Beat AML -sponsored by Leukemia & Lymphoma Society A new clinical trial for older patients ( 60) with previously untreated AML - prIME Oncology

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Beat AML -sponsored by Leukemia & Lymphoma Society A new clinical trial for older patients ( 60) with previously untreated AML - prIME Oncology
Beat AML
--sponsored by Leukemia & Lymphoma Society

A new clinical trial for older patients (>60) with
previously untreated AML

William Blum, MD

                                                     1
Beat AML -sponsored by Leukemia & Lymphoma Society A new clinical trial for older patients ( 60) with previously untreated AML - prIME Oncology
Case discussion
     • 64 yo female with thrombocytopenia, circulating
       blasts, obesity, diabetes, and longstanding
       dysfunctional (mild) uterine bleeding (fibroids)

       •   WBC 10K, 12% blasts in blood
       •   Hgb 3.8g/dL, PLT 35K
       •   ECOG PS 2, morbid obesity
       •   DM II, remote history of “CHF” believed due to HTN
       •   BMBx, 30% blasts

                                                      Winship Cancer Institute | Emory University   2
Beat AML -sponsored by Leukemia & Lymphoma Society A new clinical trial for older patients ( 60) with previously untreated AML - prIME Oncology
?
    “This patient needs standard induction chemotherapy, to achieve CR
         quickly and receive curative alloHCT as soon as possible.”

1. Why do we need a novel approach to AML for older patients?
2. What is Beat AML? Master trial: structure and logistics
3. Introduction to a couple of the ongoing Beat AML therapeutic trials
   and brief trial updates (wait til ASH 2018)

                                                     Winship Cancer Institute | Emory University   3
Beat AML -sponsored by Leukemia & Lymphoma Society A new clinical trial for older patients ( 60) with previously untreated AML - prIME Oncology
Outcomes in AML patients over
                   60 years of age

                                   Age     CR rate   5 yr OS

                                   60-69   51%       8%

                                   70-79   48%       8%

                                   >80     24%       0

Farag, et al, Blood 2006 (CALGB)                          Winship Cancer Institute | Emory University   4
Beat AML -sponsored by Leukemia & Lymphoma Society A new clinical trial for older patients ( 60) with previously untreated AML - prIME Oncology
Risk    CR       2yr DFS
                                                            G       82%      62%
                                                            I       60-65    32
                                                            U       56       39
                                                            VU      34       0

                                                                                   Only 10% of
                                                                                   patients received
                                                                                   alloHCT in CR1—

                                                                                      So we have to
                                                                                      figure out how to
                                                                                      get more patients to
                                                International, randomized phase III study
                                                Untreated AML>60, Median age 67yrsalloHCT
                                                High dose daunorubicin vs. standard dose
Lowenberg B, et al. N Engl J Med. 2009;361(13):1235-1248.
                                                                                           Winship Cancer Institute | Emory University   5
Studies based on intensive
induction may not
accurately reflect realities
for all older AML patients

                                          National Cancer Institute.
                                          Surveillance, Epidemiology,
                                          and End Results.
                                          SEER Cancer Statistics Review
                                          1988-2004

The point being we have a                 Klepin HD, et al. Oncologist.
long way to go for “AML in                2009;14(3):222.232.
the older patient”

Although alloHCT is a
critical component of
increasing cures, that
doesn’t mean everyone
should receive 7+3 so they
can get transplanted…

                               Winship Cancer Institute | Emory University   6
Outcomes for older (>60 yrs) AML patients who
 received 7 + 3 chemotherapy in CALGB trials
 (excludes patients with death < 30 days, excludes CBF)                     Best of the best….

Mutation Group                 CR Rate         3-year DFS        3-year OS
NPM1 mutated/FLT3 WT           82%             28%               35%
CEPBPA Double Mutant           50%             33%               17%
IDH1 mutated                   60%             15%               19%
IDH2 mutated                   58%             15%               26%
p53 mutated                    33%             0%                0%
FLT3-ITD positive              63%             8%                14%
RAS or PTPN11 mutated          63%             9%                19%
TET2 or WT1 mutated            53%             10%               11%
EZH2                           44%             14%               19%
No mutation                    63%             18%               16%
All patients                   57%             13%               15%

                                                            Winship Cancer Institute | Emory University   7
Outcomes for older (>60 yrs) AML patients who
 received 7 + 3 chemotherapy in CALGB trials
 (excludes patients with death < 30 days, excludes CBF)                     Best of the best….

