmented landscapes to
(engineering) and social value of the wetland sites (social                    a more functional state. Lichens are sensitive to microclimatic
science).                                                                      conditions and have long been known as good indicators of
Key words: wetlands, ecology, climate change,                                  habitat continuity. They also play an important ecological role
Rehabilitation, water chemistry                                                and it is important to recognise their potential contribution to
                                                                               revegetated forests. Lichens have been used to monitor
                                                                               ecosystem function or health (described as including
                                                                               maintenance of productivity, nutrient cycling, and disturbance
                                                                               response) of a forest. Their presence can, therefore, be used
                                                                               as an indication that this has been re-created at a revegetated
                                                                               site. The overall objective is to determine if individual lichen
                                                                               species or lichen assemblages can be used to determine the
                                                                               success of a revegetation project in mimicking the ecosystem
                                                                               functionality usually associated with remnant vegetation.
                                                                               Students will develop: vegetation and lichen identification skills
Healthy Agricultural Soils

Location:              Gippsland Campus
Project Leader:        Dr Jess Reeves
Email:                 j.reeves@federation.edu.au
Phone:                 (03) 5327 9049

Project description: This is a two phase project looking at the
chemistry and biology of agricultural soils in Southern
Gippsland. We are working with 8 properties who are
interested in improving their soil health. They have employed a
range of techniques, including compost, mulch, organic
fertilisers, grazing and crop rotation. The project will look at the
efficacy of each of these methods on soil health across a range
of agricultural landscapes and produce types. The project
forms part of Growing Southern Gippsland, funded by the                        (including microscopy and thin layer chromatography), and
DELWP Climate Change Adaptation grants and led by Bass                         skills in analysing the success of different revegetation
Coast Landcare Network.                                                        techniques. Project aims are to: identify the lichen flora of
                                                                               revegetation projects in different successional stages;
                                                                               compare lichen species in revegetated patches with those in
                                                                               remnant patches in similar ecological vegetation classes
                                                                               (EVCs); to investigate if the revegetation method employed has
                                                                               an impact on lichen richness.
                                                                               Key words: lichen, indicators, ecosystem functionality,
                                                                               revegetation, monitoring, restoration

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                  12
Environmental Science
(continued)

Habitat specificity and competitive traits of                                  Seed ecology and agronomy of a selected
Australian acacias invaded to natural landscapes                               Murnong (Microseris) yam daisy species
in Asia Pacific: a global review
                                                                               Location:             Berwick/Mt Helen Campus
Location:              Berwick/Mt Helen Campus                                 Project Leader:       Dr Kushan Tennakoon,
Project Leader:        Dr Kushan Tennakoon,                                                          Prof S. K. Florentine (Florry)
                       Prof S. K. Florentine (Florry)                                                Dr Nick Schultz
Email:                 k.tennakoon@federation.edu.au                           Email:                k.tennakoon@federation.edu.au
Phone:                 (03) 4313 7954                                          Phone:                (03) 4313 7954

