CWP #8: Open Science 2022
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CWP #8:
Open Science
2022
Sebastian Lindner, Axel Dürkop
1. Open Science
Agenda: 2. Research Data Management
3. Student Management
4. PhD Management
5. Open Document Formats / Publishing Re-
search Data
6. Sharing Complex Environments
2
7. How can I learn to use these tools?
2022
Forschen: Digital und Offen
3
2022
What is it?
The Internet has fundamentally changed the
practical and economic realities of distributing
scientific knowledge and cultural heritage. For
the first time ever, the Internet now offers the
chance to constitute a global and interactive
representation of human knowledge, including
cultural heritage and the guarantee of
worldwide access.
Berlin Declaration on Open Access to Knowledge in the Sciences and
Humanities signed by more than 550 research institutions world-wide
including TUHH
4
2022Why should we care? I
Open Access is being required by
funding organizations.
5
2022Why should we care? II
Data must be reproducible.
The changes are already
substantial.
6
2022Why should we care? III
Open access must be immediate.
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2022Why should we care? IV
Why did you join
today’s workshop?
What draws you towards Open Science?
8
2022If you’re looking for more motivation . . .
• The road is clear, but it’s still
early days
⇒ let’s be pioneers
• Distinguish from the crowd
• Plan successful research pro-
posals
• Receive higher citations 9
• Demonstrate societal impact
2022Research Data Management
• How do you keep your data on . . .
• your research (dissertation, papers, . . . )
• your students’ research (theses, HiWi, . . . )
10
• your (third-party-funded)-projects
• ...
2022Common answers
• On your own device, unstructured, un-
documented
• each for themselves, not for others
• difficult to reference
• difficult to reproduce (what were these parameters again?)
• On some cloud storage (NextCloud, . . . )
• collaborative between the partners
• each partner applies their own structure
• Dilemma: openness vs documentation 11
quality
• what happens to your data when you move on to
your next job?
2022Good facts. . .
• TUHH is dedicated to
• Open Science
• Open Access
• Open Education
• Open Source
• Policy of Openness in Research and Teaching
• TUHH Open Research Repository
12
• Let’s check how we can make this a re-
ality in our day-to-day job
2022What’s ahead?
A practical tell-tale
of our attempts at open science
FAIR
• Student management
Findable, Accessible, Interoperable and Reusable
• Project management
• Open publications
• Open document formats in industry projects
• Sharing complicated environments 13
• simulation models
• ...
2022GitLab
A pretty powerful open-source tool . . .
• Data repositories
• stem from software development (Linux kernel)
• general enough to apply to anything
• feature project management
⇒ responsibilities, issues, due dates, labels, milestones,
comments, . . .
• and version control
⇒ go back to any version
14
2022GitLab for student management
• each student gets a thesis repo
• thesis file management
• auto-backup
• shared issues and milestones
• ready to archive upon submission → FAIR
• one institute management board
• We hijack an issue board
→ Let’s have a look
• (no, it’s not directly related to open science, but it
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demonstrates the automatic documentation features of
GitLab)
2022GitLab for research
• PhDs / papers are pretty compli-
cated projects
• GitLab can help organize
→ auto-diary
→ assign tasks
→ shared with Prof / colleagues
• keeps track of all changes 16
• can discuss issues, files
2022Open vs Proprietary Data Formats
• Closed-source formats could vanish with time
• DFG says: keep data for ten years
⇒ What if the software to read your data is not used anymore in
ten years?
• Open-source / human-readable formats
⇒ better chance of survival
• We’re using Markdown documents
• Pandoc to convert Markdown
→ Microsoft Word
→ PDF
→ ...
17
• Workflow
• example at Journal kommunikation@gesellschaft
• explanation at Modern Publishing
2022Publishing research data
• Develop on GitLab (internal)
• Put on GitHub (public)
+ • Archive on Zenodo (CERN-hosted)
→ obtain DOI
= → reference DOI in your paper
“Machen Sie Ihre Software auf GitHub 18
zitierfähig“
Beate Rajski, Fachreferentin, Digitale Dienste und Forschungsdaten an
der TUHH
2022Sharing Complex Environments
• Research data can come in all shapes and sizes
• measurements
• surveys
• code
• ...
• Publishing it requires a case-by-case solution
• just the data, but with thorough documentation?
• the data, and accompanying scripts?
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• an entire simulator?
2022Workshop Advertisements
12. and 19.05.2022: Einführung in GitLab
09. and 16.06.2022: Kollaborativ forschen und entwickeln mit GitLab
Thank you for listening!
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Open Access logo by art designer at PLoS, modified by Wikipedia users Nina, Beao, and JakobVoss - http://www.plos.org/, CC0,
https://commons.wikimedia.org/w/index.php?curid=15736161
2022Thank You very much Hamburg University of Technology (TUHH) Sebastian Lindner, Axel Dürkop ComNets & ITBH Am Schwarzenberg-Campus 1 21073 Hamburg Tel.: +49 40 42878-3330 corresponding.author@tuhh.de www.tuhh.de tuhh.de
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