Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...

 
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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
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1     Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX

2                             observations and Coupled Modeling

3                                  Edoardo Mazza∗ and Shuyi S. Chen

4                Department of Atmospheric Sciences, University of Washington, Seattle
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                                   Submitted to J. Atmos. Sci.
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    ∗ Corresponding   author: emazza2@uw.edu

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
ABSTRACT

 6   The formation of tropical cyclones (TC) in unfavorable large-scale environments remains a chal-

 7   lenge for TC forecasting. Tropical Storm (TS) Cindy (2017) formed at 1800 UTC 20 June in

 8   the Gulf of Mexico despite strong vertical wind shear, low mid-tropospheric relative humidity,

 9   and poorly organized convection. A key to TC genesis is the initial development of a warm

10   core within an emergent cyclonic vortex, a process which occurs on small spatial scales and is

11   often difficult to observe. TS Cindy was observed during the Convective Processes Experiment

12   (CPEX) field campaign in 2017 by the NASA DC-8 aircraft, equipped with a Doppler wind lidar,
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13   precipitation radar, and GPS dropsondes. This study combines CPEX observations and a cloud-

14   resolving, fully-coupled atmosphere-wave-ocean numerical simulation to investigate the formation
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15   of TS Cindy. Prior to TC genesis, a shallow cyclonic circulation was embedded in a deep layer

16   of west-southwesterly flow associated with an upper-level trough. Within the disturbance, a warm
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17   and dry anomaly was observed by dropsondes near the center of the cyclonic circulation, with

     a maximum at about the 2.5 km level. The temperature perturbation reaches 5°C along with a
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19   dew point temperature depression of 8°C in the coupled model simulation. Backward trajectory
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20   analysis shows that subsidence is primarily associated with a thermally indirect circulation along

     the western flank of the storm. Air parcels descend more than 1000 m towards the lower tropo-
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22   sphere while warming up by 9-12°C. The subsidence-induced virtual temperature perturbation in

23   the 1.5-3.5 km layer accounts for 50 % of the sea-level pressure depression. Subsidence warming

24   therefore played a key role in the genesis of TS Cindy.

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
25   1. Introduction

26     The genesis of tropical cyclones is a multiscale process that involves the transformation of a

27   precursor disturbance into a warm core, low-pressure system with a closed surface circulation.

28   Precursor disturbances can be tropical waves in the tropical basins (Frank and Roundy 2006), long-

29   lasting mesoscale convective systems (MCSs) or cloud clusters (Kerns and Chen 2013), monsoon

30   lows, Central-American gyres (Papin et al. 2017) or have an extra-tropical origin (Davis and Bosart

31   2003). TC genesis is facilitated when a set of large-scale conditions are met, such as low vertical

32   wind shear, a moist mid-troposphere, a vorticity-rich low troposphere, a deep and warm ocean
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33   mixed layer (Gray 1968; McBride and Zehr 1981) and a large thermodynamic disequilibrium

34   between the tropopause and the sea surface (McTaggart-Cowan et al. 2015). TC genesis involves
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35   two fundamental processes: the amplification and organization of cyclonic vorticity, and the

36   formation of a warm core vortex. Pre-existent, low-level cyclonic vorticity can be amplified and
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37   axisymmetrized by vortical hot towers (Hendricks et al. 2004; Montgomery et al. 2006). Mid-

     tropospheric vortices can instead result from diabatic heating in the stratiform region of long-lived
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39   MCSs (Chen and Frank 1993) or from evaporative cooling in the precipitating region of MCSs
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40   (Bister and Emanuel 1997). The formation of the warm core is supported by diabatic heating in

     the convective and stratiform cloud region (Chen and Frank 1993; Dolling and Barnes 2012a). An
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42   observational study by Kerns and Chen (2015) showed that subsidence warming associated with

43   MCSs can contribute directly to development of warm core vortex in TC genesis.

44     About 60 % of all TC genesis events in the North Atlantic from 1948 to 2010 involved a varying

45   degree of baroclinicity (McTaggart-Cowan et al. 2013). In the Western Caribbean Basin and

46   Gulf of Mexico, TC genesis often occurs in unfavorable environments, with upper-tropospheric

47   disturbances enhancing the vertical wind shear and promoting mid-tropospheric dry air intrusions

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
48   (Gray 1968). Bracken and Bosart (2000) found that a pronounced upper-tropospheric trough-ridge

49   pattern is often associated with TC genesis events in the Bahamas and Gulf of Mexico. Strong

50   vertical wind shear is considered to be unfavorable for TC genesis as observed in the Atlantic and

51   the west Pacific (McBride and Zehr 1981; Kerns and Chen 2013), while weak-to-moderate westerly

52   shear can instead assist TC genesis (Bracken and Bosart 2000; Nolan and McGauley 2012; Reasor

53   and Montgomery 2001). Wind shear induces significant structural changes in TCs, which can

54   hinder their development or intensification: idealized experiments (Jones 1995; Frank and Ritchie

55   1999, 2001) and observational studies (Rodgers et al. 1994; Black et al. 2002; Chen et al. 2006;

     Corbosiero and Molinari 2002; Reasor et al. 2013) indicate that the structure of sheared TCs is
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57   highly asymmetric, as the deepest convection focuses in the downshear quadrants. Another factor
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58   that greatly affects the formation of TCs is mid-tropospheric humidity (Malkus 1958; Gray 1975;

59   McBride and Zehr 1981). TC genesis is favored by high relative humidity in the mid-levels, whereas
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60   intrusions of dry air can delay or suppress TC development (e.g. Dunion and Velden 2004; Wang

61   2012; Kerns and Chen 2013). Ventilation of dry and cool air into the developing TC disrupts its
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62   thermodynamic structure and suppresses convection by reducing the updrafts buoyancy (Simpson
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63   and Riehl 1958; Shelton and Molinari 2009; Riemer and Montgomery 2011; Tang and Emanuel

     2012; Ge et al. 2013). Importantly, how TCs develop in relatively unfavorable environmental
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65   conditions over the Gulf of Mexico remains an active area of research.

