MAX Enteric Viral Panel-NR - BD
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MAX™ Enteric Viral Panel-NR 443987 For In Vitro Diagnostic Use P0230(04) For use with the BD MAX™ System 2019-05 English English: pages 1 – 16 Español: páginas 17 – 36 INTENDED USE The BD MAX™ Enteric Viral Panel-NR performed on the BD MAX System, is an automated in vitro diagnostic test for the direct qualitative detection and differentiation of enteric viral pathogens. The BD MAX Enteric Viral Panel-NR detects nucleic acids from • Norovirus GI & GII • Rotavirus A Testing is performed on unpreserved soft to diarrheal or Cary-Blair preserved stool specimens from symptomatic patients with suspected acute gastroenteritis, enteritis or colitis. The test is performed directly on the specimen, utilizing real-time polymerase chain reaction (PCR) for the amplification of relevant gene target DNA/RNA. The test utilizes fluorogenic gene-specific hybridization probes for the detection of the amplified DNA. This test is intended for use, in conjunction with clinical presentation, laboratory findings, and epidemiological information, as an aid in the differential diagnosis of Norovirus GI & GII, and Rotavirus A, infections. Results of this test should not be used as the sole basis for diagnosis, treatment, or other patient management decisions. Positive results do not rule out co-infection with other organisms that are not detected by this test, and may not be the sole or definitive cause of patient illness. Negative results in the setting of clinical illness compatible with gastroenteritis may be due to infection by pathogens that are not detected by this test or non-infectious causes such as ulcerative colitis, irritable bowel syndrome, or Crohn’s disease. SUMMARY AND EXPLANATION OF THE PROCEDURE Organisms that cause enteric diseases represent a significant cause of morbidity and mortality worldwide. Enteric pathogens enter the body through the gastrointestinal tract and typically are spread via contaminated food and water or contact with vomit or feces. The Centers for Disease Control and Prevention (CDC) estimates that each year there are 48 million cases of foodborne illness in the United States resulting in 128,000 hospitalizations and 3,000 deaths.1 In the developing world, these illnesses cause approximately 2 million deaths annually in young children.2 Each of the causative agents may result in slightly different symptomology, including abdominal cramps or pain, loss of appetite, nausea or vomiting; however, all result in diarrhea.3 Repeated bouts of diarrhea and persistent diarrheal disease disrupt intestinal function and absorption, potentially leading to childhood malnutrition and growth retardation.4 The BD MAX Enteric Viral Panel-NR performed on the BD MAX System, can provide results for the BD MAX Enteric Viral Panel- NR targets for 24 specimens in approximately 3 hours. The BD MAX Enteric Viral Panel-NR simultaneously detects the pathogens responsible for gastroenteritis due to Norovirus GI & GII, and Rotavirus A. The assay includes an internal Sample Processing Control. The BD MAX Enteric Viral Panel-NR automates the testing process and minimizes operator intervention from the time the sample is placed onto the BD MAX System until results are available. A soft to diarrheal stool specimen is collected and transported to the laboratory, homogenized and looped into a BD MAX Enteric Viral Panel Sample Buffer Tube. The Sample Buffer Tube is placed into the BD MAX System and the following automated procedures occur: the viral capsids are lysed, DNA/RNA is extracted on magnetic beads and concentrated and then an aliquot of the eluted DNA/RNA is added to PCR reagents which contain the gene-specific primers used to amplify the genetic targets in the BD MAX PCR Cartridge, if present. The assay also includes a Sample Processing Control. The Sample Processing Control is present in the Extraction Tube and undergoes the extraction, concentration and amplification steps to monitor for inhibitory substances, instrument or reagent failure. No operator intervention is necessary once the clinical specimen, the BD MAX Unitized Reagent Strip and the BD MAX PCR Cartridge are loaded into the BD MAX System. The BD MAX System automates sample lysis, DNA/RNA extraction and concentration, reagent rehydration, nucleic acid amplification and detection of the target nucleic acid sequence using real-time polymerase chain reaction (PCR). Amplified targets are detected with hydrolysis probes labeled with quenched fluorophores. The amplification, detection and interpretation of the signals are done automatically by the BD MAX System.
PRINCIPLES OF THE PROCEDURE Stool specimens are collected from subjects and transported to the laboratory unpreserved in a clean container or preserved in Cary-Blair transport media. A loop is inserted to the depth of the loop into the specimen and expressed via swirling motion into a BD MAX Sample Buffer Tube included in the BD MAX Enteric Viral Panel-NR kit. The Sample Buffer Tube is closed with a septum cap, vortexed and transferred to the BD MAX System. Once the work list is generated and the specimen is loaded on the BD MAX instrument, along with a BD MAX Enteric Viral Panel Unitized Reagent Strip and PCR Cartridge, the run is started and no further operator intervention is required. The BD MAX System automates specimen preparation, including target organism lysis, DNA/RNA extraction and concentration, reagent rehydration, target nucleic acid sequence amplification and detection using real- time PCR. The interpretation of the signal is performed automatically by the BD MAX System. The assay also includes a Sample Processing Control that is provided in the Extraction Tube and subjected to extraction, concentration and amplification steps. The Sample Processing Control monitors for the presence of potential inhibitory substances as well as system or reagent failures. Following enzymatic viral lysis at elevated temperature, the released nucleic acids are captured by magnetic affinity beads. The beads, with the bound nucleic acids, are washed and the nucleic acids are eluted. Eluted DNA/RNA is neutralized and transferred to the Master Mix tubes to rehydrate the PCR reagents. After rehydration, the BD MAX System dispenses a fixed volume of PCR-ready solution into the BD MAX PCR Cartridge. Microvalves in the BD MAX PCR Cartridge are sealed by the system to prevent evaporation and amplicon contamination prior to the initiation of reverse transcriptase PCR to convert RNA to cDNA and subsequent real time PCR. The amplified DNA targets are detected using hydrolysis (TaqMan®) probes labeled at one end with a fluorescent reporter dye (fluorophore) and at the other end with a quencher moiety. Probes labeled with different fluorophores are used to detect the amplicons of the viral targets (Norovirus GI & GII, and Rotavirus A) and the Sample Processing Control amplicons in three different optical channels of the BD MAX System. When the probes are in their native state, the fluorescence of the fluorophore is quenched due to its proximity to the quencher. However, in the presence of target DNA, the probes hybridize to their complementary sequences and are hydrolyzed by the 5′–3′ exonuclease activity of the DNA polymerase as it synthesizes the nascent strand along the cDNA template. As a result, the fluorophores are separated from the quencher molecules and fluorescence is emitted. The BD MAX System monitors these signals at each cycle, and interprets the data at the end of the program to report the final results. REAGENTS AND MATERIALS REF Contents Quantity BD MAX™ Enteric Viral Panel Master Mix (D6) 24 tests Dried PCR Master Mix containing DNA polymerase, nucleotides, target and (2 x 12 tubes) Sample Processing Control specific probes and primers. BD MAX™ Enteric Viral Panel Unitized Reagent Strips Reagent strips containing all liquid reagents and disposable pipette tips necessary for 24 tests sample processing and DNA/RNA extraction. BD MAX™ Enteric Viral Panel Extraction Tube (D4) 443987 24 tests Dried extraction reagent containing DNA/RNA magnetic affinity beads, Proteinase K, (2 x 12 tubes) and Sample Processing Control 24 tests BD MAX™ Enteric Viral Panel Sample Buffer Tube (2 x 12 tubes) BD MAX™ Disposable Inoculation Loops 30 (required for use with the assay) Septum Caps 25 2
