Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure

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Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Leadership in
Gene Therapy

      Corporate Presentation
            September 2021
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Forward-looking Statements

 This presentation contains forward-looking statements. All statements other than statements of historical fact are forward-
 looking statements, which are often indicated by terms such as “anticipate,” “believe,” “could,” “estimate,” “expect,” “goal,”
 “intend,” “look forward to,” “may,” “plan,” “potential,” “predict,” “project,” “should,” "will,” “would” and similar expressions.
 Forward-looking statements are based on management's beliefs and assumptions and on information available to
 management only as of the date of this presentation. These forward-looking statements include, but are not limited to,
 statements regarding the development of our gene therapies, the success of our collaborations, and the risk of cessation,
 delay or lack of success of any of our ongoing or planned clinical studies and/or development of our product candidates.
 Our actual results could differ materially from those anticipated in these forward-looking statements for many reasons,
 including, without limitation, risks associated with the COVID-19 pandemic, collaboration arrangements, our and our
 collaborators’ clinical development activities, regulatory oversight, development of product candidates, product
 commercialization and intellectual property claims, as well as the risks, uncertainties and other factors described under the
 heading "Risk Factors" in uniQure’s Annual Report on Form 10-K filed on March 1, 2021 and Quarterly Report on Form 10-Q
 filed July 26, 2021. Given these risks, uncertainties and other factors, you should not place undue reliance on these
 forward-looking statements, and we assume no obligation to update these forward-looking statements, even if new
 information becomes available in the future.

LEA DERS HI P IN GENE THERA PY                                                                                     SEPT EMB E R 2021   |   2
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
uniQure: our focus

 AAV Engine: Leveraging our leading technology platform to develop and
 commercialize products targeting the CNS, liver and heart/muscle

                                         AAV Technology Engine
                                           Manufacturing & Enabling Tools

L EAD
LEA   ERS H
    DERS  HII PP I N
                   INGEN E THTHERA
                      GENE    ERAP YPY                                       S EP TEMBER
                                                                            SEPT          2021
                                                                                  EMB E R 2021   |   3
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
inGENEuity: our history of innovation

 uniQure: A gene therapy pioneer with a >20-year history and deeply engrained
 culture of innovation across an increasingly validated platform

  First                          First          First         First

LEA DERS HI P IN GENE THERA PY                                        SEPT EMB E R 2021   |   4
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
inGENEuity: our history of innovation

 uniQure: A gene therapy pioneer with a >20-year history and deeply engrained
 culture of innovation across an increasingly validated platform

  15 years                       100+ patients   World-class   Leading

LEA DERS HI P IN GENE THERA PY                                     SEPT EMB E R 2021   |   5
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Re-imaGENEing the R&D pipeline

 Doubling the pipeline by 2026

   5-year
   Pipeline                      3-4 Phase 3
                                 commercial
                                               5-8 Phase 1/ 2
                                               programs
                                                                7-12
                                                                preclinical
   Goals:                        programs                       programs

LEA DERS HI P IN GENE THERA PY                                       SEPT EMB E R 2021   |   6
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Re-imaGENEing the R&D pipeline

              Larger market opportunities built on validated targets and technologies

                                         ●   Best and/or first in class
                                         ●   Human validation
        Key criteria:
                                         ●   Leverage proven technologies
                                         ●   Larger indications

L EAD
LEA   ERS H
    DERS  HII PP I N
                   INGEN E THTHERA
                      GENE    ERAP YPY                                        S EP TEMBER
                                                                             SEPT          2021
                                                                                   EMB E R 2021   |   7
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Re-imaGENEing our enabling technolgy

 Leveraging a broad, enabling technology platform to build an optimized and
 differentiated pipeline

   Re-imagining                  Next-gen tools developed:               What we aim to accomplish:

   where/how                     ● Novel AAV capsids                     ● Potent expression

   we deliver…                   ● Next-gen promoters                    ● Targeted delivery
                                 ● Optimized administration techniques   ● Uniform transduction
                                 ● Improved formulations                 ● Redosing

LEA DERS HI P IN GENE THERA PY                                                                 SEPT EMB E R 2021   |   8
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Re-imaGENEing our enabling technolgy

 Leveraging a broad, enabling technology platform to build an optimized and
 differentiated pipeline

   Re-imagining                  Next-gen tools:                       What we aim to accomplish:

   what we                       miQURE® (gene silencing)              ● Insertion of genes

   deliver…                      goQURE     (gene silence/replace)     ● Suppression of genes/proteins
                                                                       ● Substitution of genes
                                 AbQURE      (vectorized antibodies)