66     Subsidence-driven temperature anomalies associated with oceanic convective systems have been

67   documented since the GATE field campaign (Houze 1977; Zipser 1977). Simpson et al. (1997)

68   argue that subsidence is the only viable process for maintaining a low-level warm anomaly in clear

69   air. Descent is typically observed in the form of unsaturated downdrafts underneath the anvil canopy

70   of long-lived MCSs. Chen and Frank (1993) showed the presence of a wake low in a region of

71   low-tropospheric subsidence on the edge of a simulated MCS. In mature tropical cyclones, instead,

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
72   observed subsidence-induced warm anomalies are often attributed to vortex tilting (Halverson

73   et al. 2006; Heymsfield et al. 2006; Shelton and Molinari 2009). The relationship between wind

74   shear and asymmetric warm anomalies in TCs has been investigated by Tao and Zhang (2019),

75   which describe how the alignment of a mid-tropospheric and upper-tropospheric warm anomalies

76   is often seen as the storm approaches the onset of rapid intensification. A small number of studies

77   focuses on the role of subsidence during TC genesis and almost exclusively investigated the role of

78   subsidence within MCSs. Dolling and Barnes (2012b) and Dolling and Barnes (2012a) describe

79   how subsidence helped the formation of a lower-tropospheric warm core in TS Humberto (2001)

     by inducing a hydrostatic pressure drop and by capping the boundary layer, allowing for a buildup
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81   of high equivalent potential temperature air, which was later ingested in the nascent eyewall.
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82   Stossmeister and Barnes (1992) document the formation of a second circulation center in TS Isabel

83   (1982) underneath a region of mesoscale subsidence. Finally, subsidence warming during TC
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84   genesis was also captured by dropsondes released in typhoons Megi and Fanapi during the Impact

85   of Typhoons on Ocean in Pacific (ITOP) field campaign (Kerns and Chen 2015).
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86     Is the presence of long-lived MCSs the only pathway to low-level subsidence warming during
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87   TC genesis? In this study, we focus on the genesis of TS Cindy (2017) to describe how subsidence-

     induced warm anomalies in the lower troposphere can support TC formation in a very different
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89   dynamic and thermodynamic context. TS Cindy developed from a poorly-organized, broad cy-

90   clonic disturbance embedded in a high-shear, low mid-tropospheric relative humidity environment.

91   Airborne observations collected during the NASA Convective Processes Experiment (CPEX) field

92   campaign reveal a low-level warm anomaly formed within a shallow cyclonic circulation in a

93   cloud-free region, well removed from convective clusters and their associated anvils. Using a com-

94   bination of aircraft observations and a convection-resolving, fully-coupled atmosphere-wave-ocean

95   simulation, we address three main questions: a) what are the spatial and temporal characteristics

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
96   of the subsidence-induced temperature perturbation, b) does the subsidence-induced warming pro-

 97   duce a significant pressure perturbation during TC genesis? and c) what mechanisms drive the

 98   descent? The thermodynamic and kinematic properties of the disturbance are investigated using

 99   dropsonde and airborne wind lidar retrievals, complemented by a high-resolution model simulation

100   to overcome their limited spatial and temporal sampling. The model simulation is then employed

101   to perform backward trajectory analysis and to diagnose the driving mechanisms of subsidence.

102     The paper is organized as follows: section 2 is an overview of the meteorological evolution of TS

103   Cindy, the data and methodology employed in the study are described in section 3. The results are

      presented in section 4, 5, 6, 7 and 8. A discussion of the results and their implications is included
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105   in section 9.
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106   2. Overview of Tropical Storm Cindy
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107     The National Hurricane Center (NHC) describes Cindy as a large, sprawling TS that formed

108   on 20 June. Its genesis was preceded by the interaction of two consecutive tropical waves with a
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109   Central-American Gyre (CAG). The first wave reached the Caribbean Sea on 15 June, while the
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110   second wave moved into the basin on 18 June. The second wave featured deep convection on

      its eastern flank (Fig.1a) along with low-level cyclonic vorticity. The interaction with the CAG
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112   produced a cyclonic disturbance in the central Gulf of Mexico on 19 June 2017 characterized by

113   an elongated circulation, with wind speed exceeding 17 m s−1 (Berg 2018). At this stage, the

114   convective activity was primarily focused along the eastern flank of the disturbance (Fig.1b).

115     On 20 June, multiple low-level vorticity local maxima merged into a coherent center as the deep

116   convection attained a curved structure around it (Fig.1c), prompting the NHC to declare the genesis

117   of TS Cindy at 1800 UTC 20 June 2017. TS Cindy formed in an unfavorable environment: an

118   upper-level cut-off in the northwestern Gulf of Mexico advected mid-tropospheric drier air into

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
119   the Gulf and enhanced the vertical wind shear in the area prior to TC genesis. As a result, TS

120   Cindy was characterized by a broad surface wind field, with an exposed low-level circulation and

121   asymmetrically-distributed convection (Fig.1c).