EQUIPMENT AND MATERIALS REQUIRED BUT NOT PROVIDED • BD MAX™ PCR Cartridges (BD Diagnostic Systems Catalog no. 437519) • VWR Multi-Tube Vortexer or equivalent (VWR, Cat. No. 58816-115) • Vortex Genie 2 or equivalent (VWR, Cat. No. 58815-234) • Nalgene™ Cryogenic Vial Holder (VWR, Cat. No. 66008-783) • Rack compatible with a multi-tube vortex mixer (e.g., Cryogenic Vial Holder or equivalent) • Lab coat and disposable gloves, powderless • Stopwatch or timer For “Unpreserved” stool specimen type: • Dry, clean containers for collection of liquid or soft stool specimens. For preserved stool specimen type: • Cary-Blair transport media (15 mL). WARNINGS AND PRECAUTIONS Danger H360 May damage fertility or the unborn child. P280 Wear protective gloves/protective clothing/eye protection/face protection. P201 Obtain special instructions before use. P202 Do not handle until all safety precautions have been read and understood. P308+P313 IF exposed or concerned: Get medical advice/attention. P405 Store locked up. P501 Dispose of contents/container in accordance with local/regional/national/international regulations. • The BD MAX Enteric Viral Panel-NR is for in vitro diagnostic use only. • BD MAX Disposable Inoculating Loops are required for use with the BD MAX Enteric Viral Panel-NR and packaged with the assay kit. General loops, regardless of type and volume, are not recommended for use and not validated with the BD MAX Enteric Viral Panel-NR performance. • Local, state, and federal rules and regulations for notification of reportable diseases are continually updated and include a number of organisms that are important for surveillance and outbreak investigations.5,6 Laboratories are responsible for following their state and/or local rules pertaining to reportable pathogens and should consult their local and/or state public health laboratories for isolate and/or clinical sample submission guidelines. • This product can only be used on the BD MAX System. • Do not use expired reagents and/or materials. • Do not use the kit if the label that seals the outer box is broken upon arrival. • Do not use reagents if the protective pouches are open or broken upon arrival. • Do not use reagents if desiccant is not present or is broken inside reagent pouches. • Do not remove desiccant from reagent pouches. • Close protective pouches of reagent promptly with the zip seal after each use. Remove any excess air in the pouches prior to sealing. • Protect reagents against heat and humidity. Prolonged exposure to humidity may affect product performance. • Do not use reagents if the foil has been broken or damaged. • Do not mix reagents from different pouches and/or kits and/or lots. • Do not interchange or reuse caps, as contamination may occur and compromise test results. • Check Unitized Reagent Strips for proper liquid fills (ensure that the liquids are at the bottom of the tubes [refer to Figure 1]). • Check Unitized Reagent Strips to ensure that all pipette tips are present (refer to Figure 1). • Proceed with caution when using chemical solutions as Master Mix and Extraction tube barcode readability may be altered. • Good laboratory technique is essential to the proper performance of this assay. Due to the high analytical sensitivity of this test, extreme care should be taken to preserve the purity of all materials and reagents. • In case other PCR tests are conducted in the same general area of the laboratory, care must be taken to ensure that the BD MAX Enteric Viral Panel-NR, any additional reagents required for testing, and the BD MAX System are not contaminated. Avoid microbial, deoxyribonuclease (DNase), and ribonuclease (RNase) contamination of reagents at all times. Gloves must be changed before manipulating reagents and cartridge. • To avoid contamination of the environment with any target amplicons, do not break apart the BD MAX PCR Cartridge after use. The seals in the BD MAX PCR Cartridges are designed to prevent contamination. • The laboratory should routinely perform environmental monitoring to minimize the risk of cross-contamination. • Performing the BD MAX Enteric Viral Panel-NR outside of the recommended time and temperature ranges recommended for specimen transport and storage may produce invalid results. Assays not performed within specified time and temperature ranges should be repeated. • Additional controls may be tested according to guidelines or requirements of local, state, provincial and/or federal regulations or accrediting organizations. 3
• Always handle specimens as if they are infectious and in accordance with safe laboratory procedures such as those described in CLSI Document M297 and in Biosafety in Microbiological and Biomedical Laboratories.8 • Wear protective clothing and disposable gloves while handling all reagents. • Wash hands thoroughly after performing the test. • Do not pipette by mouth. • Do not smoke, drink or eat in areas where specimens or kit reagents are being handled. • Dispose of unused reagents and waste in accordance with country, federal, provincial, state and local regulations. • Consult the BD MAX System User’s Manual9 for additional warnings, precautions and procedures. STORAGE AND STABILITY Collected specimens, either unpreserved stool or stool stored in 15 mL Cary-Blair transport media should be kept between 2 °C and 25 °C during transport. Protect against exposure to excessive heat. Specimen can be stored for up to 120 hours (5 days) at 2–8 °C or for up to 48 hours at 2–25 °C before testing. BD MAX Enteric Viral Panel Master Mix is stable at 2–25 °C through the stated expiration date. Do not use expired components. BD MAX Enteric Viral Panel Master Mix Tubes are provided in sealed pouches. To protect product from humidity, immediately re-seal after opening. Master Mix tubes are stable for up to 14 days at 2–25 °C after initial opening and re-sealing of the pouch. INSTRUCTIONS FOR USE Specimen Collection/Transport In order to obtain an adequate specimen, the procedure for specimen collection must be followed closely. Using a dry, clean container, liquid or soft stool specimens are collected according to the following procedure: 1. Unpreserved specimens: Transfer the liquid or soft stool specimen to a dry, clean container. Avoid contamination with water or urine and avoid mixing toilet paper or soap with the specimen. Label the container and transport to the laboratory according to institutional standard operating procedures (refer to the Storage and Stability section). 