LEA DERS HI P IN GENE THERA PY                                                                   SEPT EMB E R 2021   |   9
Leadership in Gene Therapy - Corporate Presentation September 2021 - uniQure
Re-imaGENEing our in-house manufacturing

 Manufacturing for the future: Establishing larger scale and highly cost-
 effective capabilities to address more prevalent disorders

LEA DERS HI P IN GENE THERA PY                                      SEPT EMB E R 2021   |   10
LEA DERS HI P IN GENE THERA PY   SEPT EMB E R 2021   |   11
Recent company progress & upcoming events

                                 •   Closed commercialization and licensing agreement with CSL
                                 •   Presented 52-week data from HOPE-B pivotal trial
      Hemophilia B
                                 •   On track to announce 78-week top-line data and prepare
                                     regulatory submissions for marketing approval

                                 •   Began patient enrollment in second dose cohort of Phase 1-2 U.S. clinical trial
      Huntington’s               •   On track to begin patient enrollment in Phase 1b-2 European clinical trial
                                 •   Preliminary imaging/biomarker data on first four patients by year-end 2021

   Spinocerebellar               •   Initiating IND-enabling studies
 Ataxia Type 3 (SCA3)            •   Anticipate submitting IND application by year-end 2022

                                 •   Hosted Research & Development Day
  Manufacturing and
                                 •   Continue to increase manufacturing scale and capacity
 Technology Platform
                                 •   Conduct manufacturing process validation to support Hem B regulatory filings

LEA DERS HI P IN GENE THERA PY                                                                     SEPT EMB E R 2021   |   12
HOPE-B
52-Week
Analysis
Hemophilia B
  Etranacogene dezaparvovec
  (AMT-061)
  Etranacogene dezaparvovec
  (AMT-161)
A GL O BAL L EAD ER I N GEN E TH ERAP Y   MAY 2021   13
HOPE-B pivotal trial: study design
• Key inclusion criteria
    • Male adults ≥18 years
    • FIX activity ≤2% of normal
    • Continuous prophylaxis for ≥2 months
• Key exclusion criteria
    • Factors that might affect the evaluation of
        AMT-061 efficacy or safety
          • FIX inhibitors
          • Active hepatitis B/C infection
          • Uncontrolled HIV infection
• Pre-existing anti-AAV5 NAbs were assessed,
  but not used as an exclusion criteria
• No prophylactic immunosuppression

HIV, human immunodeficiency virus; NAbs, neutralizing antibodies; wks, weeks.

LEA DERS HI P IN GENE THERA PY                                                  SEPT EMB E R 2021   |   14
Etranacogene dezaparvovec (EtranaDez):
                     HOPE-B Phase III pivotal study

•   54 patients treated as of March 2020
•   Severe and moderately-severe Hemophilia B patients
•   Open label, single-dose, multi-center, multi-national trial
•   Patients with AAV5 neutralizing antibodies not excluded
•   Patients served as their own control; 6-month lead-in to establish baseline
•   Study objectives:
        •   Increase FIX activity
        •   Reduce frequency of bleeding episodes
        •   Decrease use of FIX replacement therapy
        •   Assess efficacy and safety

LEA DERS HI P IN GENE THERA PY                                                    SEPT EMB E R 2021   |   15
Etranacogene dezaparvovec (EtranaDez):
                     HOPE-B Phase III pivotal study

 Primary endpoint
  • 52-week ABR after stable FIX expression has been achieved, compared to ABR in lead-in period
  • ABR will be measured from week 26 to week 78 after infusion

 Secondary endpoints
  • FIX activity at 6, 12 and 18 months after dosing
  • Rates of total, spontaneous, traumatic, and FIX treated/untreated bleeds
  • FIX consumption compared with lead in period
  • Correlation of FIX activity levels with pre-existing anti-AAV5 neutralizing antibody titers
  • Safety

LEA DERS HI P IN GENE THERA PY                                                                    SEPT EMB E R 2021   |   16
Overview of FIX activity up to 52 weeks (month 12)

 • FIX activity increased to a mean of 39.0%
   at month 6
           •     Change from baseline +37.8%

 • FIX activity maintained at a mean of
   41.5% at month 12
           •     Change from baseline +40.3%

 aUncontaminated      central laboratory data (the visit did not occur within 10 days of exogeneous FIX use). FIX levels beginning with the Week 3 assessment were used in the analysis. Subjects with 0
 uncontaminated central-laboratory post-AMT-061 values had change from baseline assigned to zero for this analysis and had their post-baseline values set equal to their baseline value. Baseline factor IX
 was imputed based on subject’s historical hemophilia B severity documented on the case record form. If the subject had documented severe factor IX deficiency (FIX plasma level < 1%), their baseline
 factor IX activity level is imputed as 1%. If the subject had documented moderately severe factor IX deficiency (factor IX plasma level ≥1% and ≤ 2%), their baseline factor IX activity level was imputed as
 2%. SD, standard deviation.
LEA DERS HI P IN GENE THERA PY                                                                                                                                             SEPT EMB E R 2021            |   17
HOPE-B: Endogenous FIX activity to 52 weeks 1