122     On the next day, deep convection rotated towards the NW quadrant (Fig.1d) as TS Cindy

123   intensified to reach a peak intensity of 50 kt on 21 June 0000 UTC. TS Cindy made landfall at

124   0700 UTC on 22 June just west of Cameron, LA. While inland, TS Cindy weakened to TD status

125   and finally dissipated on 24 June 0600 UTC in the mid-Atlantic states. The impact of TS Cindy

126   was primarily due to excessive rainfall: widespread accumulations in the 7-10 in. range were

      measured in south-eastern Mississippi, southwestern Alabama and part of the Florida panhandle,
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128   with a maximum of 18.69 in. at Ocean Springs, MS.
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129   3. Data and methods
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130     This study uses a combination of aircraft observations from the CPEX field campaign, satellite

131   observations, and a fully coupled atmosphere-wave-ocean high resolution numerical simulation.
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132   For model comparison purposes, the track and intensity of TS Cindy are obtained by linearly inter-
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133   polating the Best-Track dataset (Landsea and Franklin 2013) to hourly interval. High-frequency,

      2-minute storm center fixes from the NHC are used for the CPEX observations analysis.
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135   a. CPEX Field Campaign − Aircraft Observations

136     The CPEX field campaign took place in the North Atlantic-Gulf of Mexico-Caribbean Sea

137   region in May-June 2017. It was designed to study convective processes in the tropics using the

138   NASA DC-8 aircraft observations (Chen and Zipser 2018). Four research flights from 17-21 June

139   were conducted to capture the development of TS Cindy from its precursor tropical wave in the

140   western Caribbean Sea. On 17 June and 19 June, the flights targeted some of the convective

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141   elements embedded in the precursor disturbance. On 20 June, the NASA DC-8 airplane sampled

142   the kinematic and thermodynamic structure of TS Cindy right as the disturbance was classified as

143   TS by the NHC (Fig.2a). Its mature phase was captured by the 21 June mission (Fig.2b).

144     The wind and thermodynamic profiles analyzed in this study were obtained from the Doppler

145   Aerosol WiNd lidar (DAWN) and by Yankee Environmental System (YES) dropsondes (Black et al.

146   2017). DAWN is a coherent-detection, wind-profiling lidar system that emits a pulsed signal with

147   a 2-micron wavelength (Kavaya et al. 2014). The instrument retrieves wind speed and direction at

148   a vertical resolution of approximately 65 m. YES dropsondes measure wind and thermodynamic

      variables as they descend through the atmosphere at a 2 Hz frequency. YES dropsondes have
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150   been previously employed during the Tropical Cyclone Intensity (TCI) field campaign (Doyle et al.
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151   2017). In the 20 June CPEX mission, 254 DAWN wind profiles were obtained and 16 dropsondes

152   were launched (Fig.2a). 28 dropsondes and 528 DAWN wind profiles were recorded in the 21 June
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153   CPEX mission (Fig.2b).
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154   b. UWIN-CM simulation
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155     The Unified Wave INterface-Coupled Model (UWIN-CM, Chen et al. 2013; Chen and Curcic

      2016) is employed to perform a fully-coupled atmosphere-wave-ocean simulation of TS Cindy.
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156

157   The UWIN-CM consists of the Weather Research and Forecasting model (WRF, Skamarock et al.

158   2008), the University of Miami Wave Model (UMWM, Donelan et al. 2012) and the Hybrid

159   Coordinate Ocean Model (HYCOM, Bleck 2002). The WRF model is configured with an outer

160   domain with two nested grids with horizontal grid spacings of 12, 4, and 1.3 km, respectively.

161   There are 44 vertical levels. The outer domain covers an area of 6,468 km (E-W) x 4,320 km (N-S).

162   The inner-most 1.3-km nest (523 km x 523 km) is storm-following (Fig.3). The Kain-Fritsch

163   cumulus scheme (Kain 2004) is used in 12-km outer domain, while in both the 4- and 1.3-km nests

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164   convection is resolved explicitly. For all domains, the WRF single-moment, 6-class microphysics

165   scheme (WMS6, Hong and Lim 2006) and the YSU PBL scheme (Hong et al. 2006) are used.

166   The horizontal grid spacing of UMWM is 4 km and 36 frequency bins are used in the spectral

167   computations. HYCOM is run at a 1/25 °(approximately 4 km) horizontal grid spacing and 41

168   vertical levels. Initial and boundary conditions for WRF are provided by the ERA5 reanalysis

169   (Hersbach and Dee 2016), while the HYCOM model is initialized from HYCOM global analysis

170   fields. The simulation is initialized at 1200 UTC 19 June and terminates at 0000 UTC 23 June.