2. Cary-Blair preserved specimens: Transfer the liquid or soft stool specimen to a 15 mL transport device according to the manufacturer’s instructions. Avoid contamination with water or urine and avoid mixing toilet paper or soap with the specimen. Label the container and transport to the laboratory according to institutional standard operating procedures (refer to the Storage and Stability section). Specimen Preparation NOTE: One (1) Sample Buffer Tube, one (1) Septum Cap, one (1) Master Mix Tube (D6), one (1) Extraction Tube (D4) and one (1) Unitized Reagent Strip are required for each specimen and each External Control to be tested. Set aside the required number of materials from their protective pouches or boxes. To store opened Master Mix or Extraction Tube pouches, remove excess air and close using the zip seal. 1. Label a bar-coded BD MAX Sample Buffer Tube (clear cap) with the appropriate specimen identification. Do not obscure, write or label over the 2D-barcode. 2. Vortex unpreserved or Cary-Blair preserved specimens at high speed for 15 seconds. 3. Remove the clear cap from the Sample Buffer Tube and inoculate as follows: a. Insert a disposable inoculation loop until the entire loop portion is submerged in the specimen. Do not insert beyond the loop as any additional stool on the shaft can overload the PCR reaction; b. Insert the loaded loop into the Sample Buffer Tube and express the specimen using a swirling motion. NOTE: Removal of the entire specimen from the loop is not necessary. The resultant Sample Buffer Tube solution should be “tea-stained” in color. 4. Recap the inoculated Sample Buffer Tube using a Septum Cap. 5. Place the Sample Buffer Tube in a rack compatible with a multi-tube vortex mixer, if available (e.g., cryogenic vial holder or equivalent). 6. Prepare any additional specimens for testing by repeating Steps 1 through 5, ensuring gloves are clean prior to handling additional specimens. 7. Vortex all prepared samples simultaneously at maximum speed for one (1) minute with the multi-tube vortex mixer. 8. Proceed to BD MAX System Operation section to perform testing of the BD MAX Enteric Viral Panel-NR on the BD MAX System. BD MAX System Operation NOTE: Refer to the BD MAX System User’s Manual9 for detailed instructions (refer to “Operation section”). 4
NOTE: Testing of the BD MAX Enteric Viral Panel-NR must be performed immediately after the vortexing step above (refer to “Specimen Preparation”, Step 7). If retesting is necessary, re-vortex sample(s). 1. Power on the BD MAX System (if not already done) and log in by entering and . 2. Gloves must be changed before manipulating reagents and cartridges. 3. Remove the required number of Unitized Reagent Strips from the BD MAX Enteric Viral Panel-NR kit. Gently tap each Unitized Reagent Strip onto a hard surface to ensure that all the liquids are at the bottom of the tubes. 4. Remove from the protective pouches the required number of Extraction Tube(s) and Master Mix Tube(s) from the BD MAX Enteric Viral Panel-NR kit. 5. Remove excess air, and close pouches with the zip seal. 6. For each sample to be tested, place one (1) Unitized Reagent Strip on the BD MAX System Rack, starting with Position 1 of Rack A. 7. Snap one (1) Extraction Tube (D4) (white foil) into each Unitized Reagent Strip in Position 1 as shown in Figure 1. 8. Snap one (1) BD MAX Enteric Viral Panel Master Mix tube (D6) (green foil) into each Unitized Reagent Strip in Position 2 as shown in Figure 1. Figure 1: Snap BD MAX Enteric Viral Panel Extraction tubes and BD MAX Enteric Viral Panel Master Mix tubes into Unitized Reagent Strips 9. Click on the Run Tab and then the Inventory subtab, enter the kit lot number for the BD MAX Enteric Viral Panel-NR and master mix lot number for the BD MAX Enteric Viral Panel-NR (for lot traceability) by either scanning the barcode with the scanner or by manual entry. NOTE: Repeat step 9 each time a new kit lot is used. 10. Navigate to the Worklist. Using the pull down menu select . 11. Select the appropriate kit lot number (found on the outer box of the BD MAX Enteric Viral Panel-NR) and master mix lot number for BD MAX Enteric Viral Panel-NR from the pull down menu. 12. Enter the BD MAX Enteric Viral Panel Sample Buffer Tube ID, Patient ID and Accession Number (if applicable) into the Worklist, either by scanning the barcode with the scanner or by manual entry. 13. Repeat step 12 for all remaining Sample Buffer Tubes. 14. Place the Sample Buffer Tubes in the BD MAX System Rack(s) corresponding to the Unitized Reagent Strips assembled in steps 6 to 8. NOTE: Place the Sample Buffer Tubes into the specimen rack with 1D barcode labels facing outward (this makes scanning Sample Buffer Tubes easier during sample login). 15. Place the required number of BD MAX PCR Cartridge(s) into the BD MAX System (refer to Figure 2): • Each BD MAX PCR Cartridge accommodates 1 run of up to 12 samples for a total of 12 samples. • The BD MAX System will automatically select the position and row on the BD MAX PCR Cartridge for each run. • BD MAX PCR Cartridges are used on a per-run AND rack basis (1 run per cartridge and 1 cartridge per rack). • To maximize use of BD MAX PCR Cartridges, using 2000 Sample Mode, select Run Wizard under the Worklist tab for lane assignments. • Consult the BD MAX System User’s Manual9 for more details. 5
Figure 2: Load BD MAX PCR Cartridges 16. Load rack(s) into the BD MAX System (refer to Figure 3). Side A Side B Figure 3: Load Rack(s) into the BD MAX System 17. Close the BD MAX System lid and click the to begin processing. 18. At the end of the run, check results immediately or store Sample Buffer Tubes at 2–8 °C for up to 5 days (120 hours) OR at 2–25 °C for a maximum of 48 hours until the results are checked. NOTE: If a septum cap was damaged during the run, replace it with a new one before storing the sample. NOTE: Prepared BD MAX Sample Buffer Tubes can be stored at 2–8 °C for a maximum of 120 hours (5 days) OR at 2–25 °C for a maximum of 48 hours. When an Indeterminate (IND), Unresolved (UNR), or Incomplete (INC) result is obtained, or when an External Control failure occurs, a repeat test from the prepared Sample Buffer Tube must be performed within this timeframe (refer to Repeat Test Procedure section). QUALITY CONTROL Quality control procedures monitor the performance of the assay. Laboratories must establish the number, type and frequency of testing control materials according to guidelines or requirements of local, provincial, state, federal and/or country regulations or accreditation organizations in order to monitor the effectiveness of the entire analytical process. For general Quality Control guidance, the user may wish to refer to Clinical Laboratory Standards Institute documents MM310 and EP12.11 1. External Control materials are not provided by BD. External Positive and Negative Controls are not used by the BD MAX System software for the purpose of sample test result interpretation. External Controls are treated as if they were patient samples. (Refer to Table 2 for the interpretation of External Control assay results.) 2. One (1) External Positive Control and one (1) External Negative Control should be run at least daily until adequate process validation is achieved on the BD MAX System in each laboratory setting. Reduced frequency of control testing should be in accordance with applicable regulations. 3. The External Positive Control is intended to monitor for substantial reagent failure. The External Negative Control is intended to detect reagent or environmental contamination (or carry-over) by target nucleic acids. 6
