Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022

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Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
Update on COVID-19 Projections
  Science Advisory and Modelling Consensus Tables
                  March 17, 2022
Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
Key findings
• COVID-19 case numbers, hospital and ICU occupancy have stopped
  declining; there is considerable regional variation.
• Given the relaxation of public health measures and consequent increase in
  transmission, hospital and ICU occupancy will likely increase over the next
  few weeks, but less than in January 2022 and for a limited period of time if
  changes in behaviour are only moderate.
• The extent of this increase, and of a person’s risk of contracting COVID-19,
  will depend on the number of close contacts (especially indoors without
  masking), vaccination status, and the spread of the more transmissible
  BA.2 subvariant.
• Older adults, immunocompromised, unvaccinated and marginalized
  individuals and groups are still susceptible to severe illness from COVID-19.
• A complete vaccine series (currently two doses in children, three doses in
  adults, four in long-term care residents and other eligible high-risk groups)
  is the best defence against getting and spreading COVID-19.                     2
Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
Ontario’s COVID-19 wastewater signal stopped declining
and is now increasing slightly
• Based on 101 wastewater treatment                                                                                              Province-Wide COVID-19 Wastewater Signal
  plants, pumping stations and                                                                                       2.0
                                                                                                                           Incomplete Data, Provisional Estimates*

                                                              Standardized Concentration of SARS-CoV-2 Gene Copies
  sewersheds in all 34 public health                                                                                       Complete Data
  units
• Plausible range of SARS-CoV-2                                                                                      1.5

  infections since Dec 1, 2021, based on
  wastewater: 3 to 4.5 million
• Current daily number of infections                                                                                 1.0

  estimated based on daily case growth
  from wastewater curve: 15,000 to
  20,000                                                                                                             0.5

• Until mid Dec 2021, an estimated 30
  to 45% of infections were reported;
  after change of testing strategy end of                                                                            0.0

  Dec 2021, an estimated 10% of

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  infections are reported

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                                                                                                                                                         Sampling Date

                                                                    Data: Wastewater Dashboard hosted by Ontario’s Ministry of the Environment, Conservation and Parks (MECP)      3
                        Analysis: Secretariat of the Science Advisory Table (https://covid19-sciencetable.ca/ontario-dashboard/) – see dashboard for explanations of the methods
Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
The wastewater signal shows considerable variation across
regions

                                                           Data: Wastewater Dashboard hosted by Ontario’s Ministry of the Environment, Conservation and Parks (MECP)      4
               Analysis: Secretariat of the Science Advisory Table (https://covid19-sciencetable.ca/ontario-dashboard/) – see dashboard for explanations of the methods
Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
Provincial test positivity has stopped declining
                Nov. 28         Dec. 19         Dec. 31      Jan. 5                                Feb. 17
             First Ontario     New public     Changes to     Additional public                  Public health
            Omicron case             health   PCR testing    health measures             measures lifted for
                 reported      restrictions       criteria   and shift to online        all but large venues
                             implemented                     school

                                                                                                                                             5
                                                                                   Data source: Public Health Ontario. PDNOC lab reporting
Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
Test positivity in selected populations is stable or increasing
                                                                     slightly
                                                Workplace screening                                                                            People requiring frequent testing                                                                                    Hospital Admission Screening
                                                Workplace rapid screening program across                                                       Individuals with 40+ tests since pandemic start,                                                                     Selected Ontario hospitals, 4 for adult
                                                Canada, twice per week, Ontario data shown                                                     20-79 years of age, excluding LTC residents                                                                          admissions, 5 for pediatric admissions
                                                        3.0%                                                                                                                                                                                                                30%
Fraction of presumptive positive on total screens (%)

                                                                                                                                                              14%

                                                        2.5%                                                                                                                                                                                                                25%
                                                                                                                                                              12%

                                                                                                                                                                                                                                                     Percent Positive (%)
                                                        2.0%                                                                                                  10%                                                                                                           20%

                                                                                                                                       Percent Positive (%)
                                                                                                                                                              8%
                                                        1.5%                                                                                                                                                                                                                15%

                                                                                                                                                              6%
                                                        1.0%                                                                                                                                                                                                                10%
                                                                                                                                                              4%

                                                        0.5%                                                                                                                                                                                                                5%
                                                                                                                                                              2%

                                                        0.0%                                                                                                  0%                                                                                                            0%
                                                               15 Dec 21

                                                                           30 Dec 21

                                                                                       14 Jan 22

                                                                                                   29 Jan 22

                                                                                                                                                                    15 Dec 21

                                                                                                                                                                                       30 Dec 21

                                                                                                                                                                                                                                                                                  1 Jan 22
                                                                                                                                                                                                   14 Jan 22