171   The 1.3-km moving nest is initialized 6 hours into the simulation at 1800 UTC 19 June. Analysis

      nudging is applied every 6 hours to the wind fields in the 12-km WRF domain to improve the
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173   simulated track of TS Cindy.
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174     For the analysis of the storm structure, the UWIN-CM WRF output is linearly interpolated onto

175   constant height levels with a vertical spacing of 50 m. A storm-tracking algorithm is used to
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176   calculate the storm position and intensity using hourly model output. The algorithm locates the

177   850 hPa geopotential height minimum and calculates the storm intensity as the corresponding
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178   minimum sea-level pressure and maximum wind speed. Following the NHC official report, the
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179   time of TC genesis in the simulation is taken to be 1800 UTC 20 June 2017.
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180   c. Hydrostatic Pressure Perturbation

181     The sea-level pressure perturbation (SLP’) due to changes in the virtual temperature (Tv ) is

182   calculated using the hydrostatic equation along with the ideal gas law, in a manner consistent

183   with Stossmeister and Barnes (1992); Dolling and Barnes (2012a); Kerns and Chen (2015). SLP0

184   at each model grid point can be estimated using equation 1, where the Top Of the Atmosphere

185   (TOA) is the upper limit of integration and the overbar denotes domain-averaged quantities. The

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Cript - Subsidence Warming in the Tropical Cyclogenesis of Cindy (2017): CPEX observations and Coupled Modeling - Hurricanes and Coupled ...
186   contribution from a specific atmospheric layer (e.g. 1-2 km) can be calculated by changing the

187   limits of integration in equation 1.

                                                 Z       TO A
                                             0                  −g  p(z)   p(z) 
                                     SLP =                                −        dz                  (1)
                                                     0          Rd Tv (z) Tv (z)

188   d. Trajectory Analysis

189     Backward trajectories are calculated by adapting a code developed for the Cloud

190   Model 1 (CM1, Bryan and Fritsch 2002) to work on WRF output.                            The origi-

      nal code is available at https://github.com/tomgowan/trajectories/blob/master/
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192   trajectoriesCM12ndorder.ipynb. It is based on the work of Miltenberger et al. (2013)
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193   and uses a second-order, semi-implicit discretization in space and time. The backward trajectory

194   calculations are performed on 10-minute model output from a twin numerical simulation of TS
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195   Cindy, restarted at 0600 UTC 20 June 2017 from the parent experiment described in section 3b.

196   Three sets of parcel trajectories are initialized within the subsidence-induced warm anomaly at the
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197   elevations of 2500, 2100 and 1700 m.
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198   4. UWIN-CM Simulation of TS Cindy
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199     The storm track and intensity TS Cindy in the UWIN-CM simulation are evaluated against the

200   Best-Track dataset (Landsea and Franklin 2013). The minimum SLP is used for the comparison as

201   it is a more reliable measure of the storm position and intensity than peak winds, in particular in

202   the early stages of development. As shown in Fig.3, the observed track is sufficiently well captured

203   by the model simulation up to the NHC genesis time (1800 UTC 20 June). Later on, the simulated

204   track oscillates around the observed one, showing an anticipated and accentuated recurving to

205   the west. The average track error is 104.7 km. TS Cindy is slower in the simulation than in the

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206   observation: it makes landfall approximately 80 km east and 7 hours later than the observed storm

207   (Figs.3, 4a). The UWIN-CM simulated minimum SLP closely tracks the observation until about

208   0600 UTC 22 June when the observed Cindy made landfall, whereas the simulated storm remained

209   over the ocean because of its slower motion (Fig.4a). As a result, the simulated minimum SLP at

210   landfall is 6 hPa lower than observed. Overall, the root mean square error (RMSE) of the minimum

211   SLP from 1200 UTC 19 June to 1200 UTC 22 June is 2.9 hPa.

212     One of the most prominent large-scale environmental conditions during the development of TS

213   Cindy is strong wind shear. To assess the UWIN-CM simulation of the large-scale environment,

      we compute the deep-layer (200-850 hPa) wind shear, averaged in a 200-800 km annulus around
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215   the storm and compare it to the one calculated from the ERA5 reanalysis. Prior to TC genesis
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216   (vertical dashed line), the UWIN-CM simulation correctly reproduces the observed high-wind

217   shear environment, with values well above 20 m s−1 (Fig.4b). After 00 UTC 21 June, the ERA5
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218   wind shear declines rather steadily, reaching a minimum of 11 m s−1 at 12 UTC 22 June. The

219   UWIN-CM wind shear compares well with the ERA5 one, with an overall RMSE of just 1.3 m
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220   s−1 , however there are two differences: the observed reduction in wind shear is anticipated by
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221   approximately 6 hours and the wind shear is generally weaker after TC genesis between 0000 UTC

      21 June and 0000 UTC 22 June.
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223     The excessive shear reduction coincides with the storm recurving to the west and slowing down.

224   We speculate this could be associated with a more efficient rearrangement of the upper-level flow

225   in the simulation possibly due to diabatic effects. Given the similarity between the observed and

226   simulated track and intensity during the CPEX flights (Fig.3, Fig.4a) and the fact that most of the

227   analysis is performed in storm-relative coordinates, we do not expect these differences to influence

228   the results presented in this study.

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229   5. Subsidence warming

230     Subsidence in an atmospheric layer is revealed by an enhanced dew point temperature depression

231   and increased static stability, often large enough to produce a temperature inversion. Its footprint

232   on the skew T-log(p) diagram is the so-called thermodynamic “onion profile” (Zipser 1977; Houze

233   1977). In this section we examine the evidence of organized subsidence during the genesis of TS

234   Cindy in the CPEX observations and UWIN-CM simulation.

235   a. Observations from the CPEX dropsondes

        The 20 June CPEX mission reveals important thermodynamic features involved in the genesis
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237   of TS Cindy. Three dropsondes were released shortly after the TS classification by the NHC at
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238   1908, 1948 and 2029 UTC 20 June (square markers in Fig.5) in an area largely cloud-free, where

239   the lower-tropospheric temperature was higher than in the surrounding environment. All these
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240   dropsondes are located within 100 km from the storm center (24, 69 and 54 km away respectively)

