Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
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National daily case counts and severity indictors are back on the rise Number of cases/ Number of Total hospitalizations deaths On average over the past 7 days: 9,000 4,057 cases 900 8,000 2,194 hospitalizations 800 29 deaths 7,000 700 6,000 600 5,000 500 4,000 400 3,000 300 2,000 200 1,000 100 0 0 01Mar 01Apr 01May 01Jun 01Jul 01Aug 01Sep 01Oct 01Nov 01Dec 01Jan 01Feb 01Mar Cases Hospitalizations Deaths Data as of March 23, 2021 Note: 7-day moving averages. Total hospitalizations include all people in hospital on that day, and the average length of stay in hospital is 1 approximately two weeks.
Each new case in Canada is spreading infection to more than one person, bringing the epidemic back into a growth pattern 2 Since early March, 1.5 When Rt is consistently >1, Canada’s Rt has been >1 the epidemic is growing 1 When Rt is consistently
COVID-19 incidence is increasing in provinces west of the Atlantic region AB SK 40 BC 40 40 30 30 30 20 20 20 10 10 10 0 0 0 Number of 01Apr 01Jul 01Oct 01Jan 01Apr 01Jul 01Oct 01Jan 01Apr 01Jul 01Oct 01Jan cases per 100,000 MB ON QC population 40 40 40 30 30 30 20 20 20 10 10 10 0 0 0 01Apr 01Jul 01Oct 01Jan 01Apr 01Jul 01Oct 01Jan 01Apr 01Jul 01Oct 01Jan Date of case report Data as of March 23, 2021 3
COVID-19 hospitalization rates levelling off or increasing in provinces with elevated disease activity Number of cases in hospital per 100,000 population 30 25 20 15 10 5 0 01 Apr 01 May 01 Jun 01 Jul 01 Aug 01 Sep 01 Oct 01 Nov 01 Dec 01 Jan 01 Feb 01 Mar AB BC MB ON QC SK Data as of March 22, 2021 Note: 7-day moving average 4
Highest incidence of COVID-19 occurring in Northern health regions of British Columbia, Saskatchewan, Manitoba, and parts of Ontario Cases per 100,000 population (Mar 7 – Mar 22, 2021) 400 + 37 of 99 health regions 201 - 400 with > 100 cases per 101 - 200 100,000 population 51 - 100 over a 14-day period 26 - 50 1 - 25 0 Data sources: COVID-19 Canada Open Data Working Group. Epidemiological data from the COVID-19 Outbreak in Canada Data as of March 22, 2021 Note: Map only shows COVID-19 cases where health region had been attributed in source data 5
Incidence rates have declined among older age groups and are now highest among young adults aged 20 to 39 years Number of reported cases Incomplete data, per 100,000 population due to reporting lag 35 80+ years 30 25 20 15 20 to 39 years 10 20 to 39 years 5 80+ years 0 01 Jun 01 Jul 01 Aug 01 Sep 01 Oct 01 Nov 01 Dec 01 Jan 01 Feb 01 Mar Date of illness onset* 0 to 19 20 to 39 40 to 59 60 to 79 80+ Data as of March 22, 2021 Note: 7-day moving average *The earliest of the following dates: Onset date, specimen collection date, laboratory testing date, date 6 reported to province or territory, or date reported to PHAC
