Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis
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Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis Journal: Journal of the American Society of Nephrology Manuscript ID JASN-2021-05-0611.R2 Manuscript Type: Research Letters Date Submitted by the 24-May-2021 Author: Complete List of Authors: Anand, Shuchi; Stanford University, Department of Medicine (Nephrology) Montez-Rath, Maria; Stanford University, Department of Medicine (Nephrology) Han, Jialin; Stanford University, Department of Medicine (Nephrology) Garcia, Pablo; Stanford University, Department of Medicine (Nephrology) Cadden, LinaCel; Ascend Clinical Laboratory Hunsader, Patti; Ascend Clinical Laboratory Kerschmann, Russell; Ascend Clinical Laboratory Beyer, Paul; Ascend Clinical Laboratory Dittrich, Mary ; US Renal Care Block, Geoffrey; US Renal Care Boyd, Scott; Stanford University, Department of Pathology Parsonnet, Julie; Stanford University, Departments of Medicine (Infectious Diseases and Geographic Medicine), and Epidemiology and Population Health Chertow, Glenn; Stanford University, Departments of Medicine (Nephrology), and Epidemiology and Population Health immunology, chronic dialysis, clinical nephrology, immunosuppression, Keywords: COVID-19, Antibody Formation, renal dialysis, Vaccination Journal of the American Society of Nephrology
Page 1 of 22 1 2 3 Authors: Anand, Shuchi; Montez-Rath, Maria; Han, Jialin; Garcia, Pablo; Cadden, LinaCel; Hunsader, 4 Patti; Kerschmann, Russell; Beyer, Paul; Dittrich, Mary ; Block, Geoffrey; Boyd, Scott; Parsonnet, Julie; 5 6 Chertow, Glenn 7 8 Title: Antibody Response to COVID-19 Vaccination in Patients Receiving Dialysis 9 10 Running title: Antibody Response to COVID-19 Vaccination 11 12 Manuscript Type: Research Letters 13 14 15 Funders: Ascend Clinical Laboratory, (Grant / Award Number: ) 16 National Institutes of Health, (Grant / Award Number: 'K24DK085446','R01DK127138') 17 18 Financial Disclosure: CUST_FINANCIAL_DISCLOSURE :No data available. LC, PH, RK and PB are employed 19 by Ascend Clinical Laboratories. GC is on the Board of Satellite Healthcare, a not for profit dialysis 20 organization. S. Anand reports Research Funding from Applied Pragmatic Research Grant, from Satellite 21 healthcare; Honoraria from American Kidney Fund; and Scientific Advisor or Membership with i3C (ISN) 22 23 & CENCAM. M. Montez-Rath reports Research Funding from Sanofi. G. Block reports current 24 employment with US Renal Care; Consultancy Agreements with Kirin, Akebia, Keryx, Reata; Ownership 25 Interest in Ardelyx, Reata; Research Funding from Akebia, Ardelyx, GSK; Honoraria from Kirin, Amgen; 26 Scientific Advisor or Membership with Reata, Kirin, Ardelyx, CJASN; and Other Interests/Relationships as 27 prior member on ESC of KDIGO, prior Medical Director at Davita, and prior employment with Reata. G. 28 Chertow reports Consultancy Agreements with Akebia, Amgen, Ardelyx, Astra Zeneca, Baxter, Cricket, 29 DiaMedica, Gilead, Miromatrix, Reata, Sanifit, Unicycive, Vertex; Ownership Interest in Ardelyx, 30 CloudCath, Durect, DxNow, Eliaz Therapeutics, Outset, Physiowave, PuraCath; Research Funding from 31 NIDDK, NIAID; Scientific Advisor or Membership as Co-Editor of Brenner & Rector's The Kidney (Elsevier); 32 33 an dOther Interests/Relationships via DSMB service, NIDDK, Angion, Bayer, and ReCor. S. Boyd reports 34 Consultancy Agreements with Regeneron, Sanofi, Novartis; Ownership Interest in AbCellera, CareDx; 35 Honoraria from NIH, Karolinska Institutet; Patents and Inventions from U.S. Patent No. 9,068,224, 36 licensed to Adaptive Biotechnologies; and Scientific Advisor or Membership with Food Allergy Fund. R. 37 Kerschmann reports Consultancy Agreements with Ascend Clinical, Grail, Inc., Notable Labs, and Octave 38 Bioscience. M. Dittrich is employed by US Renal Care; and has Ownership Interest in US Renal Care, 39 Signify Health, and Multiple dialysis units. 40 41 42 Study Group/Organization Name: CUST_STUDY_GROUP/ORGANIZATION_NAME :No data available. 43 44 Study Group Members’ Names: CUST_STUDY_GROUP_MEMBERS :No data available. 