                                                                                                                                                 Stable and durable FIX activity
                                                                                                                                                 post-etranacogene
                                                                                                                                                 dezaparvovec treatment

                                                                                                                                                 Following treatment, FIX activity
                                                                                                                                                 increased rapidly to a mean of
                                                                                                                                                 39.0 (SD; min, max) IU/dL
                                                                                                                                                 (±18.7; 8.2, 97.1) at Week 26
                                                                                                                                                 and 41.5 IU/dL (±21.7; 5.9,
                                                                                                                                                 113.0) at Week 52.

                                                                                                                                                 No clinically meaningful
                                                                                                                                                 relationship was seen between
                                                                                                                                                 pre-existing anti-AAV5 NABs and
                                                                                                                                                 individual subject mean FIX
                                                                                                                                                 between month 6 and 12.
1Uncontaminated central laboratory data (the visit did not occur within 5X half life). FIX levels beginning with the Week 3 assessment were used in the analysis. Subjects with 0 uncontaminated central -
laboratory post-AMT-061 values had change from baseline assigned to zero for this analysis and had their post -baseline values set equal to their baseline value.

LEA DERS HI P IN GENE THERA PY                                                                                                                                               SEPT EMB E R 2021               |   18
No clinically significant impact of pre-existing NABs on
                     mean FIX activity between months 6 to 12
   Analysis of all treated subjects including subject with patrial dose and with NAB titer 3212

LEA DERS HI P IN GENE THERA PY                                                     SEPT EMB E R 2021   |   19
Spontaneous bleeds were reduced further in the second
                              six months after treatment

                    Sustained FIX levels were associated with significantly reduced spontaneous bleeding
                    during the first year of follow-up

                    Per FDA guidance, data shows all reported bleeds, even if adjudicated by the investigator
                    to be non-bleed or a continuing bleed

Lead-in period includes 33.12 observed years in 54 subjects (mean 32 weeks per subject); Post -treatment period excludes the first 21 days (23 weeks per subject)
LEA DERS HI P IN GENE THERA PY                                                                                                                                      SEPT EMB E R 2021   |   20
Adjusted annualized bleeding rates (ABR) reduced on
                              treatment compared with lead-in period
During post-treatment period of up to 2 years, 30 subjects (55.6%) had no bleeds, 39 subjects (72.2%)
had no bleeds treated with FIX

Lead-in period includes 33.12 observed years in 54 subjects (mean 32 weeks per subject); Post -treatment period excludes the first 21 days (23 weeks per subject)

LEA DERS HI P IN GENE THERA PY                                                                                                                                      SEPT EMB E R 2021   |   21
Substantial reductions in FIX replacement and use of
                              prophylaxis when compared with lead-in

At 52 weeks follow-up, compared with the lead-in period

          •     96% (52/54) subjects discontinued prophylaxis and remain prophylaxis-free

          •     96% reduction in FIX consumption in IU/year (mean reduction of 246,537 IU/year)

          •     96% reduction in FIX infusion rate per year (adjusted mean 72.5 to 3.0, p
Post-treatment adverse events

• 53 subjects had 408 AEs
• 39 subjects had 91 treatment related AEs
• 9 subjects received steroid treatment for transaminase
  elevations
     • All discontinued steroid use prior to Week 26
     • FIX activity preserved in the mild range (8%-39%)
• 7 subjects had infusion related reactions*
     • Infusion discontinued in 1 (received ~10% dose)
     • Infusion completed successfully in remaining 6
• No inhibitors were reported
• No statistical relationship between safety and pre-
  existing NAbs was observed

*Infusion reactions include events reported on the day of dosing as probably or possibly related to treatment

LEA DERS HI P IN GENE THERA PY                                                                                  SEPT EMB E R 2021   |   23
A global licensing deal with CSL Behring in hemophilia B

  Transaction is a historic collaboration in gene therapy and hemophilia, with uniQure eligible to
  receive more than $2B in total economics
         •   $450M upfront payment received in 2Q 2021
         •   $1.6B in regulatory and commercial milestones
         •   Double-digit royalty payments up to low-twenties percentage of net product sales
         •   Full reimbursement of uniQure’s clinical and regulatory costs