Mutation Group                 CR Rate         3-year DFS        3-year OS
NPM1 mutated/FLT3 WT           82%             28%               35%
CEPBPA Double Mutant           50%             33%               17%
IDH1 mutated                   60%             15%               19%
IDH2 mutated                   58%             15%               26%
p53 mutated                    33%             0%                0%
FLT3-ITD positive              63%             8%                14%
RAS or PTPN11 mutated          63%             9%                19%
TET2 or WT1 mutated            53%             10%               11%
EZH2                           44%             14%               19%
No mutation                    63%             18%               16%
All patients                   57%             13%               15%

                                                            Winship Cancer Institute | Emory University   8
Outcomes for older (>60 yrs) AML patients who
 received 7 + 3 chemotherapy in CALGB trials
 (excludes patients with death < 30 days, excludes CBF)                     Best of the best….

Mutation Group                 CR Rate         3-year DFS        3-year OS
NPM1 mutated/FLT3 WT           82%             28%               35%
CEPBPA Double Mutant           50%             33%               17%
IDH1 mutated                   60%             15%               19%
IDH2 mutated                   58%             15%               26%
p53 mutated                    33%     16%     0%                0%
FLT3-ITD positive              63%             8%                14%
RAS or PTPN11 mutated          63%             9%                19%
TET2 or WT1 mutated            53%             10%               11%
EZH2                           44%             14%               19%
No mutation                    63%             18%               16%
All patients                   57%             13%               15%

                                                            Winship Cancer Institute | Emory University   9
INNOVATIVE TRIAL
    DESIGN
    FOR AML
    THE BEAT AML TRIAL
                                                “ONE DOES NOT FIT ALL”

Pis: Byrd, Levine, Druker
Co-I: Blum, Mims, Walker, Borate, Stein, Pollyea, Collins, Stock, Odenike, Foran, others
BIOLOGY OF AML – COMPLEX AND
 HETEROGENOUS
     Growing number of gene mutations
         - Relatively small number per case
         - Significant differences between cases
            including in co-mutational patterns
         - However some groups of mutations
            converge on common mechanisms of
            transformation (TET/IDH/WT1)

     Relapse represents more complex mixture of
     disease
          - Presence of pre-existence and/or evolution
             of resistant subsets within single AML
             cases

     Targeting early, untreated disease –
     potential therapeutic opportunity

11                                                       BLOOD, 21 JANUARY 2010
                                                         N Engl J Med 2013; 368:2059-2074

                                                                                            Winship Cancer Institute | Emory University   11
EXAMPLE CLINICAL TRIAL TIMELINE:
PATIENT IDENTIFICATION

                                              Assign
                                            Treatment   Targeted        Initiation
                                            by Marker
                                                         Agent           of Trial

       Patient       Bone
                             Genomic Screening
     Registration   Marrow
                             < 1 Week (7 days)
      Consent       Sample
                                                        Alternative therapy

                                                           Novel
                                                           Agent

                                                                        Winship Cancer Institute | Emory University   12
WHERE ARE WE NOW: ACTIVE CLINICAL
 SITES
      Clinical Sites
        •   Memorial Sloan Kettering
        •   Oregon Health Sciences
        •   Ohio State University
        •   UT Southwestern
        •   Colorado
        •   Mayo
        •   U Chicago
        • Emory!!!