241   and indicate the presence of low-level subsidence warming within the developing disturbance. The
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242   thermodynamic diagram in Fig.6a shows that the subsidence is maximized around the 800-825 hPa
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243   level, where the dew point temperature depression approaches 10 °C and a cyclonic circulation

      exists (wind barbs in Fig.5). Below that level, an approximately isothermal layer extends down
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244

245   to 900 hPa. A second inversion is also observed at 600 hPa. In the mid-to-upper troposphere,

246   the dry-air intrusion associated with the trough is revealed by dew point temperature depressions

247   exceeding 20 °C. On 20 June, 13 dropsondes were released in the near and far environment, more

248   than 100 km away from the storm in the drier environment along the western flank of the storm or

249   in proximity of precipitating clouds in the eastern flank. Their average temperature and dew-point

250   temperature profiles (Fig.6b) are in stark contrast with those near the storm center: they do not

251   show signs of organized low-level subsidence such as deep layers of temperature inversion and

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252   enhanced dew-point temperature depression. The temperature perturbation within the developing

253   TS Cindy is estimated by subtracting the mean temperature profile of the environment (Fig.6b)

254   from that of the inner disturbance ( Fig.6a). The result is shown in Fig.6c: a positive anomaly of

255   3.84 °C is collocated with the subsidence at 825 hPa, while a second anomaly (3.97 °C) is present

256   just below 600 hPa. The dropsondes data is scarce above 450 hPa but the temperature perturbation

257   profile suggests that the system does not have a well-defined warm core above 500 hPa. The

258   observed thermodynamic structure of TS Cindy indicates that near its genesis time (1900 UTC

259   20 June) a subsidence-induced positive temperature perturbation, maximized at 800-825 hPa, is

      located within a developing cyclonic circulation.
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260

261     The thermodynamic structure of TS Cindy changed remarkably after its genesis. The dropsondes
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262   launched during the 21 June CPEX mission (Fig.7) reveal that, in its mature stage, TS Cindy is

263   characterized by a warm anomaly close to its center that extends from 890 hPa to the upper
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264   troposphere, with a maximum of 2.4 °C located at approximately 650 hPa. Some shallow inversion

265   layers can be observed in the individual dropsondes, as it can be expected next to the convection
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266   of a developing eyewall. The average thermodynamic profiles, however, do not exhibit a clear
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267   subsidence signature, suggesting that the sinking motion lacks the strength and the organization

      observed on 20 June.
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268

269   b. UWIN-CM simulation - Temperature Perturbation

270     To assess the presence of low-level warming in the simulation of TS Cindy, we calculate the

271   temperature perturbation at each vertical level by subtracting the corresponding domain-average

272   temperature and search for its maximum value within 100 km from the storm center. The time-

273   height diagram in Fig.8a shows how the maximum temperature perturbation evolves from 0000

274   UTC 20 June to 0000 UTC to 22 June. Prior to 1200 UTC 20 June, the disturbance is characterized

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275   by a moderately positive temperature perturbation of 2-4 °C between 2000-8000 m. These warm

276   features are generally short lived and lack a coherent vertical structure. Starting at 1200 UTC 20

277   June, the maximum temperature perturbation sharply increases in the 4000 - 4500 layer and extends

278   downward to approximately 2000 m. A second pulse of lower-tropospheric warming starts before

279   0000 UTC 21 June. These warm anomalies have common characteristics: they are maximized

280   just above 2000 m, have magnitudes exceeding 5.5 °C and originate above 4000 m. In the lower

281   troposphere (around 2000 m), the maximum temperature perturbation grows by more than 3.5 °C

282   in 12 hours. The model simulation thus indicates that during the genesis of TS Cindy subsidence

      produced a coherent, long-lasting warm anomaly within the developing disturbance. Later on 21
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284   June, the model portraits a structure characterized by a more elevated temperature perturbation,
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285   largely consistent with the dropsondes collected during the 21 June CPEX mission.

286     The importance of subsidence in the genesis of TS Cindy is further suggested by the time series
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287   of minimum sea-level pressure (Fig.8b): the growth of the lower tropospheric warm anomaly

288   is accompanied and followed by a 7 hPa pressure fall from 1001 hPa to 994 hPa. Once the
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289   warm anomaly dissipates, the minimum sea-level pressure stabilizes around 994 hPa and remains
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290   stationary for several hours afterwards.
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291   6. Kinematic structure

292     As discussed in section 5, both the observations and the model simulation indicate that a

293   subsidence-induced warm anomaly in the lower troposphere occurred prior and during the genesis

294   of TS Cindy between 1200 UTC 20 June and 1000 UTC 21 June. To understand the context in

295   which the subsidence occurs, we analyze the circulation associated with the system along three

296   vertical cross sections at different phases:

297    1) Pre-Subsidence (0800 UTC 20 June)

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298    2) During Subsidence (1900 UTC 20 June)

299    3) Post-Subsidence (2000 UTC 21 June)

300     To do so, we complement the CPEX DAWN wind profiles and dropsondes with the UWIN-CM

301   simulation. CPEX observations are used to validate the simulated structure of TS Cindy. The

302   model simulation provides a complete picture where CPEX observations are scarce: above the

303   flight level, in between dropsondes and in regions of strong lidar attenuation. Due to the absence

304   of airborne measurements, only model fields are presented for phase 1. For phases 2 and 3, the