                                                                                                                                                                                                               29 Jan 22

                                                                                                                                                                                                                                                                                                  16 Jan 22

                                                                                                                                                                                                                                                                                                                    31 Jan 22
                                                                                                               13 Feb 22

                                                                                                                           28 Feb 22

                                                                                                                                                                                                                                                                                                                                                   2 Mar 22
                                                                                                                                                                                                                            13 Feb 22

                                                                                                                                                                                                                                         28 Feb 22

                                                                                                                                                                                                                                                                                                                                 15 Feb 22
                                                                                                                                                                                20-39 years           40-59 years          60-79 years                                            All Adult Adm               Labour&Deliver y Adm           All Pediatr ic Adm

                                                                                                                                                                                                                                                                                                                                                              6
                                                                               Data/Analysis: Creative Destruction Lab-Rapid Screening Consortium (Workplace screening). MCT using OLIS data (repeat testers), Hospital IPAC Teams and Data Analytics (hospital admission screening)
Update on COVID-19 Projections - Science Advisory and Modelling Consensus Tables March 17, 2022
Lower income neighbourhoods continue to be hit hardest by
the pandemic, also during the fifth wave caused by Omicron
                                                                   Cumulative COVID-19 Deaths per 100,000 Population per Wave
                                                     30
 Cumulative COVID-19 Deaths per 100,000 Population

                                                     25

                                                     20

                                                     15

                                                     10

                                                      5

                                                      0
                                                          Wave 1                  Wave 2                      Wave 3                        Wave 4     Wave 5
                                                                           Quintile 1   Quintile 2   Quintile 3   Quintile 4   Quintile 5
                                                  Lowest Income                                                 Highest Income
         Ontario’s population was divided into 5 equally sized groups (quintiles) according to household income measured at neighbourhood level. Analysis excludes residents
         of long-term care homes. Wave 1: Feb 26 – Aug 31, 2020; Wave 2: Sep 1, 2020 - Feb 28, 2021; Wave 3: Mar 1 – Jul 31, 2021; Wave 4: Aug 1 – Dec 14, 2021; Wave 5:
         Dec 15, 2021 – present.                                                                                                                                                                  7
                                                                                                                                                        Analysis: COVID-19 Heterogeneity Research Group
Mobility, which is correlated with contacts, continues to increase,
but retail & recreation are still below summer 2021 levels

                                           Data: https://covid19.apple.com/mobility/ and https://www.google.com/covid19/mobility/        8
                              Analysis: Secretariat of the Science Advisory Table (https://covid19-sciencetable.ca/ontario-dashboard/)
We expect hospital occupancy to increase when public
       health measures are lifted and behaviours change
Figure shows projections based on models from                                                                                                            Example scenarios
two scientific teams.                                                                                                                                            Moderate increase in transmission*
• Different models use different approaches                                                                                                                      No increase in transmission
    and assumptions.                                                                3000
• Models are calibrated to different data

                                                   Hospital occupancy (ward only)
    including case counts, hospital occupancy,
    and ICU occupancy.
• Models assume 7M to 8M Ontarians will have
    received booster dose by end of March.                                          2000
• Scenarios differ by levels of immunity and
    changes in contacts and behaviour.
• COVID-19 transmission, which drives hospital
    occupancy, can be reduced by wearing high-
    quality masks, full vaccination and not                                         1000

    increasing contacts.
                                                                                                                                                                               Range of
• There remains uncertainty on current                                                                                                                                    scenarios considered
    community levels of immunity, future changes
    in behaviour, and future spread of the more
    transmissible BA.2 subvariant.                                                     0
                                                                                      Jan 2022   Feb 2022                 Mar 2022                    Apr 2022                   May 2022
                                                               *Examples of scenarios that could result in a moderate increase in transmission include an approximate increase in contacts of 40%, with half of
                                                               contacts maskless, or an approximate 30% increase in contacts if BA.2 becomes dominant, with half of contacts maskless.