13
                                       Winship Cancer Institute | Emory University   13
Initial Prioritization

1. CBF alterations
2. NPM1 mutation (FLT3 wt)
3. KMT2A (formerly MLL) rearrangement
4. IDH2 mutation
5. IDH1 mutation
6. TP53 mutation
7. FLT3 mutation
8. TET2/WT1 mutation
9. None of the above (or no available trial)
                                               Winship Cancer Institute | Emory University   14
M1: Master screening study

S1: Core binding factor---Samalizumab (CD200) plus IC
S2: “HMA sensitive mutations”--AZA plus BI 836858 (glycoengineered CD33 mAb)
    “Marker negative”—same therapy, different cohort
S3: AG-221 plus AZA
S4: KMT2A rearranged—Entospletinib (ENTO, Syk inhibitor) plus AZA
S5: TP53 mutated---ENTO plus decitabine
S6: NPM1 mutated (FLT3wt): ENTO plus IC or AZA

S9: TP53 mutated, Pevonedistat plus AZA
S16: IDH1 mutated, AG-120 plus AZA

In negotiations for FLT3 inhibitors, Cdk inhibitors, BRD4, many others
                                                               Winship Cancer Institute | Emory University   15
M1: Master screening study

S1: Core binding factor---Samalizumab (CD200) plus IC
S2: “HMA sensitive”--AZA plus BI 836858 (glycoengineered CD33 mAb)
    marker negative—same therapy, different cohort
S3: AG-221 plus AZA
S4: KMT2A rearranged—Entospletinib (ENTO, Syk inhibitor) plus AZA
S5: TP53 mutated---ENTO plus decitabine
S6: NPM1 mutated (FLT3wt): ENTO plus IC or AZA

S9: TP53 mutated, Pevonedistat plus AZA
S16: IDH1 mutated, AG-120 plus AZA

In negotiations for FLT3 inhibitors, Cdk inhibitors, BRD4, many others
                                                               Winship Cancer Institute | Emory University   16
Results of a Phase 1b/2 Study of
 Entospletinib (GS-9973) Monotherapy and
      In Combination With Induction
    Chemotherapy In Newly Diagnosed
  Patients With Acute Myeloid Leukemia

Alison R. Walker1, John C Byrd1, Bhavana Bhatnagar1,Alice Mims1,Tara Lin2, Howland
      E. Croswell3, Danjie Zhang4, Arati V. Rao4, Mark D Minden5, William Blum6
  1The  Ohio State University, Columbus, Ohio, USA; 2University of Kansas Medical Center, Kansas City, Kansas,
USA; 3Bon Secours St. Francis Health System, Greenville, South Carolina, USA, 4Gilead Sciences, Inc., Foster City,
 California, USA; 5Princess Margaret Cancer Centre, Toronto, Ontario, Canada; 6Winship Cancer Institute of Emory
                                        University, Atlanta, Georgia, USA
Role of SYK in AML

♦ Spleen tyrosine kinase (SYK) is a non-receptor tyrosine kinase primarily
  expressed in hematopoietic cells

♦ Constitutive activation of SYK in acute myeloid leukemia (AML) has been
  reported; targeted inhibition of SYK-induced differentiation in vitro
  demonstrated anti-leukemia activity in AML mouse models1

♦ SYK promotes leukemogenesis by directly phosphorylating the FLT3
  receptor, and inducing MEIS1 in conjunction with HOXA9 to form a
  regulatory loop in KMT2A (mixed lineage leukemia [MLL]) rearranged
  leukemia2,3

1. Boros et al. Oncotarget 2015;6:25575–87; 2. Puissant A. Cancer Cell 2014;25:226-42; 3. Mohr S. Cancer Cell 2017;31:549-62.e11.
                                                                                                                                    18
Investigating SYK as Critical Signaling Node in AML

    BONE MARROW STROMAL CELL

                                                                    Hypoxia

     CD33                                                                          CSF-1R
                          β2 Integrin
                              or
                                                       FLT3-ITD
                            FcgRs

                    P      P
                    P      P                                      ROS

                        SYK     Entospletinib    SYK
                                                                              miR-146a
                   pSTAT3/5                     pSTAT5
                                                                           MEIS1
                                                                               HOXA9
                                                                   MLL
                        Survival and             MYC
                                                                  fusion
                        Proliferation
    AML BLAST
                                                                                            19
Study Schema

                                                                                                     Allogeneic Stem
                                                                CR/CRi       Post-Remission          Cell Transplant
                          Lead-in                                               Therapy
                                             Cycle 1–2                                               ENTO + HiDAC*
         Screen            ENTO
                                            ENTO +7+3                       Treatment Failure
                            14 d                                            (if completed 2 cycles   CR MRD+
                                                                 No CR        of combination Rx)
                                                                                                      Maintenance
                                                                                                      ENTO x 1 y