4. Various types of External Controls are recommended to allow the user to select the most appropriate for their laboratory quality control program. a. External Negative Control: Commercially available control material or a previously characterized sample known to be negative. BD recommends that the External Negative Control be prepared prior to the External Positive Control in order to reduce the potential for contamination as a result of control preparation. b. External Positive Control: Commercially available control materials, such as the ZeptoMetrix® strains listed below (Refer to Table 1), or previously characterized samples known to be positive. Table 1: Commercially Available Strains for External Positive Control External Positive Control Strain Part Number Rotavirus A ZeptoMetrix 0810041CF or 0810281CF Recombinant Norovirus GI or GII ZeptoMetrix 0810086CF or 0810087CF For the preparation of External Control suspension, it is recommended that each viral culture fluid be diluted with a 1:10 dilution in TE buffer. Inoculate 5 μL of the viral suspension into the corresponding Sample Buffer Tube. Process and test as a sample (refer to the Specimen Preparation and BD MAX System operation sections). 5. All External Controls should yield the expected results (positive for External Positive Control, negative for External Negative Control) and no failed external controls (Unresolved, Indeterminate, Incomplete results). 6. An External Negative Control that yields a positive test result is indicative of a specimen handling and/or contamination event. Review the specimen handling technique to avoid mix-up and/or contamination. An External Positive Control that yields a negative result is indicative of a specimen handling/preparation problem. Review the specimen handling/preparation technique. 7. An External Control that yields an Unresolved, Indeterminate or Incomplete test result is indicative of a reagent or a BD MAX System failure. Check the BD MAX System monitor for any error messages. Refer to the “System Error Summary” section of the BD MAX System User’s Manual9 for interpretation of warning and error codes. If the problem persists, use reagents from an unopened pouch or use new BD MAX Enteric Viral Panel-NR kit. 8. Each BD MAX Enteric Viral Panel Extraction Tube contains a Sample Processing Control which is an Armored RNA construct containing a synthetic target RNA sequence. The Sample Processing Control is extracted, eluted and amplified along with any DNA/RNA present in the processed specimen, ensuring predictivity of the assay. The Sample Processing Control monitors the efficiency of DNA/RNA capture, washing and elution during the sample processing steps, as well as the efficiency of RNA conversion to DNA and DNA target amplification and detection during PCR analysis. If the Sample Processing Control result fails to meet the acceptance criteria, the result of the sample will be reported as Unresolved; however, any positive (POS) assay results will be reported and no targets will be called negative (NEG). This will be reported on a per Master Mix basis. An Unresolved result is indicative of specimen-associated inhibition or reagent failure. Repeat any sample reported as Unresolved according to the “Repeat Test Procedure” section below. RESULTS INTERPRETATION Results are available on the tab in the window on the BD MAX System monitor. The BD MAX System software automatically interprets test results. Results are reported for each of the analytes and for the Sample Processing Control. A test result may be called as NEG (negative), POS (positive) or UNR (unresolved) based on the amplification status of the target and of the Sample Processing Control. IND (Indeterminate) or INC (Incomplete) results are due to BD MAX System failure. In the case of a partial UNR, where one target has a POS result and the other target has a UNR result, the target with a UNR result will not be called NEG. This will be reported on a per Master Mix basis. BD MAX Enteric Viral Panel-NR results interpretation is described below in Table 2. Table 2: BD MAX Enteric Viral Panel-NR Result Interpretation ASSAY RESULT REPORTED INTERPRETATION OF RESULT NoV POS Norovirus GI or GII RNA detected RoV POS Rotavirus A RNA detected NoV NEG No Norovirus RNA detected and Sample Processing Control detected RoV NEG No Rotavirus A RNA detected and Sample Processing Control detected No Norovirus GI or GII RNA detected and no Sample Processing Control is detected NoV UNR (indicative of an inhibitory specimen or reagent failure) No Rotavirus A RNA detected and no Sample Processing RoV UNR Control detected (indicative of an inhibitory specimen or reagent failure) Indeterminate due to BD MAX System failure Indeterminate (IND) (with Warning or Error Codesa) Incomplete Run Incomplete (INC) (with Warning or Error Codesa) a Refer to “Troubleshooting” section of the BD MAX System User’s Manual9 for interpretation of warning and error codes. 7
REPEAT TEST PROCEDURE NOTE: Sufficient volume is available for one repeat test from the Sample Buffer Tube. For Sample Buffer Tubes stored at 2–25 °C, retesting must be performed within 48 h following the initial Sample Buffer Tube inoculation with the specimen. Alternatively, for Sample Buffer Tubes stored at 2–8 °C, retesting may be performed within 120 hours (5 days) following the initial Sample Buffer Tube inoculation with the specimen. The remaining stool specimen may also be used for repeat testing within 120 hours (5 days) of collection if stored at 2–8 °C or within 48 hours if stored at 2–25 °C. NOTE: New samples may be tested in the same run with repeat samples. UNRESOLVED RESULT Unresolved results may be obtained in the event that sample-associated inhibition or a reagent failure prevents proper target or Sample Processing Control amplification. If the Sample Processing Control does not amplify, the sample will be reported as UNR; however, any positive (POS) assay results will be reported and all other targets will be called UNR. The BD MAX System reports results for each target individually and a UNR result may be obtained for one or more BD MAX Enteric Viral Panel-NR targets. In the case of a complete UNR, where all targets have a UNR result, it is necessary to repeat the test. In the case of a partial BD MAX Enteric Viral Panel-NR UNR result, when one target has a POS result and the other target has a UNR result, the test should be repeated as described above. In rare cases, discrepant results may be observed when a repeat test is run for those targets that were initially reported as POS. In that case, any positive result is retained. Sample(s) can be repeated from their corresponding Sample Buffer Tube(s) within the timeframes defined above. Vortex the sample(s) for one (1) min and restart from the “BD MAX System Operation” section. The remaining stool specimen may also be used for repeat testing with a new Sample Buffer Tube within the timeframes defined above. Restart from the Specimen Preparation section. INDETERMINATE RESULT Indeterminate results may be obtained in the event that a System failure occurs. Sample(s) can be repeated from their corresponding Sample Buffer Tube(s) within the timeframes defined above. Vortex the sample(s) for one (1) minute and restart following the “BD MAX System Operation” section. The remaining stool specimen, with a new Sample Buffer