                                                                                                                                         Projections informed by modelling from McMasterU, WesternU               9
                                                                                                                                                            Data (hospitalisations): covid-19.ontario.ca
We expect ICU occupancy to increase when public health
       measures are lifted and behaviours change
Figure shows projections based on model from                                                                                                     Example scenarios
two scientific teams.                                              600
                                                                                                                                                        Moderate increase in transmission*
• Models are calibrated to different data
                                                                                                                                                        No increase in transmission
    including case counts, hospital occupancy,
    and ICU occupancy.
• Models assume 7M to 8M Ontarians will have
    received booster dose by end of March.
• Range of scenarios shown correspond to

                                                   ICU occupancy
                                                                   400
    scenarios in previous slide on hospital
    occupancy.
• COVID-19 transmission, which drives ICU
    occupancy, can be reduced by wearing high-
    quality masks, full vaccination and not
    increasing contacts.                                                                                                                                                 Range of
• There remains uncertainty on current                             200
                                                                                                                                                                    scenarios considered
    community levels of immunity, future changes
    in behaviour, and future spread of the more
    transmissible BA.2 subvariant.
                                                                    Jan 2022           Feb 2022                 Mar 2022                     Apr 2022                   May 2022

                                                      *Examples of scenarios that could result in a moderate increase in transmission include an approximate increase in contacts of 40%, with half of
                                                      contacts maskless, or an approximate 30% increase in contacts if BA.2 becomes dominant, with half of contacts maskless.
                                                                                                                                Projections informed by modelling from McMasterU, WesternU               10
                                                                                                                                                   Data (hospitalisations): covid-19.ontario.ca
Vaccine coverage with 3rd doses has plateaued in all age groups
                                                           and is lower in marginalized communities

                                                              Number of Vaccinated Individuals & Doses Administered                                                                                                                     Percentage Vaccinated with 3 Doses by Age and Material Deprivation
                                                                                                                      250,000
                                                                                                                                                                                                                                  100

                                                                                                                                Daily Number of Vaccine Doses Administered (7-Day Average)
                                              12,000,000    1 Dose                                                                                                                                                                 90
Cumulative Number of Vaccinated Individuals

                                                            2 Doses
                                                                                                                                                                                                                                   80

                                                                                                                                                                                             Percentage of People witih 3 Doses
                                                                                                                      200,000
                                              10,000,000    3 Doses
                                                            Doses per Day                                                                                                                                                          70

                                               8,000,000
                                                                                                                      150,000                                                                                                      60

                                                                                                                                                                                                                                   50
                                               6,000,000
                                                                                                                      100,000                                                                                                      40

                                               4,000,000                                                                                                                                                                           30

                                                                                                                      50,000                                                                                                       20
                                               2,000,000
                                                                                                                                                                                                                                   10

                                                      0                                                               0                                                                                                             0
                                                                                                                                                                                                                                         12 to 17 years        18 to 29 years            30 to 59 years         60 to 79 years          80+ years
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                                                                                                                                                                                                                                                              Quintile 1    Quintile 2      Quintile 3    Quintile 4   Quintile 5
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                                                                                        Date                                                                                                                                                Highest Material Deprivation                                               Lowest Material Deprivation

                                                                                                                                                                                                                              Ontario’s population was divided into 5 equally sized groups (quintiles) according to material deprivation measured at
                                                                                                                                                                                                                              neighbourhood level. Analysis excludes residents of long-term care homes.

                                                                                                                                                                                                                                                                            Data: https://data.ontario.ca and Public Health Ontario                    11
                                                                                                                                                                                                                          Analysis: Secretariat of the Science Advisory Table (https://covid19-sciencetable.ca/ontario-dashboard/)
Modelling suggests that 3rd doses substantially reduced COVID-19
hospitalization and ICU occupancy
                                 COVID-19 hospital occupancy                                                                       COVID-19 ICU occupancy
                                 6000
                                                                                                                                                    1000

                                 5000
                                                                                   34%                                                               800                                              30%
Hospital Occupancy (ward only)

                                                                                   fewer                                                                                                              fewer
                                 4000                                              people                                                                                                             people
                                                                                   at peak                                                                                                            at peak

                                                                                                                                    ICU Occupancy
                                                                                                                                                     600
                                 3000

                                                                                                                                                     400
                                 2000

                                                                                                                                                     200
                                 1000

                                    0                                                                                                                  0

                                                                                                                                                           15 Dec 21

                                                                                                                                                                           30 Dec 21

                                                                                                                                                                                          14 Jan 22

                                                                                                                                                                                                        29 Jan 22

                                                                                                                                                                                                                       13 Feb 22

                                                                                                                                                                                                                                       28 Feb 22
                                        15 Dec 21

                                                         30 Dec 21

                                                                       14 Jan 22

                                                                                         29 Jan 22

                                                                                                       13 Feb 22

                                                                                                                       28 Feb 22

                                                    Observed 7-day Average            If no
                                                                                      No    3rd doses had been given
                                                                                          Boosters                                                                     Observed 7-day Average         If no
                                                                                                                                                                                                      No    3rd doses had been given
                                                                                                                                                                                                         Boosters