Number and size of outbreaks in long term care* homes continue to decline Number of Outbreaks 500 450 400 Studies in QC, BC and ON 350 showed high vaccine 300 effectiveness and significant reductions in symptomatic 250 illness1,2 and severe 200 outcomes3 among long-term 150 care home residents and health care workers after 100 single dose of mRNA 50 vaccine. 0 Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar** 2-4 cases 5-9 cases 10-24 cases 25-49 cases 50-99 cases 100+ cases 1INSPQ. https://www.inspq.qc.ca/sites/default/files/publications/3111-vaccine-effectiveness-strategy- Data as of March 23, 2021; by date outbreak first reported vaccination-shortage-covid19.pdf Note: *Including retirement residences. Data based on publicly 2BCCDC. http://www.bccdc.ca/about/news-stories/news-releases/2021/early-findings-show-the-first- 7 vaccine-dose-reduced-the-risk-of-covid-19-by-80-per-cent-or-more reported information. **Data is incomplete for March, 2021 3Brown KA et al. https://doi.org/10.47326/ocsat.2021.02.13.1.0
Indigenous communities’ experience of COVID-19 has moved from strength through challenge to resilience Newly reported cases per 100,000 population Incomplete data, 600 due to reporting lag Territories and most Indigenous First Nations on-reserve Canada communities 500 • were successful in efforts to limit introduction and spread 400 early in the pandemic 300 • innovated rapidly to control introduction and further 200 spread through fall and winter 100 • showed leadership in rolling 0 out vaccines early to protect Mar Apr May Jun Jul Aug Sept Oct Nov Dec Jan Feb Mar high-risk populations COVID-19 incidence in First Nations on-reserve and general Canadian population Data as of March 19, 2021 Note: By episode date 8
Vaccination coverage is increasing across Canada, with benefits being seen in prioritized high-risk populations Cumulative percent of the total population (all ages) who have received at least one dose of a COVID-19 vaccine • More than 4.5 million vaccine doses have been administered • More than 11% of Canadian adults have received at least one dose of vaccine • Nearly 60% of seniors aged 80+ have received at least one dose of vaccine • In the three territories, more than 60% of adults have received at least one dose Data as of March 20, 2021 9
Short-term forecast predicts total cases will increase faster than total deaths due to the recent acceleration in daily cases Cumulative cases predicted to April 4, 2021: Cumulative deaths predicted to April 4, 2021: 973,080 to 1,005,020 22,875 to 23,315 23,500 Cumulative number of deaths 1,000,000 Cumulative number of cases 23,250 975,000 23,000 950,000 22,750 925,000 900,000 22,500 875,000 22,250 850,000 22,000 10Mar 15Mar 20Mar 25Mar 30Mar 04Apr 10Mar 15Mar 20Mar 25Mar 30Mar 04Apr Cumulatively reported cases in Canada by March 20, 2021 Cases added since March 20 when the prediction was made Prediction to Apr. 4, 2021 Lower 95% prediction limit Upper 95% prediction limit Data as of March 23, 2021. Note: Extrapolation based on recent trends using a forecasting model (with ranges of uncertainty). 10
Number and proportion of variant of concern cases are increasing rapidly in several areas of Canada % of cases that are Number of VOC cases VOC* Incomplete data, 1,000 25 due to reporting lag 100 900 90 20 800 80 700 15 70 600 10 60 500 50 5 400 40 300 0 30 18 Dec 01 Jan 15 Jan 29 Jan 12 Feb 26 Feb 12 Mar 200 20 100 10 0 0 18 Dec 01 Jan 15 Jan 29 Jan 12 Feb 26 Feb 12 Mar B.1.1.7 Lineage not assigned B.1.351 P.1 % of all COVID-19 cases that are VOC* Data as of March 24, 2021 Note: By laboratory specimen collection date. *Includes cases with confirmed VOC lineage and cases with a mutation associated with VOC. Cases with no assigned 11 lineage reported only by MB, ON, NB, and PEI, resulting in underestimation. QC and SK are excluded from this analysis.