      CPEX flights legs (1855 - 1922 UTC 20 June and 1950-2022 UTC 21 June) are reproduced in the
                      M

305

306   model output.
                               an

307     The cyclonic circulation associated with the precursor disturbance is clearly evident in the model

308   cross section (Fig.9a, b). In phase 1, the circulation was confined in the lowest 3 km of the
                                          us

309   troposphere and featured a 120 km-wide area of low winds at its center. A southwesterly jet located

310   between 9 and 12 km approached the disturbance from the west, imposing a large wind shear
                                            cr

311   gradient over the disturbance (Fig.9a).
                                               ip

312     Phase 2 was characterized by persistent subsidence within the disturbance. The 20 June CPEX

      flight leg intersected the storm center at 1900 UTC, shortly after the NHC classified the system
                                                                      t

313

314   as TS Cindy. The model cross section (Fig.9c, d) and CPEX observations (Fig.10a, c) show a

315   similar slanted region of low winds at the center of the circulation along with a mid-tropospheric jet

316   located at 7 km. Compared to phase 1, the low-level cyclone has strengthened. Both observations

317   and modeling suggest that the wind speed exceeds 25 m s−1 on the western flank of the circulation

318   (Fig.10d). In this stage, the upper-level jet is directly above the disturbance (Fig.10c). A notable

319   difference can be seen approximately 7 km above the disturbance: while both CPEX observations

320   and model simulation indicate the presence of a mid-tropospheric jet, its position is not entirely

                                                       15
321   consistent. Airborne wind measurements show the maximum located directly above the western

322   flank of the circulation whereas in the UWIN-CM it is located above the center of the disturbance.

323     On 21 June the CPEX flight leg passed to the south of the storm center after the bulk of the

324   subsidence had occurred. Since the DAWN lidar retrievals suffered from severe attenuation in

325   the middle troposphere, the analysis of phase 3 relies more on the model simulation. Following

326   the period of sustained low-level subsidence, the model indicates that TS Cindy is now more

327   axisymmetric (Fig.9e) with a deeper cyclonic circulation whose radius of maximum wind has

328   reduced to approximately 60 km. The model cross section indicates that an eyewall-like wind

      structure is also present. There are however discrepancies between the observed and the model
                      M
329

330   storm structure, in particular the dropsondes indicate lower wind speeds between 4-6 km compared
                              an

331   to the model cross-section (Fig.10d).
                                          us

332   7. Key Processese contributing to subsidence

333     To better understand the physical processes that contributed to subsidence warming in TS Cindy,
                                            cr

334   we analyze the spatial and temporal evolution of the air parcels that undergo substantial warming
                                               ip

335   during the genesis of TS Cindy. We do so by performing a backward trajectory analysis as discussed

      in section 3d. Three sets of trajectories are initialized within the subsidence-induced warm anomaly
                                                                     t

336

337   in the lower troposphere at 1800 UTC 20 June at the elevations of 2500, 2100 and 1700 m, from

338   parcels whose temperature exceeds 18, 20, 22 °C respectively (Fig.11). The three initial levels are

339   selected to represent the behavior of parcels near the top, the center and the bottom of the warm

340   anomaly.

341     Backward trajectories reveal that intense subsidence begins for all three sets of parcels between

342   1100 UTC and 1300 UTC 20 June at an elevation between 3-3.5 km. As shown in Fig.12, prior

343   to starting their descent, the parcels originated primarily from two distinct airstreams: one rising

                                                      16
344   from the lowest levels of the troposphere, and one emanating from the mid-levels. Once the parcels

345   reach the northwest quadrant of the storm, they begin subsiding towards the lower troposphere; in

346   doing so, they become increasingly warmer than their surrounding environment, reaching terminal

347   values above 6 °C (Fig.12b). The bulk of the subsidence is confined along the western flank of

348   the storm, during a 5-hour period between 1300 UTC and 1800 UTC. We can estimate some key

349   characteristics of the subsidence experienced by the air parcels. The median descent for parcels

350   initialized at 1700, 2100, and 2500 m is estimated to be 1090 m, 1130 m and 1380 m respectively,

351   with an accompanying temperature increase of 9.9 °C, 10.3 °C and 12 °C. The resulting lapse rates

      along the trajectories vary between 8.7 °C km−1 and 9.1 °C km−1 , with sinking rates between -6
                      M
352

353   cm s−1 and -7.6 cm s−1 .
                              an

354     The known mechanism supporting subsidence within MCSs or squall lines relies on the evapo-

355   ration of hydrometeors in the stratiform precipitation region (e.g. Houze 1977; Zipser 1977; Chen
                                          us

356   and Frank 1993). The trajectories show that the subsidence is focused along the western flank

357   of the circulation, downstream of the precipitating region (Figs.12, and 13). Parcels initiate their
                                            cr

358   descent underneath the anvil clouds associated with the convection on the northern flank of the
                                               ip

359   storm (Fig.12). In that region, the evaporation of hydrometeors can help initiate the subsidence.