  The orange and yellow curves show the estimated hospital occupancy (wards only) and ICU occupancy in Ontario that would have occurred if no 3rd doses had been given. The grey curves show the 7-
  day average of hospital and ICU occupancy observed in Ontario during the Omicron wave.
                                                                                                                                                                                                                                                   12
A 3rd COVID-19 vaccine dose offers better protection against
Omicron infection over time than 2 doses
                                                3.00
                                                                             2 Doses                                                                    3 Doses
     Mean of protective antibody levels (log10 ID50 )

                                                2.50

                                                2.00

                                                1.50

                                                1.00

                                                0.50

                                                0.00
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                                                                                                 Shown are mean log 10 neutralizing antibody titers against Omicron over time after Moderna COVID-19 mRNA vaccine   13
                                                                                                             Adapted from: Pajon et al, N Engl J Med 2022 (https://www.nejm.org/doi/full/10.1056/NEJMc2119912)
Future scenarios in Ontario will depend on population immunity,
 the virulence and severity of future variants

The severity of COVID-19                                    High
experienced in a population (risk of

                                       Immunity in the Population
serious outcomes: hospitalization,
ICU admission and death) will
depend on:
1. The immunity of the
    population resulting from
    vaccination and previous
    infection
2. The virulence of the variant
    (the likelihood that the variant
    will cause serious outcomes)
                                                                Low
                                                                      Low                                                                          High
                                                                            Risk of Serious Outcomes Caused by a Future Variant

                                                                                                                                                          14
                                                                                                            Adapted from: https://www.covidroadmap.org/
Masks are still an effective public health measure to reduce
COVID-19 transmission
• Public health measures, including increased ventilation and filtration, physical
  distancing and wearing a well-fitted, high-quality mask can help reduce SARS-
  CoV-2 transmission in places where people gather indoors.
• Recent studies from the United States analysed the impact of mask-wearing on
  SARS-CoV-2 community transmission: mandatory masking reduced the
  incidence of SARS-CoV-2 infection consistently.
• Masking protects both the person who wears the mask and others.
• Community benefits from masking
  are most pronounced when
  adopted widely.