Tube, may also be used for repeat testing within the timeframe defined above. Restart from the Specimen Preparation section. For the interpretation of warning or error code messages, refer to the BD MAX User’s Manual9 (Refer to “Troubleshooting” section). INCOMPLETE RESULT Incomplete results may be obtained in the event that the Specimen Preparation or the PCR failed to complete. Sample(s) can be repeated from their corresponding Sample Buffer Tube(s) within the timeframes defined above. Vortex the sample(s) for one (1) minute and restart following “BD MAX System Operation” section. The remaining stool specimen, with a new Sample Buffer Tube, may also be used for repeat testing within the timeframe defined above. Restart from the Specimen Preparation section. For the interpretation of warning or error code messages, refer to the BD MAX System User’s Manual9 (Refer to “Troubleshooting” section). EXTERNAL CONTROL FAILURE External Controls should yield expected results when tested. If samples have to be repeated due to an incorrect External Control result, they should be repeated from their Sample Buffer Tubes along with freshly prepared External Controls within the timeframes defined above. Vortex the samples for one (1) minute and restart following the “BD MAX System Operation” section. CULTURING OF SPECIMENS Culture and identification of organisms from positive specimens should be performed per laboratory procedures. LIMITATIONS OF THE PROCEDURE • This product should only be used with the BD MAX System. • This product is intended for use only with unpreserved and Cary-Blair preserved human stool specimens. Stool specimens from rectal swabs or fixed stools have not been validated with the BD MAX Enteric Viral Panel-NR. • Erroneous results may occur from improper specimen collection, handling, storage, technical error, specimen mix-up or because the number of organisms in the specimen is below the analytical sensitivity of the test. • If the BD MAX Enteric Viral Panel-NR result is IND, INC, or UNR (for one or more targets) then the test should be repeated. • A BD MAX Enteric Viral Panel-NR positive result does not necessarily indicate the presence of viable organisms. It does however indicate the presence of target DNA/RNA. • Mutations or polymorphisms in primer- or probe-binding regions may affect detection of new or unknown target variants, resulting in a false negative result with the BD MAX Enteric Viral Panel-NR. • The BD MAX Enteric Viral Panel-NR simultaneously detects Norovirus GI & GII, and does not differentiate between the species. • As with all PCR-based tests, extremely low levels of target below the LoD of the assay may be detected, but results may not be reproducible. • False negative results may occur due to loss of nucleic acid from inadequate collection, transport or storage of specimens, or due to inadequate viral lysis. The Sample Processing Control has been added to the test to aid in the identification of samples that contain inhibitors to PCR amplification and as a control for reagent integrity and of the assay system as a whole. The Sample Processing Control does not indicate if nucleic acid has been lost due to inadequate collection, transport or storage of samples, or whether viral capsids have been adequately lysed. • Results from the BD MAX Enteric Viral Panel-NR should be used as an adjunct to clinical observations and other information available to the physician. 8
• As with all in vitro diagnostic tests, positive and negative predictive values are highly dependent on prevalence. The BD MAX Enteric Viral Panel-NR performance may vary depending on the prevalence and population tested. • BD MAX Enteric Viral Panel-NR results may or may not be affected by concurrent medical therapy, which may reduce the amount of target present. • The Sample Buffer Tube has not been designed to support organism viability. If culture is necessary it must be performed from the original specimen. • The performance of this test has not been established for monitoring treatment of Norovirus GI & GII, and Rotavirus A infections. • This test is a qualitative test and does not provide quantitative values nor indicate the quantity of organisms present. • The performance of this test has not been evaluated for immunocompromised individuals or for patients without symptoms of gastrointestinal infection. • The effect of interfering substances has only been evaluated for those listed in this labeling. Potential interference has not been evaluated for substances other than those described in the Interference section below. Interference by substances other than those described in the interference section below could lead to erroneous results. • BD MAX Enteric Viral Panel-NR assay performance has not been evaluated in individuals who have received the Rotavirus A vaccine, which is known to react with this assay. • Cross-reactivity with organisms other than those listed in the Analytical Specificity section below has not been evaluated. EXPECTED VALUES In the BD MAX Enteric Viral Panel-NR trial, reportable results were obtained from six (6) geographically diverse clinical centers. The study was performed from two (2) stool specimen types, Cary-Blair preserved and unpreserved. The number and percentage of positive cases per target, as determined in the BD MAX Enteric Viral Panel-NR trial, are presented in Table 3. Table 3: Expected Values Rate based on BD MAX Enteric Viral Panel-NR Assay Results by Specimen Type, Site and Overall Specimen Type Site Norovirus Rotavirus ALB 7.7% (4/52) 0.0% (0/52) CIN 15.0% (59/394) 6.9% (27/394) Cary-Blair Preserved JHU 9.8% (13/132) 4.5% (6/132) POR 3.9% (14/359) 1.9% (7/359) Total 9.6% (90/937) 4.3% (40/937) CAL 5.4% (31/574) 1.0% (6/574) CIN 0.0% (0/3) 33.3% (1/3) JHU 13.8% (9/65) 0.0% (0/65) Unpreserved LUR 10.1% (10/99) 5.1% (5/99) POR 23.1% (3/13) 7.7% (1/13) Total 7.0% (53/754) 1.7% (13/754) ALB 7.7% (4/52) 0.0% (0/52) CAL 5.4% (31/574) 1.0% (6/574) CIN 14.9% (59/397) 7.1% (28/397) Combined JHU 11.2% (22/197) 3.0% (6/197) LUR 10.1% (10/99) 5.1% (5/99) POR 4.6% (17/372) 2.2% (8/372) Total 8.5% (143/1,691) 3.1% (53/1,691) 9
PERFORMANCE CHARACTERISTICS Clinical Performance characteristics of the BD MAX Enteric Viral Panel-NR were determined in a multi-site investigational study. The study involved a total of six (6) geographically diverse clinical centers where stool specimens were collected as part of routine patient care, enrolled into the trial, and tested with the BD MAX Enteric Viral Panel-NR. Specimens were obtained from pediatric or adult patients suspected of acute gastroenteritis, enteritis or colitis, for whom diagnostic procedures were indicated and/or ordered by a healthcare provider. The reference method for the prospective specimens was a combination of two (2) sets of alternate PCRs and bi-directional sequencing for one (1) PCR. All prospective specimens were tested fresh (stored 2–8 °C and within 5 days of collection) with the BD MAX Enteric Viral Panel-NR Assay, but frozen prior to testing with the reference method. For retrospective specimens, the historical results were recorded at the collection site. All retrospective specimens were frozen prior to testing on the BD MAX Enteric Viral Panel-NR Assay and the reference method. The historical results were confirmed using an alternate PCR assay and bi-directional sequencing in order to confirm the presence of the target DNA. A total of 1,873 prospective specimens (1,055 