45 46 Total number of words: 886 47 48 Abstract: DOCUMENT_ABSTRACT :No data available. 49 50 51 52 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 2 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 Antibody Response to COVID-19 vaccination in Patients Receiving Dialysis 4 5 6 7 Authors: 8 9 Shuchi Anand, MD, Department of Medicine (Nephrology), Stanford University 10 Maria E. Montez-Rath, PhD, Department of Medicine (Nephrology), Stanford University 11 Jialin Han, MS, Department of Medicine (Nephrology), Stanford University 12 Pablo Garcia, MD, Department of Medicine (Nephrology), Stanford University 13 LinaCel Cadden, CLS, Ascend Clinical Laboratory 14 Patti Hunsader, CLS, Ascend Clinical Laboratory 15 Russell Kerschmann, MD, Ascend Clinical Laboratory 16 17 Paul Beyer, MBA, Ascend Clinical Laboratory 18 Mary Dittrich, MD, US Renal Care 19 Geoffrey A Block, MD, US Renal Care 20 Scott D Boyd, MD, PhD, Department of Pathology, Stanford University 21 Julie Parsonnet, MD, Departments of Medicine (Infectious Diseases and Geographic Medicine), and 22 Epidemiology and Population Health, Stanford University 23 Glenn M Chertow, MD, Departments of Medicine (Nephrology), and Epidemiology and Population 24 25 Health, Stanford University 26 27 Corresponding author: 28 Shuchi Anand, MD 29 777 Welch Road Suite DE 30 Palo Alto California, US 94304 31 sanand2@stanford.edu 32 ph: 650 725 2207 33 34 35 36 37 Running title: Antibody Response to COVID-19 Vaccination 38 39 Keywords: immunology, chronic dialysis, clinical nephrology, immunosuppression, COVID-19, antibody 40 formation, renal dialysis, vaccination 41 42 43 44 Word count: 961 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 3 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 Data from hepatitis B1 and influenza vaccination2 studies indicate blunted and foreshortened response to 4 5 immunization in patients receiving dialysis, raising the worrisome possibility that the SARS-CoV-2 6 7 vaccine may also yield lower efficacy in this population. We report early data on receptor binding domain 8 9 10 (RBD) seroconversion and semi-quantitative IgG values post vaccination in 1140 patients without, and 11 12 493 patients with, pre-vaccination SARS-CoV-2 RBD antibody. Among the subset who completed two 13 14 doses of vaccination, we assess rates of and risk factors for absent or attenuated response. 15 16 17 Our study was conducted in partnership with the dialysis network US Renal Care and Ascend Clinical 18 19 Laboratory. In the first two weeks of January 2021—prior to widespread vaccine roll out—we tested 20 21 SARS-CoV-2 antibody status of 21,570 patients receiving dialysis. From among the 17,390 seronegative 22 23 patients in January 2021, we used systematic sampling with fraction intervals stratified by age to 24 25 randomly select 4,346 persons to follow with monthly SARS-CoV-2 serology assays, in association with 26 27 type and date of vaccination(s) (see Supplemental Methods for assay characteristics and sample size 28 29 details). We also followed 540 patients seropositive as of January 2021, and any additional patients who 30 31 seroconverted prior to vaccination (see Supplemental Figure 1 for “seropositive prior to vaccination” 32 33 and “seronegative prior to vaccination” cohorts). We tested remainder samples using the Siemens’ total 34 35 36 RBD Ig assay, which measures IgG and IgM antibodies, in January 2021 and monthly thereafter in the 37 38 seronegative prior to vaccination cohort. Subsequent to a positive total RBD Ig result in the seronegative 39 40 and among all patients in the seropositive prior to vaccination cohorts, we tested samples only using a 41 42 semiquantitative Siemens RBD IgG assay monthly. 43 44 45 We evaluated response over three time periods: 14 days post the Johnson and Johnson vaccine or second dose of the 50 51 mRNA platform vaccines or (fully vaccinated). We classified responses as absent total RBD Ig antibody, 52 53 absent semiquantitative IgG antibody (index value
