Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021

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Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Update on COVID-19 in
Canada: Epidemiology
and Modelling
March 26th, 2021

Canada.ca/coronavirus
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
National daily case counts and severity indictors are back on the rise
     Number of cases/                                                                                                                     Number of
   Total hospitalizations                                                                                                                  deaths
                                                                                      On average over the past 7 days:
   9,000                                                                              4,057 cases                                               900
   8,000                                                                              2,194 hospitalizations                                    800
                                                                                      29 deaths
   7,000                                                                                                                                        700
   6,000                                                                                                                                        600
   5,000                                                                                                                                        500
   4,000                                                                                                                                        400
   3,000                                                                                                                                        300
   2,000                                                                                                                                        200
   1,000                                                                                                                                        100
        0                                                                                                                                       0
        01Mar      01Apr 01May          01Jun     01Jul     01Aug     01Sep 01Oct         01Nov 01Dec          01Jan     01Feb 01Mar

                                                    Cases            Hospitalizations             Deaths
Data as of March 23, 2021
Note: 7-day moving averages. Total hospitalizations include all people in hospital on that day, and the average length of stay in hospital is         1
approximately two weeks.
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Each new case in Canada is spreading infection to more than one
 person, bringing the epidemic back into a growth pattern

 2

                                                                                                            Since early March,
1.5             When Rt is consistently >1,                                                                 Canada’s Rt has been >1
                the epidemic is growing

 1
                                                                         When Rt is consistently
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
COVID-19 incidence is increasing in provinces west of the Atlantic region

                                                                    AB                                SK
               40                   BC            40                                 40

                                                                                     30
               30                                 30

                                                                                     20
               20                                 20

                                                                                     10
               10                                 10

                0                                  0                                  0

Number of       01Apr       01Jul   01Oct 01Jan   01Apr    01Jul    01Oct    01Jan   01Apr    01Jul   01Oct   01Jan
cases per
 100,000
                                    MB                              ON                                QC
population     40
                                                  40                                  40

                                                  30                                  30
               30
                                                  20
               20                                                                     20

                                                  10
               10                                                                     10

                0                                  0                                      0

                01Apr       01Jul   01Oct 01Jan   01Apr     01Jul   01Oct    01Jan   01Apr    01Jul   01Oct   01Jan

                                                       Date of case report

Data as of March 23, 2021
                                                                                                                      3
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
COVID-19 hospitalization rates levelling off or increasing in provinces
with elevated disease activity
 Number of cases in hospital
   per 100,000 population
 30

  25

  20

  15

  10

   5

   0
   01 Apr    01 May     01 Jun   01 Jul    01 Aug   01 Sep   01 Oct   01 Nov   01 Dec    01 Jan   01 Feb 01 Mar

                      AB              BC              MB              ON            QC              SK

Data as of March 22, 2021
Note: 7-day moving average                                                                                        4
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Highest incidence of COVID-19 occurring in Northern health regions of
  British Columbia, Saskatchewan, Manitoba, and parts of Ontario
                                                                                   Cases per 100,000 population (Mar 7 – Mar 22, 2021)
                                                                                       400 +
                                                                                                              37 of 99 health regions
                                                                                    201 - 400
                                                                                                              with > 100 cases per
                                                                                    101 - 200
                                                                                                              100,000 population
                                                                                     51 - 100
                                                                                                              over a 14-day period
                                                                                      26 - 50
                                                                                       1 - 25
                                                                                            0

Data sources: COVID-19 Canada Open
Data Working Group. Epidemiological
data from the COVID-19 Outbreak in
Canada

Data as of March 22, 2021
Note: Map only shows COVID-19 cases where health region had been attributed in source data                                              5
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Incidence rates have declined among older age groups and are now
  highest among young adults aged 20 to 39 years
     Number of reported cases                                                                                                  Incomplete data,
      per 100,000 population                                                                                                  due to reporting lag
         35
                                                                                                                    80+ years
         30