  Collaboration enables uniQure to leverage CSL Behring’s world-class global hemophilia
  commercial infrastructure
         •    Hemophilia is a well-established, specialized and highly competitive global market
         •    CSL Behring has been a leader in bleeding disorders for more than 30 years
         •    Deep, long-standing relationships with hemophilia communities worldwide
         •    One of the broadest product portfolios in hematology and thrombosis
         •    $1B+ in hemophilia sales in 2019 with commercial sales in more than 100 countries
LEA DERS HI P IN GENE THERA PY                                                                  SEPT EMB E R 2021   |   24
AMT-130

LEA DERS HI P IN GENE THERA PY   SEPT EMB E R 2021   |   25
Huntington’s disease (HD): an overview

   • Autosomal dominant inherited disorder
     (50% risk if your parent has HD)
   • Affects ~25,000 patients each in U.S./EU
   • Initially described based upon
     characteristic chorea
   • Dystonia, incoordination, ataxia, and later
     rigidity and bradykinesia contribute to
     functional impairment
   • Cognitive and behavioral symptoms may
     occur early
   • Progressive course from onset ~age 45
     to death over 10-15 years

LEA DERS HI P IN GENE THERA PY                             SEPT EMB E R 2021   |   26
AMT-130: a gene therapy approach for early manifest HD
• AAV5-miHTT (AMT-130)
    • Replication-deficient adeno-associated viral
      vector serotype 5 (AAV5)
    • Codes for microRNA (miRNA) that targets the
      HTT mRNA at exon 1
    • Blocks expression of HTT protein

Extensive preclinical validation
 Model                                   Efficacy             Safety           Distribution
 Cultured human neurons                      ✓                   ✓
 Rodents
 (HD rat4)                                   ✓                   ✓
 (4 types HD mouse3)
 NHP
 (Non-human primate1)                        ✓                   ✓                   ✓
 Pig
 (tgHD Minipig 2)                            ✓                   ✓                   ✓
 1) Samaranch L, et al. Gene Ther 2017;24:253-261; 2) Evers M, et al. Mol Ther 2017;5(Suppl. 1):247; 3) Spronck EA, et al. Hum Ge ne Ther 2017;28:A78; 4) Miniarikova J, et al. Gene Therapy
 2017;24:630-639; 5) Evers MM et al. Mol Ther. 2018;26(9):2163-2177; 6) Spronck EA et al. Mol Ther Methods Clin Dev. 2019 Mar 16;13:334-343; 7) Keskin S et al. Mol Ther Methods Clin Dev. 2019 Oct
 4;15:275-284; 8) Caron NS et al. Nucleic Acids Res. 2019 Nov 20. pii: gkz976. doi: 10.1093/nar/gkz976
LEA DERS HI P IN GENE THERA PY                                                                                                                                      SEPT EMB E R 2021           |     27
AMT-130: longitudinal data in transgenic pigs

                                    brain                                                            CSF
                                 mHTT protein                                                        NF-L
                                                                           80000
                                                                                                          Control (naive)
                                                                                                          rAAV5-miHTT

                                                        CSF NF-L (pg/mL)
                                                                           60000

                                                                           40000

                                                                           20000

                                                                                  0
                                                                                           e d d m m m m m m m m
                                                                                         os 14 28 3 6 9 12 15 18 21 24
                                                                                    -d
                                                                              p   re

 • Stable miHTT expression, mHTT protein lowering, and long-term baseline NFL levels
 • Trend confirmed up to 36 months (topline data)
 Vallès, Evers et al (Sci Transl Med, 2021)
LEA DERS HI P IN GENE THERA PY                                                                                              SEPT EMB E R 2021   |   28
AMT-130: maximizing potential for clinical impact

Our approach optimizes benefit/risk tradeoff

       • Focused neurosurgical delivery to most relevant
         brain regions
       • Not targeting 100% knock-down or entire CNS
              •   50-75% maximal knock-down in striatum
                  where benefit/risk of knockdown is clear
              •   25-50% cortical knock-down via
                  anterograde/retrograde transport from site
                  of caudate/putamen infusion

LEA DERS HI P IN GENE THERA PY                                        SEPT EMB E R 2021   |   29
AMT-130: knocking down wildtype (wtHTT) and mutant HTT
                           (mHTT) safe and effective in adult animals

 • wtHTT inactivation during adulthood does not
   result in any phenotype 1,2

 • wtHTT + mHTT results in HD

 • Partial reduction of mHTT or both wtHTT/mHTT in
   adulthood slows disease progression and delay
   onset of HD symptoms 3-8