Page 4 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 As of April 2021, 1140 patients on dialysis without prior SARS-CoV-2 antibodies and 493 patients with 4 5 extant antibodies received a dose of vaccine (Supplemental Table 1). In the seronegative prior to 6 7 vaccination cohort, 9%, 35%, and 77% of patients had RBD IgG values ≥10 in the early post-vaccine, 8 9 10 partially vaccinated, and fully vaccinated groups, respectively. In the seropositive cohort, the proportions 11 12 were higher in the earlier periods (38%, 55%, and 81%, respectively). Median IgG levels were lower in 13 14 the seronegative compared with the seropositive cohorts (Figure 1). Among the seronegative prior to 15 16 vaccine cohort, median IgG index values post vaccination were 0.5 (25th, 75th percentile 0.5, 0.5), 3.2 (0.5, 17 18 27.8), and 41.6 (11.3, 150.0) in the early, partially and fully vaccinated periods respectively. Among the 19 20 seropositive prior to vaccine cohorts, median IgG index values post vaccination were 0.5 (0.5, 7.6), 1.1 21 22 (0.5, 102.3), 15.3 (1.2, 150), and 150 (23.2, 150) in the prior to, early, partially and fully vaccinated 23 24 periods respectively. 25 26 27 We assessed vaccine response among fully vaccinated patients a median of 29 (25th, 75th percentile 22, 28 29 39) days post vaccine completion. Of the 610 fully-vaccinated patients, 27 (prevalence 4.4% [95% CI 3. 30 31 1, 6.4%]), 21 (3.4% [2.4, 5.2%]), and 87 (14.3% [11.7, 17.3%]) had absent total RBD, absent 32 33 semiquantitive IgG, and attenuated IgG response, respectively. The prevalence of absent or attenuated 34 35 36 response was similar in seronegative and seropositive cohorts (Figure 1). Supplemental Tables 2 and 3 37 38 show results stratified by age and pre-vaccination seropositive status and sensitivity analysis assessing 39 40 responses at least 28 or more days post vaccine completion. 41 42 43 Non-white race and Hispanic ethnicity were associated with a lower risk of absent or attenuated response; 44 45 longer dialysis vintage and lower serum albumin were associated with a higher risk (Supplemental Table 46 47 4). Median RBD IgG levels were modestly lower for Pfizer than for the Moderna vaccine (Supplemental 48 49 Figure 2a & b), and correspondingly, there was a modestly higher prevalence of absent or attenuated 50 51 response in the subgroup receiving Pfizer compared with Moderna (Supplemental Table 5). Data on the 52 53 Johnson and Johnson vaccination were sparse (n=18), but suggested higher prevalence of absent response 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 5 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 among fully-vaccinated patients (83.3% [95% CI: 59.1, 94.5%] without detectable response on total RBD 4 5 or RBD IgG, and 5.6% [0.8, 30.7%] attenuated IgG). 6 7 8 Limitations of the study include the modest sample size. Our assessment was performed during the early 9 10 phase of vaccine roll out, a time period during which elderly or persons with comorbidities were 11 12 prioritized. Estimates for vaccine response may improve over time as a broader patient population 13 14 receives vaccination, although 40% of our cohort was < 65 years of age indicating reasonable 15 16 17 representativeness by age of patients receiving dialysis. Antibody titers are only one way to assess 18 19 immunologic response to vaccination. We do not yet know whether a measurable antibody response 20 21 correlates with protection from infection. 22 23 24 In summary, in a well-characterized cohort of patients receiving dialysis with and without prior evidence 25 26 of infection with SARS-COV-2, more than one in five demonstrated an attenuated immune response after 27 28 vaccination with one of three vaccines granted emergency use authorization by FDA. There were 29 30 differences in responses by vaccine type that require further study. Although median IgG titers are higher 31 32 among patients with evidence of prior SARS-CoV-2 infection compared with those without, rates of 33 34 absent- or attenuated response to vaccination were similar between the two groups. These data are in line 35 36 with some recently published reports4,5, and portend the critical need for studies evaluating real-world 37 38 efficacy of vaccination in the end-stage kidney disease population and other vulnerable populations with 39 40 chronic diseases, and for trials evaluating modified schedules of vaccination. 