      Although this process may have contributed to the initial descending motion of the air parcels
                                                                     t
360

361   in the stratiform region, the continued descending motion in the nearly convection-free region

362   may be forced by other processes. The prolonged descent of positively buoyant parcels suggests

363   the presence of a thermally indirect circulation. The presence of this ageostrophic circulation is

364   diagnosed via the Pettersen kinematic frontogenesis as defined in Bluestein (1993). As shown in

365   Fig.11a, a large temperature gradient is present in the lower troposphere in the northwest quad-

366   rant of the storm. Colder air wrapping around the developing cyclonic circulation gives rise to a

367   localized band of frontogenesis in the lower troposphere (Fig.14a). The position of this banded

                                                      17
368   region is consistent with the convection observed in the GOES infrared imagery just few hours

369   later (Fig.5). During subsidence, the parcels are located downstream of such band, in a region

370   characterized by weak frontolysis (Fig.14a). The cross section through the frontolytical region

371   shows that it is associated with an area of subsidence (i.e. negative vertical velocity) in which the

372   parcels are embedded (Fig.14b). Such a mechanism relies on the divergence and deformation of

373   the flow, acting on the existing horizontal temperature gradient, which force subsidence to restore

374   thermal wind balance. It is worth noting that a similar mechanism has been proposed to explain the

375   descent of mid-tropospheric air in the sting jets of deep, marine extra-tropical cyclones (Schultz

      and Sienkiewicz 2013; Martínez-Alvarado et al. 2014; Coronel et al. 2016).
                      M
376
                               an

377   8. Decreasing sea-level pressure from subsidence warming

378     Descent produces low level warming and drying, resulting in increased static stability and
                                          us

379   enhanced dew point temperature depression. When the subsidence is sufficiently organized, a

380   surface meso-low can emerge (Zipser 1977; Chen and Frank 1993). As discussed in section 3c,
                                            cr

381   a change of virtual temperature in the atmospheric column will result in a pressure perturbation.
                                               ip

382   The presence of low-level cyclonic vorticity can determine whether the pressure perturbation is

      retained or dissipated by gravity waves. In this section, we investigate the pressure perturbation
                                                                     t

383

384   induced by the subsidence in the UWIN-CM simulation.

385     The lower tropospheric warming and drying within TS Cindy is shown in Fig.15. Early in the

386   genesis stage (0900 UTC), the disturbance does not display a well-organized warm anomaly. As

387   the subsidence develops within the disturbance, however, the temperature rapidly increases in the

388   inner vortex, reaching values above 18 °C at 1800 UTC 20 June. The warm anomaly is located

389   very close to the SLP minimum and is then advected along its southern and eastern flank over

390   time. This temperature perturbation is retained for several hours following TC genesis up to 0000

                                                       18
391   UTC 21 June. As the dropsondes in Fig.10a suggests, subsidence-induced warming also results

392   in a consistent drying of the air mass, with low relative humidity values and an enhanced dew

393   point temperature depression. The simulated temperature perturbation is indeed associated with

394   a significant dew point temperature depression (Fig.15, middle column). At 0900 UTC 20 June,

395   the dew point temperature depression is smaller than 2 °C over most of the domain and does not

396   display a coherent spatial organization. In response to the persistent subsidence, the dew point

397   temperature depression increases near the center of the disturbance and exceeds 8 °C at 1800 UTC.

398     A primary objective of this study is to quantify the direct contribution of the subsidence warming

      to the TC genesis in Cindy. To estimate how much of the total pressure perturbation is accounted
                      M
399

400   for by the low-level warm anomaly, we compute the hydrostatic pressure perturbation by integrating
                               an

401   Equation 1 for two atmospheric layers: i) the SLP pressure perturbation is computed by integrating

402   Eq.1 from the surface to the top of the atmosphere, ii) the pressure perturbation due to the low-level
                                          us

403   warming is estimated by integrating Eq.1 from 1500 m to 3500 m. As shown in Fig.15 (right

404   column), the genesis of TS Cindy is associated with a deepening of the SLP perturbation: as the
                                            cr

405   storm acquires a more axisymmetric look, the total SLP perturbation grows from -3 hPa at 0900
                                               ip

406   UTC 20 June to -6 hPa at 1800 UTC 20 June and -7 hPa at 0000 UTC 21 June. This 4 hPa drop

      from is consistent with the deepening of the SLP minimum displayed in Fig.10b. The pressure
                                                                      t
407

408   perturbation due to the subsidence-induced warm anomaly during TC genesis is shown by the black

409   contours in figure 15. At 0900 UTC 20 June, its contribution is very limited. As the warming

410   occurs, the pressure perturbation in the 1500 - 3500 layer grows up to 3.2 hPa. At 1800 UTC 20

411   June it accounts for more than 50 % of the total perturbation. As most of the warming occurs prior

412   to 1800 UTC 20 June, the contribution of the 1500-3500 m layer does not grow significantly further

413   and remains approximately 3 hPa. Throughout the genesis, the 1500-3500 m pressure perturbation

                                                       19
414   is closely colocated with the position of the SLP minimum and contributes significantly to the

415   deepening and axisymmetrization of the low-pressure system.

416   9. Summary and Conclusion

417     The presence of subsidence-induced low-level warm anomalies has often been linked to a weaken-

418   ing of tropical disturbances due to suppressed convection and mixing of lower equivalent potential

419   temperature air into the eyewall (Shelton and Molinari 2009). It is usually argued that subsidence

420   is due to the interaction between its circulation and the environmental flow (Heymsfield et al.