Project description: The genus Acacia (Family: Fabaceae;                       Project description: Murnong (Microseris sp.) has long been
subfamily: Mimosoideae) commonly known as Wattles are                          recognised as one of the most important staple food sources
native to both Australia and Africa. The Acacia lineage native                 for Aboriginal people of the grassy plains of south-eastern
to Australia comprise over 900 species are found in different                  Australia. However, Murnong on the plains became scarce
habitats: from coastal to subalpine regions, from high rainfall to             after the introduction of sheep and rabbits. Murnong persist
arid areas, in tropical, sub-tropical and temperate regions.                   now in isolated undisturbed grassland remnants and dry
Approximately 300 Acacia spp. of Australian origin have been                   sclerophyll forests in Victoria. Recently, Walsh (2016)
introduced around the world as timber and ornamental plants                    conducted a taxonomic revision which increased Microseris
and approximately 23 of them have become highly invasive in                    from two to three species. In Victoria Microseris walteri (largely
many terrestrial ecosystems and causing significant impact on                  found in central and western Victoria), M. scapigera (south-
biodiversity. Ten Acacia spp. (with six species of Australian                  west Victoria), and M. lancelota (eastern part of Victoria) exist.
origin viz. A. longifolia subsp. sophorae, A. mangium, A.                      The Murnong SEED Citizen Science Project (SEED - Studies
mearnsii, A. melanoxylon, A. retinodes. and A. saligna) are                    Exploring Edible Daisies) is a joint Higher Ed and TAFE FedUni
listed in the Global Invasive Species Database with one                        project, with the assistance of more than 200 citizen scientists
species (A. mearnsii) being in the 100 most invasive species                   and gardeners. It aims to explore the growth form and
list.                                                                          distribution of the two local species, analyse their nutritional
                                                                               and medicinal value and build up stocks for education and
                                                                               revegetation projects here in Victoria.
                                                                               This project will investigate the seed ecology and agronomy of
                                                                               one of the Murnong species. Knowledge of optimum growth
                                                                               requirements of Murnong species is critically important to
                                                                               develop cultivation protocols for eventual bushland and
                                                                               grassland revegetation projects using this culturally significant
                                                                               species. A suitable candidate can (i) examine the influence
                                                                               selected environmental factors such as temperature, light, pH,
                                                                               Salinity, soil moisture, and burial depth on the germination and
                                                                               emergence of the seeds of one of Microseris species in
                                                                               Victoria, and (ii) examine the effect of different soil types, light
It is vital to identify a discrete set of characteristics which                and application of synthetic fertilisers on the growth and
facilitate successful invasion by exotic plants such as Acacia                 establishment of the same Microseris species under controlled
species in non-original regions. It has been claimed that                      conditions (plant house study to be conducted in the Ballarat
invasive plants typically possess novel traits or exhibit more                 Campus).
extreme trait values which confer on their competitive
advantage over native flora such characteristics: (i) rapid
growth, (ii) high N–fixing ability, (iii) heteroblasty and (iv) high
flexibility in physiological performance found in Australian
Acacia spp. However, no clear separation of particular trait sets
has been reported for either highly invasive or less invasive
Acacia spp. Furthermore, these facilitations may vary in
different environmental conditions. We found that plant
invasion      studies   have      been       unevenly    distributed
biogeographically, with the majority conducted in either
Temperate or Mediterranean climate regions. The
Mediterranean climate is shared by the Mediterranean Basin,
California, Chile, the Western Cape of South Africa and
Southern Australia. In contrast, related studies in other climate
types such as the seasonal tropics are still scarce. Thus, an
assessment of the contribution of traits to success of Australian
Acacia species’ invasions under these largely unstudied
conditions/climates in the Asia Pacific will help us to better
understand invasive mechanisms and subsequently develop
control approaches.
This project will aim to provide insights into Australian Acacia
invasiveness for the more efficacious selection of management
practices, including control.

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                    13
Mathematical Science

Optimisation methods for machine learning                                      Reducing high dimensional convex sets

Location:              Mt Helen Campus                                         Location:            Mt Helen Campus
Project Leaders:       Dr Minh Dao                                             Project Leaders:     Dr David Yost
Email:                 m.dao@federation.edu.au                                 Email:               d.yost@federation.edu.au
Phone:                 (03) 5327 6793
                                                                               Project description: A convex set P which is symmetric about
Project description: Since conceptualised, mathematical                        the origin, is called reducible, if there is a nonsymmetric convex
optimisation has always been an effective tool in problem-                     set Q for which P is the set of all differences of the elements of
solving and decision-making processes. Many real-life                          Q. Otherwise, P is irreducible. In two dimensions, every square
problems can be treated as optimisation problems, requiring                    or parallelogram is irreducible, but everything else is reducible.
the best solution among a set of possible ones. In the current                 For example, the difference set of a triangle is a regular
era of big data, the explosion in size and complexity of datasets              hexagon.
has greatly influenced the focus of optimisation research.                     In higher dimensions, deciding reducibility is not a such an
However, existing methods and theories for large-scale                         easy problem. Perhaps surprisingly, any d-dimensional
problems have not yet taken full advantages of specific                        symmetric polyhedron with less than 4d vertices is irreducible
structures and hence, faced major difficulties in handling                     (unless it is a hexagon). Nevertheless, there is an algorithm for
increasingly massive and distributed datasets. This work                       finding a nonsymmetric polytope Q which reduces P, or proving
provides a deep understanding of structures of optimisation                    that no such Q exists. This algorithm has barely been studied,
problems and complexity analysis of numerical algorithms in                    in dimension three or higher. For example, it remains unknown
order to explore the frontier of research in big data optimisation             whether a reducing set (when one exists) can be found with
and machine learning.                                                          fewer vertices than the original symmetric set. This project will
                                                                               examine a large collection of examples in three and four
                                                                               dimensions, and attempt to find relationships.