Cary-Blair preserved and 818 unpreserved) and 366 retrospective specimens (136 Cary-Blair preserved and 230 unpreserved) were enrolled in the clinical evaluation for a total of 2,239 specimens enrolled. Table 4 describes the number of compliant specimens enrolled by patient age and specimen type with a total of 2,148 compliant specimens overall. Tables 5 and 6 describe the performance characteristics of the BD MAX Enteric Viral Panel-NR that were observed during the clinical trial. Table 4: Compliant Clinical Trial Enrollment Summary by Age Group and Specimen Type Age Group Cary-Blair Preserved Unpreserved Combined 0–1 month 4 0 4 1 month to 2 years 188 112 300 2–12 228 153 381 13–18 117 66 183 19–21 20 21 41 Over 21 568 640 1,208 Unknown 21 10 31 Total 1,146 1,002 2,148 Norovirus Performance Results For the Cary-Blair preserved specimen type, the BD MAX Enteric Viral Panel-NR identified 92.5% and 99.2% of the Norovirus prospective positive and negative specimens, respectively, and 100% and 99.1% of the retrospective positive and negative specimens, respectively. For the unpreserved specimen type, the BD MAX Enteric Viral Panel-NR identified 90.7% and 99.6% of the Norovirus prospective positive and negative specimens, respectively and 94.6% and 100% of the Norovirus retrospective positive and negative specimens, respectively. Refer to Table 5. Table 5. Norovirus- Performance Results per Specimen Type and Origin RM Specimen Type Specimen Origin BD MAX Total P N P 74 7a 81 Prospective Cary-Blair Preserved N 6b 835 841 (Fresh) Total 80 842 922 PPA (95% CI): 92.5% (84.6%, 96.5%) NPA (95% CI): 99.2% (98.3%, 99.6%) P 6 1 7 Retrospective Cary-Blair Preserved N 0 105 105 (Frozen) Total 6 106 112 PPA (95% CI): 100% (61%, 100%) NPA (95% CI): 99.1% (94.8%, 99.8%) P 39 3 42 Prospective Unpreserved N 4 694 698 (Fresh) Total 43 697 740 PPA (95% CI): 90.7% (78.4%, 96.3%) NPA (95% CI): 99.6% (98.7%, 99.9%) P 35 0 35 Retrospective Unpreserved N 2 58 60 (Frozen) Total 37 58 95 PPA (95% CI): 94.6% (82.3%, 98.5%) NPA (95% CI): 100% (93.8%, 100%) a 7/7 Specimens were available to be tested in discrepant analysis and 4/7 tested positive for Norovirus with the FilmArray™ Gastrointestinal Panel. b 6/6 Specimens tested negative for Norovirus during discrepant analysis with the FilmArray Gastrointestinal Panel. 10
Rotavirus Performance Results For the Cary-Blair preserved specimen type, the BD MAX Enteric Viral Panel-NR identified 100% and 99.2% of the Rotavirus prospective positive and negative specimens, respectively, and 100% and 98.7% of the Rotavirus retrospective positive and negative specimens, respectively. For the unpreserved specimen type, the BD MAX Enteric Viral Panel-NR identified 100% and 99.9% of the Rotavirus prospective positive and negative specimens, respectively and 100% and 97.9% of the Rotavirus retrospective positive and negative specimens, respectively. Refer to Table 6. Table 6. Rotavirus- Performance Results per Specimen Type and Origin RM Specimen Type Specimen Origin BD MAX Total P N P 31 7a 38 Prospective Cary-Blair Preserved N 0 888 888 (Fresh) Total 31 895 926 PPA (95% CI): 100% (89%, 100%) NPA (95% CI): 99.2% (98.4%, 99.6%) P 38 1 39 Retrospective Cary-Blair Preserved N 0 76 76 (Frozen) Total 38 77 115 PPA (95% CI): 100% (90.8%, 100%) NPA (95% CI): 98.7% (93%, 99.8%) P 11 1 12 Prospective Unpreserved N 0 735 735 (Fresh) Total 11 736 747 PPA (95% CI): 100% (74.1%, 100%) NPA (95% CI): 99.9% (99.2%, 100%) Retrospective P 56 1 57 Unpreserved (Frozen) N 0 47 47 Total 56 48 104 PPA (95% CI): 100% (93.6%, 100%) NPA (95% CI): 97.9% (89.1%, 99.6%) a 7/7 Specimens were available to be tested in discrepant analysis and 4/7 tested positive for Rotavirus with the FilmArray Gastrointestinal Panel. NON-REPORTABLE RATE The initial unresolved rate of the 1,873 prospective specimens evaluated in this study was 0.8% of the Cary-Blair preserved and 1.8% of the unpreserved specimens. The unresolved rate following a valid repeat test was only 0.1% of the Cary-Blair preserved specimens and 1.0% of the unpreserved specimens (refer to Table 7). Of the 1,873 prospective specimens evaluated in this study, 0.5% of the Cary-Blair preserved and 2.2% of the unpreserved initially reported as Indeterminate. Following a valid repeat test, 0.1% of the Cary-Blair preserved and none of the unpreserved specimens remained Indeterminate (refer to Table 7). Of the 1,873 prospective specimens evaluated in this study, 0.1% of the Cary-Blair preserved and 0.3% of the unpreserved specimens initially reported as Incomplete. Following a valid repeat test, 0.1% of the Cary-Blair preserved and none of the unpreserved specimens remained Incomplete (refer to Table 7). Table 7: Non-reportable Rates for Combined Target by Specimen Type and Overall Combined Unresolved Rate Indeterminate Rate Incomplete Rate Total Rate Target Specimen Initial EVP Final EVP Initial EVP Final EVP Initial EVP Final EVP Initial EVP Final EVP Type (95% CI) (95% CI) (95% CI) (95% CI) (95% CI) (95% CI) (95% CI) (95% CI) 0.8% 0.1% 0.5% 0.1% 0.1% 0.1% 1.4% 0.3% Cary-Blair 9/1,085 1/1,076 5/1,085 1/1,076 1/1,085 1/1,076 15/1,085 3/1,076 Preserved (0.4%, 1.6%) (0.0%, 0.5%) (0.2%, 1.1%) (0.0%, 0.5%) (0.0%, 0.5%) (0.0%, 0.5%) (0.8%, 2.3%) (0.1%, 0.8%) 1.8% 1.0% 2.2% 0.0% 0.3% 0.0% 4.3% 1.0% Unpreserved 18/997 10/982 22/997 0/982 3/997 0/982 43/997 10/982 (1.1%, 2.8%) (0.6%, 1.9%) (1.5%, 3.3%) (0.0%, 0.4%) (0.1%, 0.9%) (0.0%, 0.4%) (3.2%, 5.8%) (0.6%, 1.9%) 1.3% 0.5% 1.3% 0.0% 0.2% 0.0% 2.8% 0.6% Combined 27/2,082 11/2,058 27/2,082 1/2,058 4/2,082 1/2,058 58/2,082 13/2,058 (0.9%, 1.9%) (0.3%, 1.0%) (0.9%, 1.9%) (0.0%, 0.3%) (0.1%, 0.5%) (0.0%, 0.3%) (2.2%, 3.6%) (0.4%, 1.1%) 11
Analytical Inclusivity A variety of BD MAX Enteric Viral Panel-NR assay target strains were included in this study. Strain selection criteria included prevalence, serotype and geographic location, where appropriate. Twenty-seven (27) strains were tested, including strains from public collections and well-characterized clinical isolates. Inclusivity testing included 22 strains of Norovirus GI & GII and five (5) strains of Rotavirus. The strains were tested at ≥ 3 x LoD (Limit of Detection) of the corresponding strain in unpreserved stool matrix. The BD MAX Enteric Viral Panel-NR correctly identified all strains tested upon initial testing. Rotavirus strain WISC2 VR-2517 required testing above 3x LoD, and was resolved at 20x LoD. In silico analysis predicts that most strains of all genotypes will be detected, though some variant strains may be detected with reduced sensitivity or may not be detected due to inefficient amplification. For Norovirus in silico analysis, three (3) sequences showed more than one mismatch, two GI.3 variants and one GI.7 variant. Some Norovirus sequences showed more than two mismatches, one GII.3 variant, one GII.4 variant, one GII.6 variant and one GII.12 variant. These mutations could affect the detection of these variants. For Rotavirus A in silico analysis, there were five (5) variants that had more than three (3) mismatches. There were ten (10) Rotavirus A sequences that were truncated by four (4) nucleotides. These mutations could affect the detection of these variants. Noroviruses are genetically diverse. In silico analysis predicts that most strains, including NoV GI.3, GII.P16_GII.4, GII.P16_GII.2, and GII.Pe_GII.2, may be detected (refer to Table 8). Some variant strains may be detected with reduced sensitivity, or may not be detected due