                                         The partial reduction of wtHTT in normal adult rodents
                                           and NHPs was generally safe and well tolerated 12
1. WangG, et al. Proc Natl Acad Sci U S A. 2016;113(12):3359-3364. 2. Pla P, et al. PLoS One. 2013;8(9):e73902. 3. Kordasiewicz HB, et al. Neuron. 2012;74(6):1031-1044. 4. Southwell AL, et al. Sci Transl
Med. 2018;10(461):eaar3959. 5. Boudreau RL, et al. Mol Ther. 2009;17(6):1053-1063. 6. Drouet V, et al. Ann Neurol. 2009;65(3):276-285. 7. Stanek LM, et al. Hum Gene Ther. 2014;25(5):461-474. 8. Leavitt
BR, Kordasiewicz HB, Schobel SA. Huntingtin-Lowering Therapies for Huntington Disease: A Review of the Evidence of Potential Benefits and Risks. JAMA Neurol . 2020;77(6):764–772.
LEA DERS HI P IN GENE THERA PY                                                                                                                                             SEPT EMB E R 2021           |      30
AMT-130: phase 1-2 study design

• Double-blind, randomized, imitation-surgery    • MRI, magnetic resonance imaging
   (sham) controlled study
• 2 dose levels of AMT-130
     • Cohort 1: 50%/25% striatal/cortical
       knockdown
     • Cohort 2: 75%/50% striatal/cortical
       knockdown
• One-time bilateral stereotaxic neurosurgical
  administration of AMT-130
• MRI-guided convection enhanced delivery
• 5-year follow-up (blinded first 12 months)
• Conducted at ~12 HD centers in the U.S.
   including 3 sites performing surgery

LEA DERS HI P IN GENE THERA PY                                                 SEPT EMB E R 2021   |   31
AMT-130: phase 1-2 initial inclusion/exclusion criteria

Key inclusion criteria                         Key exclusion criteria
• 25 to 65 years of age                        • Presence of an implanted deep brain
                                                 stimulator devices
• Early manifest HD
     • Total functional capacity (TFC) 9-13    • Relevant brain/spinal pathology
       (stage 1 or early stage 2)              • Medical contradictions to anesthesia
     • Diagnostic Classification Level (DCL)
       DCL=4 (motor manifest) or               • Previous gene therapy or RNA-/DNA-targeted
       DCL=3 (multidimensional)                  HD investigational agents
• ≥40 CAG
• Putamen volume of ≥2.5 cm3 (per side) and
  caudate volume of ≥2.0 cm3 (per side)
• Stable concomitant prior to screening
  HD medications for ≥3 months

LEA DERS HI P IN GENE THERA PY                                                     SEPT EMB E R 2021   |   32
AMT-130: phase 1-2 proof-of-concept endpoints

                                Biomarkers                      Clinical Parameters*
                                ● NF-L (neurofilament light)    ● Total motor score
                                ● mHTT in CSF                   ● Total functional capacity
                                ● Other exploratory markers

                                Imaging (MRI and MRS)           Quantitative Motor Function
                                ● Measures of neural function   ● Finger, hand and foot tapping
                                ● Striatal volume (atrophy)     ● Grasping and lifting (chorea)

*Unified Huntington’s Disease Rating Scale
LEA DERS HI P IN GENE THERA PY                                                    SEPT EMB E R 2021   |   33
AMT-130: a year of exceptional progress in clinical
                     development
                                                                                                   16 June 2021
                                                                                                   First Two Cohort 2
                                                                                                   Procedures
                            13 October 2020
19 June 2020                Enrollment of Next 2 Patients     05 April 2021                                          30 August 2021
First 2 Patients in         in Phase 1-2 Clinical Trial       Completion of Enrollment in First                      Third and Fourth
Phase 1-2 Clinical Trial                                      Cohort of Phase 1-2 Clinical Trial                     Cohort 2 Procedures

                                    2020                                                                   2021
Feb     Mar    Apr    May     Jun    Jul   Aug     Sep      Oct   Nov    Dec    Jan    Feb    Mar       Apr    May      Jun     Jul      Aug

  25 September 2020                                                                           1 June 2021
  DSMB Recommendation to Continue                                                             DSMB Recommendation
  Cohort 1 Enrollment in Phase 1-2 Study         8 February 2021                              on Initiating US Cohort 2
                                                 DSMB Recommendation to Continue
                                                 Cohort 1 Enrollment in Phase 1-2 Study

LEA DERS HI P IN GENE THERA PY                                                                                       SEPT EMB E R 2021    |    34
AMT-130: EU open-label study will augment phase 1-2 signal-
                  detection capacity

LEA DERS HI P IN GENE THERA PY                                    SEPT EMB E R 2021   |   35
AMT-130: preliminary data on first 4 randomized patients