Longer-range forecast shows stronger public health measures will be required to counter more transmissible variants of concern 12,000 With spread of 10,000 VOCs and we maintain or increase the 8,000 current number of people we contact Reported 6,000 each day cases 4,000 If VOCs are controlled by reducing the 2,000 current number of people we contact 0 each day Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr Data as of March 24, 2021 The PHAC McMaster forecast is based on current estimates transmission rates fitted to reported cases. It assumes VOCs are introduced in mid- Dec (~1 week prior to first detected case in Canada) at very low prevalence; VOCs (all VOCs known to date) are 50% more transmissible than Note: Ensemble of output from PHAC-McMaster wild-type; growth rate AND replacement rate are negatively correlated with the strength of public health measures. Proportion of VOC is 12 obtained by a combination of calibrating to surveillance data as well as information on proportions of cases that are VOC. Recent changes in and Simon Fraser University models testing rates are not taken into account in this forecast. SFU methods are at https://www.sfu.ca/magpie/blog/variant-simple-proactive.html
International experience shows that stronger measures are needed to control epidemic growth driven by more contagious variants of concern Rate per 1,000,000 population Data as of March 23, 2021 Note: 7-day moving average 13
Data inform jurisdictions’ decisions to adjust restrictive public health measures Vaccine coverage and effectiveness (including for circulating VOCs) supports epidemic control and enables improvement of other indicators Sufficient public health Risk reduction COVID-19 Sufficient healthcare measures are in capacity is in place to test, transmission, capacity exists, place for trace, isolate and including VOCs, is including substantial populations who quarantine a high controlled to clinical care capacity are at high risk proportion of cases and manageable levels to respond to surges and in high risk contacts settings Note: Criteria and indicators build on those established by the Special Advisory Committee in July 2020 and published online here: https://www.canada.ca/en/public-health/services/diseases/2019-novel-coronavirus-infection/canadas-reponse/recommendations-lifting- 14 restrictive-public-health-measures.html
Many factors will influence the epidemiological situation and timing for adjusting public health measures… but summer holds promise Key factors include: • Spread of variants of concern that impact transmission, severity of illness and vaccine effectiveness • Degree to which public health measures and our adherence to them are successful in controlling transmission while vaccines roll out • Effect of vaccines in preventing transmission in addition to preventing severe disease and death • How many people are vaccinated 15
Success in vaccines versus variants depends on all of us! Every moment we realise we could be • Updated forecasts, with variants of concern spreading, doing more, better... show we must continue with strong measures until enough people are vaccinated to safely ease restrictions. • Acceleration of vaccination programs will bring more benefits, protecting more Canadians and helping us resume Is an opportunity we can take to do our our valued social and economic activities. best to protect each other... • We are closer now than ever, but it is still too soon to relax measures and too soon to gather in areas where COVID-19 is circulating. • As Passover, Easter, and Ramadan approach, make plans to celebrate safely, including having virtual celebrations to protect and support each other as we make fewest interactions, with the fewest people for this last big push to keep the path clear for vaccines! the shortest time at the greatest distance possible while wearing the best-fitting mask 16
ANNEX 17
Longer-range forecasts show strong resurgence nationally if variants of concern replace wild type virus and public health measures remain at current levels With spread of VOCs and we maintain or increase the current number of people we contact each day Reported cases If VOCs do not spread or are controlled by reducing the current number of people we contact each day Data as of March 24, 2021 The PHAC McMaster forecast is based on current estimates transmission rates fitted to reported cases. It assumes VOCs are introduced in mid- Dec (~1 week prior to first detected case in Canada) at very low prevalence; VOCs (all VOCs known to date) are 50% more transmissible than Note: Ensemble of output from PHAC-McMaster wild-type; growth rate AND replacement rate are negatively correlated with the strength of public health measures. Proportion of VOC is obtained by a combination of calibrating to surveillance data as well as information on proportions of cases that are VOC. Recent changes in 18 and Simon Fraser University models testing rates are not taken into account in this forecast. SFU methods are at https://www.sfu.ca/magpie/blog/variant-simple-proactive.html
Long-range forecasting model assumptions • The forecast combines estimates from two compartmental models reflecting the biology of COVID-19 and public health response. One of the models was developed by PHAC in collaboration with McMaster University, and the other was developed at Simon Fraser University. • The ensemble forecast assumes VOCs are 40-50% more transmissible compared to previous strains. This value is used to estimate the rate at which VOCs replace existing strains. • VOCs are considered to have been introduced at very low prevalence a week prior to the first reported case in each province. The proportion of cases due to VOCs over time in each jurisdiction is then adjusted to match provincial VOC screening/surveillance data. • Changes to public health measures impact the speed with which VOCs replace previous strains; stronger public health measures result in slower growth and replacement rates. The impact of public health measures on controlling pre-existing strains and variants is obtained by fitting the model to surveillance data while accounting for the estimated prevalence of variant cases. • The ensemble forecast includes a graph showing expected increases in cases with VOC spread (grey line), and a graph which assumes that transmission (including VOCs) is controlled (purple line) by public health measures that are equivalent to a 20-30% reduction in rates of contact between people in Canada • Forecasts are limited to mid-April. This is because assumptions related vaccination roll-out are not incorporated in the model for the below reasons: • Only a small proportion of the Canadian public have been vaccinated • At present there is uncertainty about the degree to which vaccines protect against infection and transmission • The current target groups for vaccination (particularly older adults) contribute little to transmission. 19
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