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 6 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 Disclosures: 4 5 LC, PH, RK and PB are employed by Ascend Clinical Laboratories. GC is on the Board of Satellite 6 Healthcare, a not for profit dialysis organization. S. Anand reports Research Funding from Applied 7 Pragmatic Research Grant, from Satellite healthcare; Honoraria from American Kidney Fund; and 8 Scientific Advisor or Membership with i3C (ISN) & CENCAM. M. Montez-Rath reports Research 9 10 Funding from Sanofi. G. Block reports current employment with US Renal Care; Consultancy 11 Agreements with Kirin, Akebia, Keryx, Reata; Ownership Interest in Ardelyx, Reata; Research Funding 12 from Akebia, Ardelyx, GSK; Honoraria from Kirin, Amgen; Scientific Advisor or Membership with 13 Reata, Kirin, Ardelyx, CJASN; and Other Interests/Relationships as prior member on ESC of KDIGO, 14 prior Medical Director at Davita, and prior employment with Reata. G. Chertow reports Consultancy 15 Agreements with Akebia, Amgen, Ardelyx, Astra Zeneca, Baxter, Cricket, DiaMedica, Gilead, 16 Miromatrix, Reata, Sanifit, Unicycive, Vertex; Ownership Interest in Ardelyx, CloudCath, Durect, 17 18 DxNow, Eliaz Therapeutics, Outset, Physiowave, PuraCath; Research Funding from NIDDK, NIAID; 19 Scientific Advisor or Membership as Co-Editor of Brenner & Rector's The Kidney (Elsevier); an dOther 20 Interests/Relationships via DSMB service, NIDDK, Angion, Bayer, and ReCor. S. Boyd reports 21 Consultancy Agreements with Regeneron, Sanofi, Novartis; Ownership Interest in AbCellera, CareDx; 22 Honoraria from NIH, Karolinska Institutet; Patents and Inventions from U.S. Patent No. 9,068,224, 23 licensed to Adaptive Biotechnologies; and Scientific Advisor or Membership with Food Allergy Fund. R. 24 Kerschmann reports Consultancy Agreements with Ascend Clinical, Grail, Inc., Notable Labs, and 25 26 Octave Bioscience. M. Dittrich is employed by US Renal Care; and has Ownership Interest in US Renal 27 Care, Signify Health, and Multiple dialysis units. 28 29 30 Funding Support: 31 32 Dr. Anand was supported by R01DK127138. Dr Chertow was supported by K24DK085446. Ascend 33 Clinical Laboratory supported the remainder plasma testing for SARS-CoV2 antibodies. 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 7 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 References 4 5 6 1. Edey M, Barraclough K, Johnson DW. Review article: Hepatitis B and dialysis. Nephrology 7 (Carlton). 2010;15(2):137-145. 8 2. Broeders NE, Hombrouck A, Lemy A, et al. Influenza A/H1N1 vaccine in patients treated by 9 kidney transplant or dialysis: a cohort study. Clin J Am Soc Nephrol. 2011;6(11):2573-2578. 10 11 3. Anand S, Montez-Rath ME, Han J, et al. Serial SARS-CoV-2 Receptor-Binding Domain Antibody 12 Responses in Patients Receiving Dialysis. Ann Intern Med. 2021. 13 4. Grupper A, Sharon N, Finn T, et al. Humoral Response to the Pfizer BNT162b2 Vaccine in Patients 14 Undergoing Maintenance Hemodialysis. Clin J Am Soc Nephrol. 2021. 15 5. Attias P, Sakhi H, Rieu P, et al. Antibody response to the BNT162b2 vaccine in maintenance 16 hemodialysis patients. Kidney Int. 2021. 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 8 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 Figure 1. IgG responses following COVID19 vaccination among patients receiving dialysis 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 In this figure, each marker represents an individual semiquantitative RBD IgG index value in the time 34 period related to vaccination. Blue circles represent persons who did not have evidence of SARS-CoV-2 35 infection prior to vaccination (seronegative); green markers represent persons who did have evidence of 36 SARS-CoV-2 infection prior to vaccination (seropositive). The overlying grey lines represent median 37 with interquartile range. We defined early post vaccination as within 14 days of first dose, partially 38 39 vaccinated as between 14 days after first dose to 14 days post second dose (applicable to mRNA vaccines 40 