 • Safety and tolerability                                                     Subject 1&2
                                                                                    1:1
 • Chemistry biomarkers from CSF and blood serum                              randomization
                                                                                 1 dosed
        • NfL – compared to baseline and control                                1 control
        • mHTT in CSF – compared to baseline and control
        • Markers for inflammation and immunogenicity
                                                                               Subject 3&4
 • Volumetric MRI Imaging                                                           1:1
        • Volume compared to baseline, control and natural history            randomization
                                                                                 1 dosed
 • Functional MRS Imaging                                                       1 control

        • Measurement of neuronal function compared to baseline and control

LEA DERS HI P IN GENE THERA PY                                                   SEPT EMB E R 2021   |   36
Expanding
 the Research
 Pipeline

A GL O BAL L EAD ER I N GEN E TH ERAP Y   MAY 2021   37
Spinocerebellar Ataxia Type 3 (SCA3)

Autosomal dominant disorder
• Spinocerebellar ataxia type 3 (SCA3) is the
  most common SCA
• Prevalence is 1-2:100,000 total population;
  ~7000 patients in the US and Europe
• Average onset 37 years

Symptoms
• Ataxia
• Dystonia/Rigidity
• Muscular atrophy
• Paralysis
• Median survival 20 years after diagnosis
                                                  Stop MJD Inc.

LEA DERS HI P IN GENE THERA PY                                    SEPT EMB E R 2021   |   38
SCA3: mutant ataxin-3 protein forms toxic aggregates
                              leading to neurodegeneration

                                                     CAG repeat
  ATXN3 mRNA

                                                    polyQ repeat                                        Cereb ellum
       Mutant                                                                            Brainstem
   ataxin-3 protein                                                                                  Spinal cord

                                                                                     SCA3              Healthy control

                             Toxic ataxin-3
                        protein aggregation

                                                                   Cereb ellum

                                Neurodegeneration
Eichler L et al. Am J Neuroradiol (2011)
                                                                                 Brain stem
LEA DERS HI P IN GENE THERA PY                                                                        SEPT EMB E R 2021   |   39
AMT-150: AAV5-microRNA against ATXN3 to lower toxic
                  ataxin-3 protein

                                                                         ITR                                               ITR

                                                                                                  miQURE®
                                                                                Pol II promoter                 polyA

                                                  CAG repeat
   ATXN3 mRNA

                                        miQURE®
                                                               miQURE®

                                                                               Reduction of toxic ataxin-3 protein
                                                                                                               polyQ repeat

                           Degradation of ATXN3 mRNA

LEA DERS HI P IN GENE THERA PY                                                                         SEPT EMB E R 2021    |    40
AMT-150: functional improvement in transgenic SCA3 mice
                                                                             after high dose cisterna magna delivery

                                                                                                                                                                      AMT-150   • Transgenic SCA3 mice with highest brainstem
                                                                                                                                                                                 transduction show partial SCA3 phenotype
                                                                                                                                                                                 improvement

                                                                                                                                                                                                                             Veh WT                   AMT-150
                                                                                                                                                                                                                             Veh Q84/Q84

                                                                                                                                                                                       Total Locomotor Activity
                                                                                                                                                                                                                  4000
                                                                                                                                                                                                                               8wk Injection (Cisterna Magna)
                                                                      Cerebellum                                                                           Brainstem
           Mutant ataxin-3 protein (%)

                                                                                               Mutant ataxin-3 protein (%)

                                                                                                                                                                                                                  3000
                                                               100                                                                                 100
                                         Relative to control

                                                                                                                             Relative to control

                                                               75
                                                                                         53%                                                       75
                                                                                                                                                                         65%                                      2000

                                                               50                                                                                  50
                                                                                                                                                                                                                  1000
                                                               25                                                                                  25

                                                                0                                                                                   0
                                                                                                                                                                                                                    0
                                                                                                                                                                                                                         7    10       15       20        25       30       35
                                                                        ol

                                                                                     3

                                                                                                                                                            ol

                                                                                                                                                                         3
                                                                                    N
                                                                        tr

                                                                                                                                                                        N
                                                                                                                                                            tr
                                                                                 TX
                                                                      on

                                                                                                                                                                     TX
                                                                                                                                                          on
                                                                               iA
                                                                     C

                                                                                                                                                                   iA
                                                                                                                                                         C
                                                                             -m

                                                                                                                                                                                                                                               weeks
                                                                                                                                                                 -m
                                                                          V5

                                                                                                                                                              V5
                                                                         A

                                                                                                                                                             A
                                                                        A

                                                                                                                                                            A

Martier R., et al., Mol Ther Methods Clin Dev . 2019 Oct 28;15:343-358.                                                                                                                                                  Univ ersity of Michigan Health Sy stem Department of Neurology