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                  14
Food Science

Compositional evaluation of Murnong                                            Role of lactic acid bacteria in flavour formation of
                                                                               whiskey
Location:              Mt Helen Campus
Project Leaders:       Dr Lara Wakeling, Dr Benjamin Long                      Location:             Mt Helen/Gippsland Campus
Email:                 l.wakeling@federation.edu.au;                           Project Leader:       Dr David Bean, A/Prof Andrew Greenhill
Phone:                 (03) 5327 9250                                          Email:                d.bean@federation.edu.au;
                                                                                                     andrew.greenhill@federation.edu.au
Project description: Murnong, commonly referred to as the
yam daisy, is known as a key food source for Aboriginal people                 Project description: Whiskey has a complex flavour profile,
of south eastern Australia. There are two local species of                     which is derived in part from the microbial communities
murnong: Microseris walteri and Microseris scapigera. Little is                involved in fermentation. Yeast are used in the fermentation
known      about                                                               process and are well recognised for their contribution to flavour
the nutritional                                                                profiles; however, other microbes are also likely to play a role
composition of                                                                 in flavour profile of whiskey and other spirits. The
murnong and                                                                    microorganisms with a potential role in flavour are possibly
how it changes,                                                                endogenous distillery microbes, potentially originating from
yet anecdotal                                                                  grain. This endogenous microbiota potentially contributes to
evidence                                                                       the unique flavour profile of different whiskeys.
suggests that                                                                  Despite the prospective role of endogenous microbes in
the sweetness,                                                                 whiskey flavour profiles, there is a dearth of scientific literature
in    particular,                                                              investigating the contribution of the “secondary” microbes (i.e.,
changes across the year. In this project you will the complete                 microbes other than those added specifically to convert
a comprehensive analysis of nutritional composition of the two                 fermentable sugars to ethanol) to the flavour of whiskey. This
local species of murnong and evaluate how the composition                      project would recover and characterise organisms for a
changes across the seasons. You will become familiar with                      distillery with the aim of understanding their role in formation of
many techniques involved in food analysis.                                     flavour compounds.

Hydration of yeast in brewing: adding value or                                 Fluorescent sensing arrays for hops in beer
unnecessary risk?
                                                                               Location:             Gippsland/Mt Helen Campus
Location:              Mt Helen/Gippsland Campus                               Project Leaders:      Dr David Smith, Dr David Bean,
Project Leader:        Dr David Bean, A/Prof Andrew Greenhill                                        A/Prof Andrew Greenhill
Email:                 d.bean@federation.edu.au;                               Email:                d.smith@federation.edu.au;
                       andrew.greenhill@federation.edu.au                                            d.bean@federation.edu.au
                                                                               Phone:                (03) 5122 6023
Project description: There has been great advancements in
dry yeasts for the brewing industry in the past 10 – 15 years.                 Project description: Sensing arrays use several non-
Until recently there were relatively few brewing yeast strains                 selective probes in combination to create a unique finger-print
available as dry yeast; though now there is a greater range and                response to an analyte or range of analytes. This project aims
an increasing acceptance of dried yeast. However, there are                    to use fluorescent sensing arrays to detect and quantify the
still some reservations in some sectors of brewing fraternity,                 presence of the acid and essential oil components of different
perhaps in part because large breweries have their own yeasts                  hop varieties. The aim would be to create new methods for the
strains thus do not depend on dried yeast. However, amongst                    determination of these compounds within the brewing process.
many in the craft brewing industry dried yeasts have gained                    Key words: fluorescence, sensing array, brewing
acceptance. Dried yeast has many advantages over liquid
yeast, not the least the storage life of dried yeast. Craft brewing
is a key potential market for dried yeast producers.
Beyond acceptability of dried yeast, there remains debate over
the need to rehydrate dried yeast prior to pitching. Some
manufacturers suggest pitching yeast directly, others
recommend rehydrating the yeast first. To add to the confusion,
texts and brewing websites (many targeting home-brewers)
provide opinions, often conflicting. Currently, decisions are
being made on whether to rehydrate yeast before pitching
based on opinions rather than data. Moreover, many of the
opinions are influenced by dried yeast characteristics of >10
years ago, not on the current product.
The value of rehydrating dried yeast is an important research
question. Dried yeast is a highly convenient product; however,
the need to rehydrate does detract from that convenience.
Moreover, there may be quality risks associated with
rehydration, not the least the risk of contamination. This study
seeks to determine the value of re-hydrating various strains of
brewer’s yeast.

School of Science, Psychology and Sport – BSc Honours Research Projects 2021                                                                    15
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