         25

         20

         15                                                                                                                  20 to 39 years
         10
                                                20 to 39 years
           5
                      80+ years
           0
           01 Jun        01 Jul       01 Aug         01 Sep     01 Oct      01 Nov   01 Dec               01 Jan        01 Feb         01 Mar
                                                              Date of illness onset*
                                           0 to 19        20 to 39       40 to 59    60 to 79               80+
Data as of March 22, 2021
Note: 7-day moving average *The earliest of the following dates: Onset date, specimen collection date, laboratory testing date, date             6
reported to province or territory, or date reported to PHAC
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Number and size of outbreaks in long term care* homes continue to
  decline
    Number of Outbreaks
    500
    450
    400                                                                                                                           Studies in QC, BC and ON
    350                                                                                                                           showed high vaccine
    300                                                                                                                           effectiveness and significant
                                                                                                                                  reductions in symptomatic
    250                                                                                                                           illness1,2 and severe
    200                                                                                                                           outcomes3 among long-term
    150                                                                                                                           care home residents and
                                                                                                                                  health care workers after
    100
                                                                                                                                  single dose of mRNA
     50                                                                                                                           vaccine.
       0
            Mar     Apr    May      Jun     Jul    Aug     Sep   Oct     Nov        Dec         Jan        Feb Mar**
            2-4 cases      5-9 cases      10-24 cases      25-49 cases       50-99 cases             100+ cases

                                                                   1INSPQ.  https://www.inspq.qc.ca/sites/default/files/publications/3111-vaccine-effectiveness-strategy-
Data as of March 23, 2021; by date outbreak first reported         vaccination-shortage-covid19.pdf
Note: *Including retirement residences. Data based on publicly     2BCCDC. http://www.bccdc.ca/about/news-stories/news-releases/2021/early-findings-show-the-first-
                                                                                                                                                                            7
                                                                   vaccine-dose-reduced-the-risk-of-covid-19-by-80-per-cent-or-more
reported information. **Data is incomplete for March, 2021         3Brown KA et al. https://doi.org/10.47326/ocsat.2021.02.13.1.0
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Indigenous communities’ experience of COVID-19 has moved from
 strength through challenge to resilience
Newly reported cases per
100,000 population                                                     Incomplete data,
 600                                                                  due to reporting lag   Territories and most Indigenous
              First Nations on-reserve     Canada                                            communities
 500                                                                                         • were successful in efforts to
                                                                                                limit introduction and spread
 400                                                                                            early in the pandemic

 300                                                                                         • innovated rapidly to control
                                                                                               introduction and further
 200
                                                                                               spread through fall and winter
 100
                                                                                             • showed leadership in rolling
   0                                                                                           out vaccines early to protect
       Mar   Apr   May       Jun   Jul   Aug   Sept Oct   Nov   Dec    Jan   Feb Mar           high-risk populations

             COVID-19 incidence in First Nations on-reserve and general
                               Canadian population
 Data as of March 19, 2021
 Note: By episode date                                                                                                      8
Update on COVID-19 in Canada: Epidemiology and Modelling - Canada.ca/coronavirus March 26th, 2021
Vaccination coverage is increasing across Canada, with benefits being
   seen in prioritized high-risk populations
                            Cumulative percent of the total
                            population (all ages) who have received
                            at least one dose of a COVID-19 vaccine   • More than 4.5 million vaccine
                                                                        doses have been administered

                                                                      • More than 11% of Canadian adults
                                                                        have received at least one dose of
                                                                        vaccine

                                                                      • Nearly 60% of seniors aged 80+
                                                                        have received at least one dose of
                                                                        vaccine

                                                                      • In the three territories, more than
                                                                        60% of adults have received at
                                                                        least one dose

Data as of March 20, 2021
                                                                                                              9
Short-term forecast predicts total cases will increase faster than total
              deaths due to the recent acceleration in daily cases
                                       Cumulative cases predicted to April 4, 2021:                                      Cumulative deaths predicted to April 4, 2021:
                                                  973,080 to 1,005,020                                                                22,875 to 23,315
                                                                                                                      23,500

                                                                                        Cumulative number of deaths
                   1,000,000
Cumulative number of cases

                                                                                                                      23,250
                             975,000
                                                                                                                      23,000
                             950,000
                                                                                                                      22,750
                             925,000

                             900,000                                                                                  22,500

                             875,000                                                                                  22,250

                             850,000                                                                                  22,000
                                       10Mar 15Mar    20Mar   25Mar   30Mar   04Apr                                            10Mar   15Mar   20Mar   25Mar    30Mar       04Apr