                                                            Phase 1b n=12
                                                    No acute promyelocytic (M3) or
                                                     core binding factor leukemias
                                                             Phase 2 n=41
                                                       All AML patients except M3

*HiDAC: 3 gm/m2
Results: Demographics and Baseline Characteristics
                                                                              Total
                                                                              N=53
     Male, n (%)                                                             31 (58)
     Median age, y (range)                                                  60 (18, 78)
Conclusions
♦KMT2A
   Monotherapy     with
        rearranged AL     ENTO not
                      is sensitive     active
                                   to ENTO withoutside
                                                CR     of KMT2A rearrangement
 observed
   or NPM1on monotherapy
              mutation in AML and high response
rates in AL patients treated with combination therapy.

♦3 CR
   CRwith
      rateENTO
           70%single agentpatients
                in AML     [1 newly diagnosed
                                     treated with ENTO+7+3
AML, 1 R/R AML, 1 ALL +vincristine in t(4;11)]

♦ Overall ENTO is well tolerated and 30-day induction mortality 0%

♦ Higher response rates with SYK inhibition in AML patients with high
  HOXA9/MEIS1 expression

♦ Potential role in subsets of AML: KMT2A, NPM1; further development
  with the Leukemia Lymphoma Society and the BEAT-AML program
                                                                                22
Conclusions
♦ Monotherapy with ENTO not active outside of KMT2A rearrangement
  or NPM1 mutation

♦ CR rate 70% in AML patients treated with ENTO+7+3

♦ Overall ENTO is well tolerated and 30-day induction mortality 0%

♦ Higher response rates with SYK inhibition in AML patients with high
  HOXA9/MEIS1 expression

♦ Potential role in subsets of AML: KMT2A, NPM1; further development
  with the Leukemia Lymphoma Society and the BEAT-AML program
                                                                        23
Case discussion
     • 64 yo female with thrombocytopenia, circulating
       blasts, obesity, diabetes, and longstanding
       dysfunctional (mild) uterine bleeding (fibroids)

       •   WBC 10K, 12% blasts in blood
       •   Hgb 3.8g/dL, PLT 35K
       •   ECOG PS 2, morbid obesity
       •   DM II, remote history of “CHF” believed due to HTN
       •   BMBx, 30% blasts

                                                      Winship Cancer Institute | Emory University   24
Case discussion
     • 64 yo female with thrombocytopenia, circulating
       blasts, obesity, diabetes, and longstanding
       dysfunctional (mild) uterine bleeding (fibroids)

       •   WBC 10K, 12% blasts in blood
       •   Hgb 3.8g/dL, PLT 35K
       •   ECOG PS 2, morbid obesity
       •   DM II, remote history of “CHF” believed due to HTN
       •   BMBx, 30% blasts
       •   AML with myelodysplasia related changes
       •   Complex karyotype
       •   TP53 mutation detected by Master Protocol Screen

                                                      Winship Cancer Institute | Emory University   25
Winship Cancer Institute | Emory University   26
S5: Phase 2 study of Entospletinib (ENTO) plus decitabine in TP53 mutated AML
• Induction/Cycles 1-3
      – All patients will receive ENTO 400mg orally twice daily d1-28 and
        decitabine 20 mg/m2 daily by intravenous infusion over 1 hour for
        d1-10/28 days.
      – A bone marrow biopsy and aspirate will be performed between days 25-30 to determine disease
        status after cycle 1 initiation.
      – When bone marrow CR/CRi (< 5% blasts) has been confirmed, patients will go on to consolidation
        therapy. If NR after 3 cycles, off study.