only), and fully vaccinated as more than 14 days post second dose for Moderna and Pfizer, or post dose 41 for Johnson and Johnson. The IgG index values assay range is from 0.5 to 150 but index values > 1 are 42 considered reactive. In the seropositive prior to vaccination cohort, the RBD IgG value closest to 43 vaccination is graphed; otherwise for both cohorts, the value most proximal to the start of each time 44 period is graphed. Although 1140 and 493 patients were included in the two cohorts (since they received 45 at least one vaccine dose at the time of the study), all patients do not have values available for each time 46 47 period, since these depend on the timing of the vaccination and the routine monthly blood draw. The 48 numbers above the figure show the numbers of persons with a result available in the seronegative and 49 seropositive cohorts for each time period. 50 51 The table below provides estimates for prevalence of no seroconversion on the total RBD Ig assay, and 52 absent (index value < 1) and attenuated (1< index value < 10) semiquantitative RBD IgG, respectively. 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
Page 9 of 22 Copyright 2021 by ASN, Published Ahead of Print on 6/11/21, Accepted/Unedited Version 1 2 3 Supplemental Table of Contents 4 5 6 7 Supplemental Methods 8 9 Supplemental Table 1 Participant characteristics according to SARS-CoV-2 spike protein receptor 10 binding domain antibody status prior to vaccination 11 12 Supplemental Table 2 Prevalence of absent or attenuated response among fully vaccinated individuals 13 overall and by age group, at least 14 days after completion of vaccine 14 15 Supplemental Table 3 Prevalence of absent or attenuated response among fully vaccinated individuals 16 overall and by age group, at least 28 days after completion of vaccine 17 Supplemental Table 4 Risk factors for absent or attenuated response to SARS-CoV-2 vaccination in 18 19 fully vaccinated patients receiving dialysis 20 Supplemental Table 5 Prevalence of absent or attenuated response among fully vaccinated individuals 21 22 by vaccine type, at least 14 days after completion of vaccine* 23 Supplemental Figure 1 Study flowchart of participants 24 25 Supplemental Figure 2a&b Semiquantitative IgG values in patients receiving Moderna (a) or Pfizer (b) 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 Journal of the American Society of Nephrology
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Page 11 of 22 1 2 3 Antibody Response to COVID-19 vaccination in Patients on Dialysis 4 5 6 7 8 9 Table of Contents 10 11 12 Supplemental Methods p2 13 14 Supplemental Table 1 Participant characteristics according to SARS-CoV-2 spike protein receptor 15 binding domain antibody status prior to vaccination p5 16 17 Supplemental Table 2 Prevalence of absent or attenuated response among fully vaccinated individuals 18 overall and by age group, at least 14 days after completion of vaccine p7 19 20 Supplemental Table 3 Prevalence of absent or attenuated response among fully vaccinated individuals 21 overall and by age group, at least 28 days after completion of vaccine p8 22 23 Supplemental Table 4 Risk factors for absent or attenuated response to SARS-CoV-2 vaccination in 24 fully vaccinated patients receiving dialysis p9 25 26 Supplemental Table 5 Prevalence of absent or attenuated response among fully vaccinated individuals 27 by vaccine type, at least 14 days after completion of vaccine* p10 28 29 Supplemental Figure 1 Study flowchart of participants p11 30 31 Supplemental Figure 2a&b Semiquantitative IgG values in patients receiving Moderna (a) or Pfizer (b) 32 p12 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 1 59 60 Journal of the American Society of Nephrology