                                 Cumulatively reported cases in Canada by March 20, 2021                              Cases added since March 20 when the prediction was made
                                 Prediction to Apr. 4, 2021               Lower 95% prediction limit                                           Upper 95% prediction limit

    Data as of March 23, 2021.
    Note: Extrapolation based on recent trends using a forecasting model (with ranges of uncertainty).                                                                              10
Number and proportion of variant of concern cases are increasing
   rapidly in several areas of Canada
                                                                                                                                           % of cases that are
     Number of VOC cases                                                                                                                          VOC*
                                                                                                                                       Incomplete data,
      1,000      25                                                                                                                   due to reporting lag 100

         900                                                                                                                                                     90
                 20
         800                                                                                                                                                     80
         700     15                                                                                                                                              70
         600     10                                                                                                                                              60
         500                                                                                                                                                     50
                  5
         400                                                                                                                                                     40
         300      0                                                                                                                                              30
                  18 Dec      01 Jan       15 Jan     29 Jan      12 Feb      26 Feb      12 Mar
         200                                                                                                                                                     20
         100                                                                                                                                                     10
            0                                                                                                                                                    0
            18 Dec                01 Jan               15 Jan               29 Jan                 12 Feb             26 Feb               12 Mar

                   B.1.1.7           Lineage not assigned               B.1.351            P.1         % of all COVID-19 cases that are VOC*
Data as of March 24, 2021
Note: By laboratory specimen collection date. *Includes cases with confirmed VOC lineage and cases with a mutation associated with VOC. Cases with no assigned        11
lineage reported only by MB, ON, NB, and PEI, resulting in underestimation. QC and SK are excluded from this analysis.
Longer-range forecast shows stronger public health measures will be
 required to counter more transmissible variants of concern

        12,000
                                                                                                                                                               With spread of
        10,000                                                                                                                                                 VOCs and we
                                                                                                                                                               maintain or
                                                                                                                                                               increase the
         8,000                                                                                                                                                 current number of
                                                                                                                                                               people we contact
Reported
         6,000                                                                                                                                                 each day
cases

         4,000                                                                                                                                                 If VOCs are
                                                                                                                                                               controlled by
                                                                                                                                                               reducing the
         2,000                                                                                                                                                 current number of
                                                                                                                                                               people we contact
              0                                                                                                                                                each day

                   Mar Apr May Jun Jul         Aug      Sep Oct Nov Dec Jan Feb Mar Apr

 Data as of March 24, 2021                      The PHAC McMaster forecast is based on current estimates transmission rates fitted to reported cases. It assumes VOCs are introduced in mid-
                                                Dec (~1 week prior to first detected case in Canada) at very low prevalence; VOCs (all VOCs known to date) are 50% more transmissible than
 Note: Ensemble of output from PHAC-McMaster    wild-type; growth rate AND replacement rate are negatively correlated with the strength of public health measures. Proportion of VOC is
                                                                                                                                                                                               12
                                                obtained by a combination of calibrating to surveillance data as well as information on proportions of cases that are VOC. Recent changes in
 and Simon Fraser University models             testing rates are not taken into account in this forecast. SFU methods are at https://www.sfu.ca/magpie/blog/variant-simple-proactive.html
International experience shows that stronger measures are needed to
  control epidemic growth driven by more contagious variants of concern
    Rate per 1,000,000 population

Data as of March 23, 2021
Note: 7-day moving average                                                13
Data inform jurisdictions’ decisions to adjust restrictive public health
measures

           Vaccine coverage and effectiveness (including for circulating VOCs) supports epidemic control and
                                       enables improvement of other indicators

                                      Sufficient public health                                                Risk reduction
        COVID-19                                                           Sufficient healthcare              measures are in
                                       capacity is in place to test,
         transmission,                                                       capacity exists,                   place for
                                       trace, isolate and
         including VOCs, is                                                  including substantial              populations who
                                       quarantine a high
         controlled to                                                       clinical care capacity             are at high risk
                                       proportion of cases and
         manageable levels                                                   to respond to surges               and in high risk
                                       contacts
                                                                                                                settings