• Consolidation, decitabine reduced to 5 days for one year, plus ENTO

• Maintenance, ENTO alone

 27
A PHASE 2 STUDY OF
ENTOSPLETINIB IN
NPM1 MUTANT/FLT3
ITD WILD TYPE AML
PATIENTS AGE > 60
YEARS
                                            BAML-16-001-S6
                                                 GILEAD

Protocol Training – Version 2.0 30JUL2017
Uma Borate MD
Background

• NPM1 mutated/FLT3 ITD wildtype group, extended 5 year event free and overall survival
  approximates 0.3-0.40 in younger patients. Outcome for elderly NPM1 patients is considerably
  worse, with a recent update of the CALGB data22 cited above who did not have an early death
  from induction therapy with 7 + 3 chemotherapy using the treatment assignment strategy in
  the umbrella study is shown below
                NPM1 mutated      CR*   1yr DFS 3yr DFS 5yr DFS 1 yr OS 3yr OS 5yr OS
                pts with FLT3- WT

                86               83% 55%%       27%     24%     71%     34%    27%

• Given single agent ENTO activity (not objective response) seen in prior Phase 1b/2…

 29
Study Objectives

• Primary Objectives
      – To determine the overall survival rate at 3 year in NPM1+/FLT3 wt elderly AML
        patients who are treated with ENTO in combination with induction and consolidation
        therapy (Cohort A).
         • Cohort A: The primary endpoint is 3-year overall survival (OS) rate. The null hypothesis is 3-year OS rate is 35% or
           lower. Assuming a true 3-year OS rate of 55%, a total of 62 patients will have 90% power to rule out the null
           hypothesis with a one-sided alpha of 0.025

      – To determine the overall survival rate at 1 year in NPM1+/FLT3 wt elderly AML
        patients of ENTO monotherapy or ENTO + azacitidine (Aza) regimen (Cohort B).
         • Cohort B: The primary endpoint is OS rate at 1-year of ENTO monotherapy or ENTO + azacitidine (Aza) regimen. The
           null hypothesis is a 1-year OS rate of 50% or lower. Assuming a true 1-year OS rate of 70%, a total of 62 patients will
           have 90% power to rule out the null hypothesis with a one-sided alpha of 0.025

 30
Targeting CD200
with Samalizumab,
in combo with
intensive induction
chemotherapy in
CBF+ AML
Approach
Hypothesis
   • Inhibition of CD200 may augment the cytotoxic T-lymphocyte (CTL)
     mediated immune response against CD200-expressing tumor cells

Samalizumab is a CD200 binding humanized mAb,N=blocking
                                                27 patients,interaction    of2-
                                                             assuming a true
CD200 with CD200R on macrophages             year PFS rate of 70%, this
   • Samalizumab monotherapy well tolerated in B-cell malignancies
                                                         expansion will have 90% power to
                                                            rule out a PFS rate of
Targeting IDH1
and IDH2
mutations in older
AML patients

(monotherapy data
courtesy E Stein)
Introduction                                                                    Tumor cell

                                                                     Mitochondrion
              • Somatic IDH1 and IDH2 mutations result
                in accumulation of oncometabolite 2-HG
                                                                                        2-HG      Citrate
                  →epigenetic changes, impaired                       Citrate
                   cellular differentiation                                     2-HG 2-HG
                                                                     Isocitrate
                                                                              2-HG 2-HG Isocitrate
                                                                    IDH2                       IDH1
                                                                          mIDH2       mIDH1
              • mIDH identified in multiple solid and                  αKG                  αKG
                hematologic tumors                                         NADPH
                                                                                                 NADPH
                                    mIDH1     mIDH2
                                                                                  Epigenetic changes
                  % of AML cases   ~6–10%     ~9–13%                               Impaired cellular
                                                                                    differentiation

              • AG-120, AG-221: first-in-class, oral, potent, reversible, selective
                inhibitors of mIDH1/2 enzymes (respectively)
                  • under evaluation in multiple clinical trials as a single agent and in
                    combinations

 2-HG = D-2-hydroxyglutarate; IDH = isocitrate dehydrogenase; mIDH = mutant IDH
                                                                                        Winship Cancer Institute | Emory University   34
Patient below
                  achieved CR                                                       Clinical
                  by end of
                  Cycle 1-IDH1                                                      activity
                                                                                                     Dose escalation
                     Screening
                    44% blasts                                                                    mIDH1                mIDH2
                                                                                                 R/R AML              R/R AML
                                                                                                   n=63                n=109
                                                              CR, (%)                                 16                  20.2
                      Cycle 1                                 CRi/CRp, (%)                            13                   6.8
                       Day 15
                     3% blasts                                PR, (%)                                  2                   2.8
                                                              mCR/MLFS, (%)                            3                   9.2
                                                              SD, (%)                                 43                  53.2
                       Cycle 1                                ORR, (%)                                33                  38.5
                       Day 28
                     2% blasts