LEA DERS HI P IN GENE THERA PY                                                                                                                                                                                                                                       SEPT EMB E R 2021    |   41
Fabry disease: a lysosomal storage disease (LSD)

X-linked genetic disorder
• Deficiency of α-galactosidase A (GLA)
• Prevalence: 1:3,700 – 80,000 live births*
• Population: ~15,000 in US and Europe
Symptoms
• Fatigue and hearing loss
• Neuropathic pain
• Angiokeratomas
• Corneal opacity
• Cardiac disease
• Renal failure
• Stroke risk
* Spada, et al, Am. J. Hum. Gent. 2006:79, 31-40

LEA DERS HI P IN GENE THERA PY                                                 SEPT EMB E R 2021   |   42
AMT-191: delivers highly efficient one-time treatment

                            AAV5-GLA                                        Decreased Gb3 accumulation in treated
                          AAV5 encoding an                                          Fabry mouse kidney
                  α-galactosidase A (GLA) transgene                              cortical Gb3      medullary Gb3

                                                                    WT
                                                                    +
             AAV                                                  vehicle
            capsid

                                                    Expression
                                                     cassette     Fabry
                                                                    +
                                                                  vehicle

            ITR                                       ITR

                     Promoter     GLA       polyA
                                                                  Fabry
                                                                    +
                                                                 AAV5-GLA

LEA DERS HI P IN GENE THERA PY                                                                      SEPT EMB E R 2021   |   43
AMT-191: delivers highly efficient treatment in Fabry mice

                                  Vector DNA level                                                                                     GLA-activity in Liver tissue
                                                                                                                                                                                 • Dose-dependent and sustained GLA protein

                                                                           GLA-activity (nmol/h/mg)
                                in Fabry mouse liver                                                  1000000
genome copies/μg DNA

                       10 8                                                                            100000
                                                                                                                                                       >3000-fold
                                                                                                                                                                                   and activity levels in plasma and in liver
                       10 7
                       10 6
                                                                                                                  10000                                                          • GLA activity >3000-fold increase baseline
                       10 5                                                                                                 1000                                                   plasma levels
                       10 4
                       10 3
                                 
                                                           : below LLoQ
                                                           LLOQ
                                                                                                                                 100
                                                                                                                                                                                 • Good correlation of GLA protein and activity
                       10 2                                                                                                       10
                                                                                                                                                                                   in plasma
                                KO      Low   Mid   High                                                                                     WT    KO      Low      Mid   High

                              Vehicle     AAV5-GLA                                                                                       Vehicle           AAV5-GLA

                                                                                                                                   GLA activity in Fabry mouse plasma

                                                                                                                                                                                           levels in plasma (ng/mL)
                                                                                                                                       (12 weeks post-treatment)                                                      10000
                                 GLA-protein in Liver

                                                                                                                                                                                              Log10 GLA protein
                                                                                                      GLA activity (nmol/h/mL)

                                                                                                                                 100000            >3000-fold
                                                                                                                                                                                                                      1000
                                                                                                                                 10000

                                                                                                                                  1000
                                                                                                                                                                                                                       100
                                                                                                                                       100

                                                                                                                                       10
                                                                                                                                                                                                                        10
                                                                                                                                        1                                                                                 10     100   1000   10000    100000
                              Vehicle           AAV5-GLA                                                                                          KO    Low      Mid      High                                                   Log10 GLA activity
                                                                                                                                             Vehicle       AAV5-GLA                                                            in plasma (nmol/h/mL)

       LEA DERS HI P IN GENE THERA PY                                                                                                                                                                                                            SEPT EMB E R 2021   |   44
AMT-191: results in kidney and heart cross-correction and
                                                   phenotypical correction in Fabry mice

                                                                                                                                              Cross correction in kidney and heart:

                                                                     Lyso-Gb3 (pmol/mg protein)
                                      Gb3 levels in Kidney                                                LysoGb3 levels in Kidney
Gb3 (pmol/mg protein)

                                                                                                                                              • Higher GLA-activity levels
                           15000                                                                  14
                                                                                                  12

                           10000
                                                                                                  10
                                                                                                      8
                                                                                                                                              • Gb3 and LysoGb3 substrate reduction
                           5000
                                                                                                      4
                                                                                                                                              • Phenotypical correction: improvement
                                                                                                      2
                                                                                                                                                of pain perception
                              0                                                                       0
                                    WT       KO   Low   Mid   High                                        WT        KO   Low   Mid    High