Note: Criteria and indicators build on those established by the Special Advisory Committee in July 2020 and published online here:
https://www.canada.ca/en/public-health/services/diseases/2019-novel-coronavirus-infection/canadas-reponse/recommendations-lifting-   14
restrictive-public-health-measures.html
Many factors will influence the epidemiological situation and timing for
adjusting public health measures… but summer holds promise

    Key factors include:
    • Spread of variants of concern that impact transmission, severity of illness and vaccine effectiveness
    • Degree to which public health measures and our adherence to them are successful in controlling
      transmission while vaccines roll out
    • Effect of vaccines in preventing transmission in addition to preventing severe disease and death
    • How many people are vaccinated

                                                                                                              15
Success in vaccines versus variants depends on all of us!
                                                                Every moment we realise we could be
 • Updated forecasts, with variants of concern spreading,       doing more, better...
   show we must continue with strong measures until
   enough people are vaccinated to safely ease restrictions.

 • Acceleration of vaccination programs will bring more
   benefits, protecting more Canadians and helping us resume   Is an opportunity we can take to do our
   our valued social and economic activities.                  best to protect each other...

 • We are closer now than ever, but it is still too soon to
   relax measures and too soon to gather in areas where
   COVID-19 is circulating.

 • As Passover, Easter, and Ramadan approach, make
   plans to celebrate safely, including having virtual
   celebrations to protect and support each other as we make
                                                               fewest interactions, with the fewest people for
   this last big push to keep the path clear for vaccines!
                                                                  the shortest time at the greatest distance
                                                                 possible while wearing the best-fitting mask

                                                                                                           16
ANNEX

        17
Longer-range forecasts show strong resurgence nationally if variants of
concern replace wild type virus and public health measures remain at
current levels
                                                                                                                                             With spread of VOCs and we
                                                                                                                                             maintain or increase the
                                                                                                                                             current number of people we
                                                                                                                                             contact each day

Reported
cases                                                                                                                                        If VOCs do not spread or are
                                                                                                                                             controlled by reducing the
                                                                                                                                             current number of people we
                                                                                                                                             contact each day

Data as of March 24, 2021                     The PHAC McMaster forecast is based on current estimates transmission rates fitted to reported cases. It assumes VOCs are introduced in mid-
                                              Dec (~1 week prior to first detected case in Canada) at very low prevalence; VOCs (all VOCs known to date) are 50% more transmissible than
Note: Ensemble of output from PHAC-McMaster   wild-type; growth rate AND replacement rate are negatively correlated with the strength of public health measures. Proportion of VOC is
                                              obtained by a combination of calibrating to surveillance data as well as information on proportions of cases that are VOC. Recent changes in
                                                                                                                                                                                             18
and Simon Fraser University models            testing rates are not taken into account in this forecast. SFU methods are at https://www.sfu.ca/magpie/blog/variant-simple-proactive.html
Long-range forecasting model assumptions
 • The forecast combines estimates from two compartmental models reflecting the biology of COVID-19 and public health
   response. One of the models was developed by PHAC in collaboration with McMaster University, and the other was
   developed at Simon Fraser University.
 • The ensemble forecast assumes VOCs are 40-50% more transmissible compared to previous strains. This value is used
   to estimate the rate at which VOCs replace existing strains.
 • VOCs are considered to have been introduced at very low prevalence a week prior to the first reported case in each
   province. The proportion of cases due to VOCs over time in each jurisdiction is then adjusted to match provincial VOC
   screening/surveillance data.
 • Changes to public health measures impact the speed with which VOCs replace previous strains; stronger public health
   measures result in slower growth and replacement rates. The impact of public health measures on controlling pre-existing
   strains and variants is obtained by fitting the model to surveillance data while accounting for the estimated prevalence of
   variant cases.
 • The ensemble forecast includes a graph showing expected increases in cases with VOC spread (grey line), and a graph
   which assumes that transmission (including VOCs) is controlled (purple line) by public health measures that are equivalent
   to a 20-30% reduction in rates of contact between people in Canada
 • Forecasts are limited to mid-April. This is because assumptions related vaccination roll-out are not incorporated in the
   model for the below reasons:
   • Only a small proportion of the Canadian public have been vaccinated
   • At present there is uncertainty about the degree to which vaccines protect against infection and transmission
   • The current target groups for vaccination (particularly older adults) contribute little to transmission.

                                                                                                                                 19
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