CR = complete response; CRi = CR with incomplete neutrophil recovery; CRp = CR with incomplete platelet recovery;
PR = partial response; mCR/MLFS (marrow CR/morphologic leukemia-free state) =
Single agent activity in initial studies in AML
well tolerated…

…S3: AG-221 (Enasidenib) in Beat AML

• Window study of AG-221 monotherapy (CR/CRi by 5th cycle) followed
  by combo with AZA in mIDH2 AML for patients ineligible (or unwilling) to
  receive intensive chemo (following     phase
                           Simon’s two-stage design1with
                                                      component)
                                                         N=27:
                           This modified minimax design has 89% power
                           for our alternative of a 50% CR/CRi rate (rule
                           out
Can we improve
response to HMA
by selecting for
“HMA-sensitizing”
mutations?

--Novel trials in
combo with a
glycoengineered
CD33 antibody
HMA plus BI 836858

• We observed higher BI 836858–mediated ADCC at day 28 after start of
  HMA treatment compared with pre-Rx in ex vivo studies
   • this time point coincided with upregulation of NKG2D ligand(s) in primary
     leukemia samples from HMA-treated patients

                                                Simon’s 2-stage design N=44:
• LLS study includes separate arms for BI plus AZA
                                                This design has 90% power to
   • for “hypomethylating-sensitive” patients (TET2, WT1,  IDH1)
                                                       correctly rule out a CR rate
ITS BEEN A YEAR, WHERE ARE WE NOW?? M1 Screening Status (as of 09JUL2018)
                                                   BAML-16-001-M1 Screening Status
                                                                   Site
                                                                                                       Grand
                                       101   104     105   106   108   110   111     112   113   115
                                                                                                       Total

                Pending FM Report       2    0        0     0     0     0     1      0     0     0       3
                Pending Sub-Protocol
                Consent                 2    0        1     0     0     0     0      0     0     1       4

                S1-CBF                  2    4        0     0     0     0     0      0     0     0       6
Genetic
                S2-HMA/other           10    15       4     3     0     3     6      5     1     0      47
screening
results back    S3-IDH2                13    5        2     2     0     0     1      2     0     0      25
within 8 days
                S4-KMT2A               10    3        2     6     0     0     0      6     0     0      27
in 97%
                S5-TP53                 7    1        5     0     0     0     0      1     0     1      15
                S6-NPM1                 6    2        0     0     0     1     0      1     1     0      11
                S9-TP53                 4    0        0     0     0     1     1      0     0     0       6

                Screen Fail            33    8        4     4     0     4     5      1     2     0      61
                Treatment assigned
                but did not enroll     47    24       11   12     1    10     1      5     2     0      113

                    Grand Total        136   62       29   27     1    19     15     21    6     2      318

                    39
Beat AML abstracts for ASH 2018

• Update to Master protocol

• S2-AZA plus CD33 mAb

• S3-AZA plus IDH2 inhibitor

• NGS profiling thru treatment and at relapse

• More to come!
                                                Winship Cancer Institute | Emory University   40
Clonal evolution from
                            the primary AML to relapse

                            a, The founding clone in the primary
                            tumour with mutations
                            in DNMT3A, NPM1, PTPRT, SMC3 and
                            FLT3; one subclone within the founding
                            clone evolved to become the dominant
                            clone at relapse by acquiring additional
                            mutations

                            b. Model 1 shows the dominant clone in
                            the primary tumour evolving into the
                            relapse clone by gaining relapse-specific
                            mutations;
                            Model 2 shows a minor clone carrying
                            the vast majority of the primary tumour
                            mutations survived and expanded at
                            relapse.
L Ding et al. Nature 2012
Winship Cancer Institute | Emory University   42
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