Page 12 of 22 1 2 3 Supplemental Methods 4 5 Our study was conducted in partnership with the dialysis network US Renal Care and Ascend Clinical 6 7 Laboratory. Ascend Clinical tested remainder plasma of patients for SARS-CoV-2 antibody, and 8 9 anonymized all patient demographic, comorbidity, and laboratory data prior to transfer to Stanford 10 11 University. The Institutional Review Board at Stanford University reviewed and approved the study. 12 13 14 Sample size 15 16 17 We selected 4,348 patients on follow from the 17,390 patients on dialysis without prior evidence of 18 19 SARS-CoV-2 infection (as of January 2021) in US Renal Care network. To estimate sample size, we used 20 21 previously published data on hepatitis B vaccination non-response, as available by age strata from 22 23 Bruguera et al.1, who evaluated immune response in 270 patients. In this study, the rate of non-response 24 25 among persons age 20-40, 40-60, and >60 years was 7%, 13%, and 35% respectively. Correspondingly, 26 27 our estimates of non-response among persons age 18-44, 45-64, ≥65 years was 5%, 15%, and 30% 28 29 30 respectively. Estimating these proportions of non-response with an absolute precision of 2%, and 31 32 oversampling by 15%, resulted in a sample size estimate of 4222 (see Table). 33 34 Population and subpopulation sizes by age and number of patients required to obtain a prevalence estimate with the specified 35 absolute precision assuming and the specified proportion of non-response to the vaccine. 36 37 Proportion of US Renal Care Over sample Age group non-response to Absolute precision USRDS Population count Sample size required 38 vaccine Population size (15%) 39 18 to 44 5% 2% 60,540 2,871 453 521 40 41 45 to 64 15% 2% 207,022 10,605 1,218 1,401 42 43 ≥ 65 30% 2% 231,588 12,777 2,000 2,300 44 45 Total 499,150 26,253 3,671 4,222 46 47 48 We used systematic sampling with fractional intervals. In systematic sampling the patients are selected 49 50 from the list using a fixed selection interval, calculated by dividing the total number of patients in the list 51 52 by the desired number (i.e., 17390/4222 = 4.1). We thus randomly selected one number between 1 and 4 53 54 55 and then selected every 4th patient in the sampling frame sorted by zip code, age, sex and race. This 56 57 58 2 59 60 Journal of the American Society of Nephrology
Page 13 of 22 1 2 3 resulted in a sample size of 4348 patients on dialysis; however two sampled patients seroconverted prior 4 5 to vaccination, thus we followed 4346 patients from January 2021. This cohort comprised the 6 7 seronegative prior to vaccination cohort (see Supplemental Figure 1). 8 9 10 In addition, since August 2020, we have followed 6551 patients among whom a subset seroconverted 11 12 prior to vaccination (i.e., developed evidence of natural infection). All 540 patients seropositive as of 13 14 January 2021, and any additional patients who seroconverted prior to vaccination comprised the 15 16 17 “seropositive prior to vaccination cohort” (see Supplemental Figure 1). 18 19 Assay Characteristics: We tested remainder samples using the Siemens’ total RBD Ig assay, which 20 21 measures IgG and IgM antibodies, in January 2021 and monthly thereafter in the seronegative prior to 22 23 24 vaccination cohort. This assay is reported by the manufacture to have 100% sensitivity and 99.8% 25 26 specificity for tests performed ≥14 days after a positive reverse transcriptase polymerase chain reaction 27 28 test2; it has been validated independently with similar performance characteristics3,4. Subsequent to a 29 30 positive total RBD Ig result in the seronegative and among all patients in the seropositive prior to 31 32 vaccination cohorts, we tested samples only using a semiquantitative Siemens RBD IgG assay monthly. 33 34 The Siemens RBD IgG assay is semiquantitative two-step sandwich indirect chemiluminescent assay with 35 36 a manufacturer reported 95.6% (95% CI: 92.2-97.8%) sensitivity and 99.9% (95% CI 99.6-99.9%) 37 38 specificity for tests performed ≥21 days post positive reverse transcriptase polymerase chain reaction test. 39 40 An index value ≥1.0 is considered reactive and an index value of 150 is the upper limit of quantification. 41 42 43 We classified responses as absent total RBD Ig antibody, absent semiquantitative IgG antibody (index 44 45 value 1:80 7,8. Finally, in an 55 56 external study of patients with inflammatory bowel disease on biologic therapy post SARS-CoV-2 57 58 3 59 60 Journal of the American Society of Nephrology