to inefficient amplification. Table 8: Analytical Inclusivity Strains Tested Virus Type Strains Tested 3 0a Norovirus GI 4 1 6 1 1 2 2 1 3 2 4 8 6 3 Norovirus GII 12 2 17 1 P16-GII.2 0a P16-GII.4 0a Pe_GII.2 0a Unknown 1 Rotavirus A 5 a Genotypes with unavailable strains were evaluated with in silico binding analysis. Analytical Sensitivity The analytical sensitivity (Limit of Detection or LoD) for the BD MAX Enteric Viral Panel-NR was determined as follows: Each target organism was prepared and quantified prior to inclusion in this study. Individual inoculating loops were dipped into each organism preparation and were then transferred to a Sample Buffer Tube already containing fecal matrix (preserved or unpreserved) that was pre-determined to be negative for all the targets detected by the BD MAX Enteric Viral Panel-NR. Each organism was tested with a minimum of 20 replicates per sample type (preserved or unpreserved), by 2 operators, using 3 different production lots of the BD MAX Enteric Viral Panel. The LoD for a specific organism was confirmed by testing at least 20 additional replicates at the determined LoD concentration. Analytical sensitivity (LoD), defined as the lowest concentration at which greater than or equal to 95% of all replicates are expected to test positive (refer to Table 9). Table 9: BD MAX Enteric Viral Panel-NR Limit of Detection for Individual Targets Unpreserved LoD Cary-Blair Preserved LoD Target Organism Strain (cp/mL in stool) (cp/mL in stool) GI 6.28E+06 4.71E+06 Norovirus GI 2.49E+05 2.49E+05 WA 6.46E+03 1.29E+04 Rotavirus Va70 1.16E+04 5.82E+03 Analytical Specificity (Cross-Reactivity and Exclusivity) The BD MAX Enteric Viral Panel-NR was performed on samples containing phylogenetically related species and other organisms (bacteria, viruses, parasites and yeast) likely to be found in stool specimens. The bacterial cells, yeasts, parasites and viruses were tested in the Sample Buffer Tube at ≥ 106 CFU, cells or genome equivalents/mL in stool, or ≥ 105 PFU/mL in stool or TCID50/mL in stool. Overall, 112 organisms were tested and no cross-reactivity was observed. 12
Interfering Substances Thirty-two (32) biological and chemical substances that may occasionally be present in stool specimens were evaluated for potential interference with the BD MAX Enteric Viral Panel-NR. Included in this study was an Antibiotics Mixture, which consisted of a combination of 7 different antibiotics or analgesics tested simultaneously. These antibiotics or analgesics included Naproxen sodium, Ceftriaxone disodium, Erythromycin, Metronidazole, Sulfamethoxazole, Tetracycline hydrochloride, and Trimethoprim. RotaTeq vaccine also yielded positive results as expected because the vaccine can be present in the stool up to 9 days post vaccination.12 Results demonstrated no reportable interference with any other substance tested (refer to Table 10). Table 10: Endogenous and Commercial Exogenous Substances Tested with the BD MAX Enteric Viral Panel-NR Brand Name or Description Result Brand Name or Description Result Fecal Fat NI Spermicial Lubricant NI Mucus NI Suppository (Glycerin) NI Whole Human Blood NI Vagisil NI Hydrocortisone Cream NI Laxatives NI Antiseptic Towelettes NI Anti-Diarrheal (liquid) NI Enema; Mineral Oil NI Anti-Diarrheal (pill) NI Hemorrhoidal Gel NI Antibiotics Mixture NI Nystatin Cream NI Antacids NI Topical Antibiotic NI Non-Steroidal Anti-Inflamatory (NSAID) NI NI: No reportable interference with the BD MAX Enteric Viral Panel-NR. In addition, microorganisms that may be endogenously present in stool specimens were evaluated for potential interference with the BD MAX Enteric Viral Panel-NR. Five (5) organisms were tested at high concentration (1 x106 cells/mL of stool). Results demonstrated no reportable interference with any microorganism tested (refer to Table 11). Table 11: Microorganisms Tested for Interference with the BD MAX Enteric Viral Panel-NR Microorganism Result Salmonella typhimurium NI Escherichia coli NI Proteus vulgaris NI Enterococcus faecalis NI Peptostreptococcus anaerobius NI NI: No reportable interference with the BD MAX Enteric Viral Panel-NR. Mixed Infection / Competitive Interference The mixed infection/competitive interference study was designed to evaluate the ability of the BD MAX Enteric Viral Panel-NR to detect low positive results in the presence of other targets at high concentrations. Organisms (Norovirus, and Rotavirus) for Master Mix D6 were prepared at the 95th percentile observed in the clinical trial to simulate a high clinical load to serve as high targets in the BD MAX Enteric Viral Panel Sample Buffer Tube. The BD MAX Enteric Viral Panel-NR analyte absent from the high targets mix was spiked into the Sample Buffer Tube at a concentration 2x their respective LoD representing a low load target along with 5 μL of unpreserved stool and tested to simulate mixed infections. In the presence of high loads, all organisms corresponding to their respective simulated mixed infection preparations were successfully detected by the BD MAX Enteric Viral Panel-NR. 13
Freeze/Thaw Study This study was designed to evaluate multiple freeze/thaw cycles at varied LoD levels (1.99x, 4x and 10x). Based on the study results, three (3) freeze/thaw cycles do not affect the performance of BD MAX Enteric Viral Panel-NR. The BD MAX Enteric Viral Panel-NR was able to detect 100% proportion positive for all enteric viral targets spiked in preserved and unpreserved, negative, clinical stool specimens before and after undergoing multiple freeze/thaw cycles. Table 12: Summary of Freeze/Thaw Study Results Target Positive Matrix Proportion Positive (%) and total number of samples tested Condition (across all LoD levels) Matrix Freeze/Thaw Cycles Norovirus GII Rotavirus Va70 100 100 0 (fresh/baseline) 60/60a 60/60a 100 100 1 60/60 60/60 Unpreserved 100 100 2 60/60 60/60 100 100 3 60/60 60/60 100 100 0 (fresh/baseline) 60/60 60/60 100 100 1 60/60a 60/60a Preserved 100 100 2 60/60a 60/60a 100 100 3 60/60a 60/60a a Proportion positive rates were calculated based on total sample number after removal of IND/UNR results, which were excluded from the analysis. Precision Within–laboratory precision was evaluated for the BD MAX Enteric Viral Panel-NR at one site. Testing was performed over 12 days, with two runs per day (one each by 2 operators), for a total of 24 runs. Five specific target organisms, at different concentrations, were used to create the panel members for this study. The panel members contained Norovirus and Rotavirus. The following values were used as spike levels for the target organisms contained in each panel member: • Moderate Positive (MP): 2.99x LoD • Low Positive (LP): 1.99x LoD • True Negative (TN): No target Each panel member was spiked with negative unpreserved stool matrix. True negative samples contained no target. Results are summarized by target and concentration in Table 13. Table 13: Precision Study Result Using One Lot of the BD MAX Enteric Viral Panel-NR Agreement with Expected Results Category Norovirus Rotavirus (95% CI) (95% CI) 100 99.5 TNa 192/192 191/192 (98.0, 100) (97.1, 99.9) 100 100 LP 48/48 48/48 (92.6, 100) (92.6, 100) 100 100 MP 48/48 48/48 (92.6, 100) (92.6, 100) aFor the True Negative (TN) category, the reported agreement indicates the percent of negative results. 14