      2006; Halverson et al. 2006) and results from the differential advection of cyclonic vorticity by the
                      M

421

422   environmental flow. Conversely, this study builds on Stossmeister and Barnes (1992), Dolling and
                               an

423   Barnes (2012b), Dolling and Barnes (2012a) and Kerns and Chen (2015) to argue that subsidence-

424   induced low-level warming can be a key process supporting tropical cyclogenesis. In this study
                                          us

425   we investigate the genesis of TS Cindy from a broad, cyclonic circulation that moved from the

426   Caribbean Sea into the southern Gulf of Mexico (Fig.1), in an environment characterized by high
                                            cr

427   vertical wind shear and low mid-tropospheric moisture.
                                               ip

428     Throughout the genesis process, the structure of the disturbance changed from an initially shallow,

      broad, asymmetric vortex (Fig.16a) to a vertically aligned, axisymmetric cyclone with a tighter
                                                                     t

429

430   eyewall-like feature around its warm core (Fig.16c). Both the CPEX observations and UWIN-CM

431   modeling indicate that the subsidence-induced low-level warming occurred and persisted within

432   the shallow cyclonic disturbance as it organized into a TS. The temperature perturbation estimated

433   to be between 3.8 °C and 6 °C respectively and maximized in the atmospheric layer between 1500-

434   3500 m. The vertical location of the subsidence-induced warm anomaly in TS Cindy is consistent

435   with what previous studies have found in other developing TCs (Halverson et al. 2006; Heymsfield

436   et al. 2006; Dolling and Barnes 2012a). Its magnitude is also comparable to that observed by

                                                       20
437   Stossmeister and Barnes (1992) in TS Isabel (1982), Heymsfield et al. (2006) in TS Chantal,

438   by Dolling and Barnes (2012a) in hurricane Humberto and by Shelton and Molinari (2009) in

439   hurricane Claudette.

440     Backward trajectories calculated from the UWIN-CM simulation indicate that subsidence is

441   focused in the western flank of the disturbance (Fig.16b). Air parcels located in the northern sector

442   of the storm at an elevation between 3-3.5 km start to descend as they exit a precipitating region and

443   move into a drier environment. The subsidence rates are calculated to be between -6 cm s−1 and

444   -7.6 cm s−1 . By integrating the hydrostatic equation we estimate that the lower tropospheric warm

      anomaly accounts for approximately 3 hPa or 50% of the overall SLP depression when the storm
                      M
445

446   was classified as TS by the NHC. Such a pressure perturbation is also consistent with previous
                               an

447   studies. Stossmeister and Barnes (1992) estimated from TS Isabel that a 3-4 km deep layer, having

448   a temperature perturbation of 2 to 3 °C, would result in a pressure perturbation of 2 hPa. Similarly,
                                          us

449   Dolling and Barnes (2012a) calculated that a 7 °C temperature perturbation would result in a 5 hPa

450   pressure perturbation.
                                            cr

451     We describe how subsidence can produce a significant pressure perturbation in a disturbance
                                               ip

452   vastly different from a typical long-lived MCS, one where a pre-existing, shallow and broad

      cyclonic circulation is present but lacks the spatial organization required for TC classification. Due
                                                                      t
453

454   to the shallow nature of the cyclonic disturbance during TC genesis, the deep-layer shear did not

455   produce an appreciable vortex tilt in TS Cindy, as confirmed by both the observed and modeled

456   storm structure, hence the subsidence cannot be interpreted as a response to vortex tilting. We

457   suggest instead that the subsidence results from two processes. The parcels initiate their descent

458   underneath the anvil clouds associated with the convection on the northern flank of the storm,

459   there the evaporation of hydrometeors can initiate the subsidence, as described by Houze (1977),

460   Zipser (1977) and Chen and Frank (1993). As the parcels move away from the precipitation, the

                                                       21
461   subsidence is supported by a thermally indirect circulation linked to an area of weak frontolysis

462   along the western flank of the storm. A similar process has been proposed as the driving mechanism

463   behind sting jets in deep, marine extratropical cyclones (Schultz and Sienkiewicz 2013; Martínez-

464   Alvarado et al. 2014; Coronel et al. 2016). We acknowledge that our analysis does not rule out

465   possible concurring processes that might drive the subsidence.

466     TC genesis events, especially in the early part of the hurricane season or in the subtropics often

467   feature environments characterized by large wind shear, dry mid-tropospheric air and horizontal

468   temperature gradients in the lower troposphere. It is therefore possible that tropical or subtropical

      disturbances embedded in these environments could undergo a similar physical process. This
                      M
469

470   study thus allows us to better understand the occurrence of subsidence during the genesis of TCs
                               an

471   in unfavorable environments by providing a comprehensive analysis of the subsidence-induced

472   temperature, humidity and pressure anomalies that could guide more targeted aircraft observations
                                          us

473   during future events. Additional studies are needed to understand how frequently this process is

474   observed and its storm-to-storm variability.
                                            cr
                                               ip

475   Acknowledgments.     We thank the CPEX science team for their support during the field campaign,

      especially Dr. G. D. Emmitt and Mr. S. Greco for providing the DAWN wind data. The authors
                                                                     t
476

477   are thankful to Dr. Ed Zipser and two anonymous reviewers’ whose constructive comments and

478   suggestions helped improve the manuscript. This research was supported by two NASA research

479   grants, CPEX (80NSSC18K0185) and CYGNSS (80NSSC18K0713).

480   Data availability statement. All the CPEX aircraft observations used in this study are publicly

481   available on the CPEX data repository (https://tcis.jpl.nasa.gov/data/cpex/). The

482   ERA-5 reanalysis data can be obtained from the CDS repository (DOI:10.24381/cds.bd0915c6).

                                                       22
483   Access to the UWIN-CM simulation output along with the analysis codes on the Prof. Chen’s

484   group server can be easily obtained by contacting the corresponding author (emazza2@uw.edu).

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