Page 14 of 22 1 2 3 vaccination, 22 of 26 patients with inflammatory bowel disease and all 14 healthcare workers who had 4 5 completed vaccination exhibited semiquantitive titers with index values > 109. 6 7 8 Correlates: We extracted electronic health record data on age, sex, self-reported race and ethnicity, years 9 10 with end-stage kidney disease, diabetes status, and nursing home status as available. We also extracted 11 12 monthly laboratory results for serum albumin—a valid surrogate of health status10-13. We used the 13 14 laboratory value closest to the date prior to vaccination. 15 16 17 Statistical analysis: We present demographic data and laboratory values using proportions, mean ± 18 19 standard deviation (SD) or median, 25th-75th percentile, as applicable. We present the range of 20 21 semiquantitative IgG titers by vaccine period in the seronegative and seropositive prior to vaccination 22 23 24 cohorts. Among patients in the ‘fully vaccinated’ window, we present prevalence and 95% confidence 25 26 intervals, overall and by age group, of absent or attenuated antibody response in the overall, and 27 28 seronegative and seropositive prior to vaccination cohorts. Finally, we present these parameters by 29 30 vaccine type. In a sensitivity analysis, we assessed prevalence of absent or attenuated antibody response 31 32 after at least 28 days post completion of vaccination. Among participants who completed vaccination, we 33 34 used a Poisson model with robust standard error to assess risk factors for absent or attenuated antibody 35 36 response. Data missingness was low (5%), and exclusively due to missing self-reported race/ethnicity. We 37 38 therefore present results of a complete case analysis inclusive of both cohorts, in which we a priori 39 40 selected the following correlates to test: age, sex, race/ethnicity, diabetes status, vintage of ESKD, and 41 42 43 serum albumin. We considered statistical significance at
Page 15 of 22 1 2 3 Supplemental Table 1 Participant characteristics according to SARS-CoV-2 spike protein receptor 4 binding domain antibody status prior to vaccination 5 6 RBD Seronegative prior to RBD Seropositive prior to 7 vaccination vaccination 8 9 N=1140 N=493 10 Age (years) 11 12 18 to 44 67 (5.9) 41 (8.3) 13 45 to 64 369 (32.3) 175 (35.5) 14 65 to 79 491 (43.1) 198 (40.2) 15 ≥ 80 213 (18.7) 79 (16.0) 16 17 Gender 18 M 685 (60.1) 280 (56.8) 19 F 455 (39.9) 213 (43.2) 20 Race and Ethnicity 21 22 Hispanic 225 (19.7) 116 (23.5) 23 Non-Hispanic white 431 (37.8) 169 (34.3) 24 Non-Hispanic Black 245 (21.5) 111 (22.5) 25 26 Non-Hispanic Other 184 (16.2) 80 (16.2) 27 Missing 55 (4.8) 17 (3.5) 28 Region 29 Northeast 161 (14.1) 59 (12.0) 30 31 South 314 (27.6) 120 (24.3) 32 Midwest 194 (17.0) 85 (17.2) 33 West 471 (41.3) 229 (46.5) 34 ESKD Vintage (years) 35
Page 16 of 22 1 2 3 Moderna 716 (62.8) 341 (69.2) 4 Pfizer-BNT 390 (34.2) 131 (26.6) 5 6 Johnson & Johnson 34 (3.0) 21 (4.2) 7 8 RBD-receptor binding domain, ESKD-end-stage kidney disease 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 6 59 60 Journal of the American Society of Nephrology
Page 17 of 22 1 2 3 Supplemental Table 2 Prevalence of absent or attenuated response among fully vaccinated individuals overall and by age group, at least 14 days 4 after completion of vaccine* 5 6 Seronegative prior to vaccination cohort Seropositive prior to vaccination 7 8 N=519 N=91 9 10 No seroconversion on No detectable response on No detectable response on 11 Attenuated IgG Attenuated IgG total RBD Ig RBD IgG RBD IgG 12 13 Age (years) 14 18 to 44 9.1% (2.8, 30) 0% (0, 0) 4.5% (0.6, 26.2) 0% (0, 0) 0% (0, 0) 15 45 to 64 6.8% (3.5, 13.1) 0.9% (0.1, 5.8) 9.4% (5.3, 16.2) 5.6% (0.8, 31.2) 5.6% (0.8, 31.2) 16 17 65 to 79 5.5% (3.2, 9.3) 3.8% (2.0, 7.2) 16.5% (12.3, 21.8) 8.3% (3.1, 20.4) 12.5% (5.7, 25.4) 18 ≥ 80 2.8% (1.0, 7.2) 2.8% (1.0, 7.2) 18.1% (12.6, 25.2) 8.7% (2.1,29.3) 13.0% (4.2, 33.9) 19 Overall 5.2% (3.6. 7.5) 2.7% (1.6, 4.5) 14.8% (12.0, 18.2) 7.7% (3.7, 15.4) 11.9% (6.0, 19.2) 20 21 *Data are percentage (95% CI) obtained at least 14 days after two doses of either Moderna or Pfizer-BNT vaccines and 14 days after a single dose 22 of Johnson & Johnson vaccine. Median duration since completion of vaccination was 29 days [25th, 75th percentile: 22, 39 days]. We performed 23 total RBD Ig among all patients in the seronegative prior to vaccination cohort; once a patient seroconverted, we performed the semiquantitative 24 25 RBD IgG monthly. We performed semiquantitative RBG IgG only among patients known to have a positive total RBD Ig prior to vaccination 26 (seropositive prior to vaccination cohort). 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 7 44 45 Journal of the American Society of Nephrology 46 47