                                                              Example of a matched case-control
                                                              study in 1,828 people from the United
                                                              States, Feb 10-Dec 1, 2021
                                                                                                                                                                  15
                   Donovan et al. MMWR Morb Mortal Wkly Rep 2022; Brooks et al. JAMA. 2021; Figure adapted from Andrejko et al. MMWR Morb Mortal Wkly Rep 2022.
Ontario built strong pandemic control tools, which can be
used to maintain readiness
Ontarians should:
• Ensure that they have a complete vaccine series (includes three doses in adults, four in eligible,
  high-risk groups).
• Use high-quality masks whenever necessary to protect vulnerable people or themselves.
• Stay home when sick or symptomatic.
Ontario should:
• Continue improvement of ventilation and air filtration in public indoor spaces.
• Create rapid paths to testing and treatment (e.g., Paxlovid, antibodies) with a focus on equity.
• Be prepared to renew mass COVID-19 vaccination campaigns if needed.
• Be prepared to renew vaccine certificates requiring a recent booster dose for high-risk settings if
  needed.
• Be prepared to reintroduce mask mandates if needed.
• Maintain protective measures that are appropriate for the general health and wellbeing of those
  living and working in congregate care settings such as long-term care.
                                                                                                        16
Ontario remains vulnerable as long as the global pandemic
continues
• New variants are more likely to develop if a large number of people who are
  immune-compromised do not receive appropriate treatment and vaccination
   • 2-3% of global population is immunosuppressed
   • Many of the more than 40 million people living with HIV/AIDS are not appropriately treated
• Although 56% of the world population has now received two COVID-19 vaccine
  doses, that is still too few to build sufficient immunity globally.
   • Broad-acting and intranasal vaccines now under development could play a key role in the
     future.
• Global surveillance and public health controls remain insufficient.
   • Global wastewater surveillance and genomic sequencing will continue to be essential in
     the future.
   • Improved ventilation, air filtration and adoption of high-quality masks will continue to be
     important worldwide.                                                                          17
Key findings
• COVID-19 case numbers, hospital and ICU occupancy have stopped
  declining; there is considerable regional variation.
• Given the relaxation of public health measures and consequent increase in
  transmission, hospital and ICU occupancy will likely increase over the next
  few weeks, but less than in January 2022 and for a limited period of time if
  changes in behaviour are only moderate.
• The extent of this increase, and of a person’s risk of contracting COVID-19,
  will depend on the number of close contacts (especially indoors without
  masking), vaccination status, and the spread of the more transmissible
  BA.2 subvariant.
• Older adults, immunocompromised, unvaccinated and marginalized
  individuals and groups are still susceptible to severe illness from COVID-19.
• A complete vaccine series (currently two doses in children, three doses in
  adults, four in long-term care residents and other eligible high-risk groups)
  is the best defence against getting and spreading COVID-19.                     18
Contributors
• Creative Destruction Lab-Rapid Screening Consortium
• Hospital Infection Prevention And Control (IPAC) Teams and Data Analytics: Suhair AlShanteer, Michelle Barton Forbes, Steven
  Bernard, Craig Campbell, Michael Chow, Robert Crawford, Gerald Evans, Jayvee Guerrero, Kevin Katz, Erin Kelleher, Sarah Khan,
  Ethel Lagman, Melanie Lavigne, Kirk Leifso, Sheri Levesque, Reena Lovinsky, Tracy Macleod, Jennifer McCallum, Dominik Mertz,
  Vydia Nankoosingh, Kasey Parker, Paul Sandor, Michelle Science, Shawna Silver, Celia So, Rachel Solomon, Nisha Thampi, Alon
  Vaisman, Elisa Vicencio, Eugene Wong
• ICES: Sarah Buchan, Hannah Chung, Kevin Brown, Peter Austin, Deshayne Fell, Jonathan Gubbay, Sharifa Nasreen, Kevin Schwartz,
  Maria Sundaram, Mina Tadrous, Kumanan Wilson, Sarah Wilson, Jeff Kwong
• McMasterU: Irena Papst, Ben Bolker, Jonathan Dushoff, David Earn
• Modelling Consensus Table: Kali Barrett, Isha Berry, Sharmistha Mishra, Ashleigh Tuite, Beate Sander
• Ontario Health: Erik Hellsten, Stephen Petersen, Anna Lambrinos
• Science Advisory Table: Peter Jüni, Nicolas Bodmer, Karen Born, Shujun Yan, Pavlos Bobos
• TAHSN Human Resources Network: Sunnybrook Health Sciences Centre, North York General Hospital, Trillium Health
  Partners, Women’s College Hospital, Hospital for Sick Children, Unity Health Network, Humber River Regional Hospital,
  Scarborough Health Network
• Western University/London Health Sciences Centre: Lauren Cipriano, Wael Haddara
• St. Michael’s Hospital/University of Toronto: Bruno R. da Costa
• COVID-19 Heterogeneity Research Group: Huiting Ma, Adrienne Chan, Stefan Baral, Beate Sander, Sharmistha Mishra

                                                                                                                                  19
Content and review by Modelling Consensus and Scientific
Advisory Table members and secretariat
Beate Sander,* Peter Jüni, Brian Schwartz,* Upton Allen, Vanessa Allen, Kali Barrett, Isha Berry,
Pavlos Bobos, Nicolas Bodmer, Isaac Bogoch, Karen Born, Kevin Brown, Sarah Buchan, Swetaprovo
Chaudhuri, Yoojin Choi, Lauren Cipriano, Troy Day, David Earn,* Gerald Evans, Jennifer Gibson, Anne
Hayes,* Michael Hillmer, Jessica Hopkins, Jeff Kwong, Fiona Kouyoumdjian, Audrey Laporte, John
Lavis, Gerald Lebovic, Stephanie Lockert, Linda Mah, Kamil Malikov, Doug Manuel, Roisin McElroy,
Allison McGeer, Michelle Murti, John McLaughlin, Sharmistha Mishra, Andrew Morris, Samira
Mubareka, Christopher Mushquash, Ayodele Odutayo, Menaka Pai, Alyssa Parpia, Samir Patel, Anna
Perkhun, Justin Presseau, Fahad Razak, Rob Reid, Paula Rochon, Laura Rosella, Michael Schull,
Arjumand Siddiqi, Chris Simpson, Arthur Slutsky, Janet Smylie, Robert Steiner, Ashleigh Tuite, Tania
Watts, Ashini Weerasinghe, Scott Weese, Xiaolin Wei, Jianhong Wu, Diana Yan, Emre Yurga

*Chairs of Scientific Advisory, Evidence Synthesis, and Modelling Consensus Tables
For table membership and profiles, please visit the About and Partners pages on the Science
Advisory Table website.

                                                                                                       20
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