Reproducibility The Site-to-Site reproducibility study was performed at three (3) clinical sites using one (1) reagent lot. Two (2) operators performed 2 runs per day, over five (5) distinct days (consecutive or not), for a total of 30 runs. The panels used were the same as described under the Precision heading, above. The site-to-site reproducibility percent agreements were 100% for the TN for all targets, and ranged from 97.8 to 100% and 96.7 to 100% for the LP and MP respectively. Results are summarized in Table 14. The quantitative reproducibility results across sites and by target are presented in Table 14. Ct.Score and the Cycle EP, internal criteria used to determine a final assay result, was selected as a means of assessing quantitative assay reproducibility. Mean Ct.Score and the mean Cycle EP values with variance components (SD and % CV) are shown in Table 15. Table 14. Site-to-site Reproducibility Results Using One Lot of the BD MAX Enteric Viral Panel-NR Agreement with Expected Results Category Norovirus Rotavirus (95% CI) (95% CI) 100 100 TNa 360/360 360/360 (98.9, 100) (98.9, 100) 100 97.8 LP 90/90 88/90 (95.9, 100) (92.3, 99.4) 100 100 MP 90/90 90/90 (95.9, 100) (95.9, 100) a For the True Negative (TN) category, the reported agreement indicates the percent of negative results. Table 15: Quantitative Site-to-site Reproducibility Results for BD MAX Enteric Viral Panel-NR Norovirus Rotavirus SPC PCR Metric Parameter LP MP LP MP TN N 90 90 88 90 90 Mean 29.8 29.6 32.3 31.3 26.8 Ct. Score SD 0.41 0.43 0.66 0.52 0.27 %CV 1.4 1.4 2.0 1.7 1.0 N 90 90 88 90 90 Mean 4,553.4 4,129.3 737.5 925.2 8,581.7 Cycle EP SD 1,269.47 1,769.10 359.91 382.36 1,161.23 %CV 27.9 42.8 48.8 41.3 13.5 Lot-to-lot reproducibility study was performed at one (1) site using three (3) reagent lots. Two (2) operators performed 2 runs per day, over five (5) distinct days (consecutive or not), for a total of 30 runs. The panels used were the same as described under the Precision heading, above. Results from 5 days of the accuracy and precision study were used to comprise data for one lot of reagents for the Lot-to-lot study. The overall Lot-to-lot reproducibility percent agreements were 99.7 to 100% for TN, and ranged from 97.8 to 100% and 98.9 to 100% and 100% for the LP and MP respectively. The quantitative results across lots and by target are presented in Tables 16. Ct.Score and the Cycle EP, an internal criteria used to determine a final assay result, was selected as a means of assessing quantitative assay reproducibility. Mean Ct.Score and the mean Cycle EP values with variance components (SD and % CV) are shown in Table 17. Table 16: Lot-to-lot Reproducibility Results for BD MAX Enteric Viral Panel-NR Agreement with Expected Results Category Norovirus Rotavirus (95% CI) (95% CI) 100 99.7 TNa 360/360 359/360 (98.9, 100) (98.4, 100) 100 100 LP 90/90 90/90 (95.9, 100) (95.9, 100) 100 100 MP 90/90 90/90 (95.9, 100) (95.9, 100) a For the True Negative (TN) category, the reported agreement indicates the percent of negative results. 15
Table 17: Quantitative Lot-to-lot Reproducibility Results for BD MAX Enteric Viral Panel-NR Norovirus Rotavirus SPC PCR Metric Parameter LP MP LP MP TN N 90 90 90 90 90 Mean 29.7 29.5 32.0 31.1 26.8 Ct. Score SD 0.41 0.35 0.46 0.35 0.39 %CV 1.4 1.2 1.5 1.1 1.5 N 90 90 90 90 90 Mean 4,945.6 4,948.5 1,117.1 1,345.6 8,993.5 Cycle EP SD 2,117.85 2,255.71 267.15 220.59 966.88 %CV 42.8 45.6 23.9 16.4 10.8 Carry-Over / Cross-Contamination A study was conducted to investigate within-run carryover and between-run carryover while processing samples with high viral load of analytes in the BD MAX Enteric Viral Panel-NR. A panel made of one high positive member containing one target organism and one negative member was used to prepare numerous samples. The negative member did not contain any target analyte. Twelve (12) replicates of the high positive panel member and 12 replicates of the negative panel member were tested in each run by alternating negative and positive samples. Two (2) operators performed 3 consecutive runs across 3 BD MAX instruments for a total of 9 runs containing 24 samples. Of the 108 negative samples tested in this study, two samples produced a positive result. REFERENCES 1. CDC: Estimates of Foodborne Illness in the United States, Located at: http://www.cdc.gov/foodborneburden/2011-foodborne- estimates.html 2. Kosek et al. Bulletin of the World Health Organization (2003) 81:197–204. 3. NIH: Bacterial Gastroenteritis, Located at: http://www.nlm.nih.gov/medlineplus/ency/article/000254.htm 4. Petri WA, Miller M, Binder HJ, Levine MM, Dillingham R, and Guerrant RL. Enteric infections, diarrhea, and their impact on function and development. J. Clin. Invest. (2008) 118:1277–1290 5. Summary of Notifiable Diseases. available at 6. CIFOR Analysis of State Legal Authorities. available at 7. Clinical and Laboratory Standards Institute. Protection of laboratory workers from occupationally acquired infections; Approved Guideline. Document M29 (Refer to the latest edition). 8. Centers for Disease Control and Prevention, and National Institutes of Health. Biosafety in microbiological and biomedical laboratories. Chosewood L.C. and Wislon D.E. (eds) (2009). HHS Publication No. (CDC) 21–1112. 9. BD MAX System User’s Manual (refer to the latest version) BD Life Sciences, Sparks, MD 21152 USA. 10. Clinical and Laboratory Standards Institute. Molecular Diagnostic Methods for Infectious Diseases; Approved Guideline, document MM3 (Refer to the latest edition). 11. Clinical and Laboratory Standards Institute. User Protocol for Evaluation of Qualitative Test performance; Approved Guideline, Document EP12 (Refer to the latest edition). 12. Catherine Yen, et al. Detection of fecal shedding of Rotavirus vaccine in infants following their first dose of pentavalent Rotavirus vaccine. Vaccine 2011 May 31:29(24) 4151–4155 This product is sold under license, and purchase of this product does not include rights to use for certain blood and tissue screening applications, nor for certain industrial applications. The purchase of this product allows the purchaser to use it for amplification and detection of nucleic acid sequences for providing human in vitro diagnostics. No general patent or other license of any kind other than this specific right of use from purchase is granted hereby. This product is subject to an agreement between Life Technologies Corporation and Becton, Dickinson and Company, and the manufacture, use, sale or import of this product may be subject to one or more of U.S. patents, pending applications and corresponding foreign equivalents, owned by Life Technologies Corp. The purchase of this product conveys to the buyer the nontransferable right to use the purchased amount of the product and components of the product, for use in assays for nucleic acid amplification or detection for the purpose of identifying microorganisms in human diagnostics. The buyer cannot use this product or its components for manufacturing or for therapeutic or prophylactic use, or sell or otherwise transfer this product or its components to any third party, or use for any use other than use in human diagnostics. For information on purchasing a license to this product for purposes other than use in human diagnostics, contact Life Technologies Corporation, Out-Licensing, 5791 Van Allen Way, Carlsbad, CA 92008, USA, email: outlicensing@lifetech.com. Technical Information: In the United States contact BD Technical Service and Support at 1.800.638.8663 or www.bd.com. 16
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