Page 18 of 22 1 2 3 4 5 Supplemental Table 3 Prevalence of absent or attenuated response among fully vaccinated individuals overall and by age group, at least 28 days 6 after completion of vaccine* 7 8 Seronegative prior to vaccination cohort Seropositive prior to vaccination 9 10 N=355 N=48 11 12 No seroconversion on No detectable response on No detectable response on Attenuated IgG Attenuated IgG 13 total RBD Ig RBD IgG RBD IgG 14 15 Age (years) 16 18 to 44 7.1% (1, 37.2) 0% (0, 0) 0% (0, 0) 0% (0, 0) 0% (0, 0) 17 45 to 64 1.4% (0.2, 9) 0% (0, 0) 14.9% (8.4, 24.9) 0% (0, 0) 10% (1.3, 48.1) 18 65 to 79 3.8% (1.7, 8.2) 3.1% (1.3, 7.4) 24.5% (18.4, 31.8) 13% (4.1, 34.3) 17.4% (6.5, 38.9) 19 20 ≥ 80 1.9% (0.5, 7.1) 4.6% (1.9, 10.7) 25.0% (17.7, 34.0) 0% (0, 0) 14.3% (3.5, 43.7) 21 Overall 2.5% (1.3, 4.6) 3.2% (1.9, 5.5) 20.8% (17.1, 25.1) 6.3% (2.0, 18.1) 14.6% (7.0, 28.0) 22 23 *Data are percentage (95% CI) obtained at least 28 days after two full doses of either Moderna or Pfizer-BNT vaccines and 28 days after a single 24 dose of Johnson & Johnson vaccine. We performed total RBD Ig among all patients in the seronegative prior to vaccination cohort; once a patient 25 seroconverted, we performed the semiquantitative RBD IgG monthly. We performed semiquantitative RBG IgG only among patients known to 26 have a positive total RBD Ig prior to vaccination (seropositive prior to vaccination cohort). Among both cohorts the prevalence of no 27 seroconversion on total RBD Ig, no detectable response on RBD IgG and attenuated IgG was 2.8% (1.5, 5.2), 2.8% (1.5, 5.2) and 72.7 (67.8, 77.1) 28 29 respectively. 30 31 32 33 34 35 36 37 38 39 40 41 42 43 8 44 45 Journal of the American Society of Nephrology 46 47
Page 19 of 22 1 2 3 Supplemental Table 4 Risk factors for absent or attenuated response to SARS-CoV-2 vaccination in fully vaccinated patients receiving dialysis 4 5 Risk Ratio^ 6 Age (years) 7 8
Page 20 of 22 Supplemental Table 5 Prevalence of absent or attenuated response among fully vaccinated individuals by vaccine type, 1 at least 14 days after completion of vaccine* 2 3 Fully vaccinated 4 5 N=610 6 7 No detectable 8 response on total RBD Attenuated IgG 9 or RBD IgG 10 11 Moderna 353 2.8% (1.5, 5.2) 9.1% (6.5, 12.5) 12 Pfizer-BNT 239 9.6% (6.5, 14.1) 22.6% (17.7, 28.3) 13 Johnson & Johnson 18 83.3% (59.1, 94.5) 5.6% (0.8, 30.7) 14 15 16 17 *Data are percentage (95% CI) obtained at least 14 days after two full doses of either Moderna or Pfizer-BNT vaccines 18 and 14 days after a single dose of Johnson & Johnson vaccine. We performed total RBD Ig among all patients in the 19 seronegative prior to vaccination cohort; once a patient seroconverted, we performed the semiquantitative RBD IgG 20 monthly. We performed semiquantitative RBG IgG only among patients known to have a positive total RBD Ig prior to 21 22 vaccination (seropositive prior to vaccination cohort). 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 10 59 60 Journal of the American Society of Nephrology
Page 21 of 22 Supplemental Figure 1 Study flowchart of participants 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 *Seroconversion between August to January 49 ^Semiquantitative IgG titer 14 days post second dose 50 51 52 53 54 55 56 57 58 11 59 60 Journal of the American Society of Nephrology
Page 22 of 22 1 2 Supplemental Figure 2a&b: Semiquantitative IgG values in patients receiving Moderna (a) or Pfizer-BNT (b) 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 12 44 45 Journal of the American Society of Nephrology 46 47
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