                                    Vehicle        AAV5-GLA                                               Vehicle        AAV5-GLA
                                                                                                                                                                                     Nociception (hot-plate)

                                                                                                                                                      Time to reaction (sec)
                                        Gb3 levels in Heart                                                LysoGb3 levels in Heart                                                                     **
                                                                                                                                                                               120             **
                                                                     Gb3 (pmol/mg protein)

                                                                                                  6
   Gb3 (pmol/mg protein)

                           3000
                           2500
                                                                                                                                                                               100
                           2000                                                                   4

                           1500
                            500                                                                                                                                                 80
                                                                                                  2
                            250
                                                                                                                                                                                60
                              0                                                                   0                                                                                   WT      KO       Mid
                                   WT        KO   Low   Mid   High                                        WT        KO   Low    Mid    High

                                                                                                          Vehicle          AAV5-GLA                                                     Vehicle     AAV5-GLA
                                   Vehicle        AAV5-GLA

  LEA DERS HI P IN GENE THERA PY                                                                                                                                                                            SEPT EMB E R 2021   |   45
AMT-191: highly efficient increase of GLA in non-human
                                                 primates
                                                                                                      GLA activity plasma
                                     Liver DNA
                                                                                                       NHP GLA-treated                   • High and sustained plasma GLA

                                                                 GLA activity nmol/h/mL
                                                                                                                                           activity levels without anti-GLA IgG
DNA liver (copies/μg)

                                                                                          1000
                        10 8                           14 Days
                        10 7                           56 Days                            800                                              development
                        10 6
                        10 5
                                                                                          600
                                                                                                                                         • Increased GLA activity in liver and
                        10 4
                        10 3
                                                                                          400
                                                                                                                                           heart cross-correction
                                                                                          200
                        10 2
                                   NHP1        NHP2
                                                                                            0
                                      AAV5-GLA                                                   Wk-3Wk-1 D1    D4      D8 Wk2 Wk4 Wk8
                                                                                                                  time

                                                                                                                                                                                  Anti-GLA IgG
                                                                                                                   Heart
                                            Liver                                                                                                          150000                                                                1000
                                                                    (nmol/h/mg protein)
(nmol/h/mg protein)

                          600                                                                150                                                           100000
                                                                                                                                                            50000                                                                    800
                          500
                                                                       GLA-activity
   GLA-activity

                                                                                                                                              ECL Signal
                                                                                                                                                             6000

                                                                                                                                                                                                                    ECL Signal
                          400                                                                100                                                                                                                                     600

                          300                                                                                                                                4000
                                                                                                                                                                                                                                     400
                          200                                                                    50
                                                                                                                                                             2000
                          100                                                                                                                                                                                                        200

                               0                                                                 0                                                         LLOD 0                                                     LLOD
                                                                                                                                                                                                                          0
                                   Ctrl 1 Ctrl 2 NHP1 NHP2                                            Ctrl 1   Ctrl 2    NHP1   NHP2                                -20   Inj           20            40      60                       -20
                                                                                                                                                                                Days post treatment
                                    Controls      AAV5-GLA                                             Controls           AAV5-GLA

    LEA DERS HI P IN GENE THERA PY                                                                                                                                                              SEPT EMB E R 2021                |         46
Acquisition of Corlieve Therapeutics

    uniQure acquires Corlieve and advances its gene therapy to treat
    Temporal Lobe Epilepsy (TLE), a large indication with high unmet need

• Highly compelling and strategic transaction:
    • Expands uniQure’s pipeline of transformational gene therapies
    • Strengthen’s uniQure’s global leadership in miRNA silencing technology
    • Targets 1.3 million people with TLE, of which up to 800,000 are drug-resistant
    • Targets kainate receptors which play a critical role in TLE
    • Preclinical proof-of-concept demonstrating clear suppression of epileptic seizures
    • Clear development path with a rapid proof of concept
    • Diversifies our platform to include HEK293 mammalian cell manufacturing

 • Upfront cash payment of €46.3 million:
     • €43.7 million of development milestones through Phase 1/2
     • €160 million of milestones associated with Phase 3 development and regulatory approvals
LEA DERS HI P IN GENE THERA PY                                                             SEPT EMB E R 2021   |   47
Refractory temporal lobe epilepsy (TLE)

    •   TLE is the most common type of focal epilepsy
    •   TLE is associated with damage to the temporal
        lobe and hyperexcitability of the hippocampus
    •   It’s often caused by brain injury, tumors or a
        prolonged febrile seizure
    •   TLE affects approximately 1.3 million people in the
        U.S. and Europe; ~400,000 patients are
        inadequately treated
    •   Refractory TLE patients have a poor quality of life
        and a reduced lifespan
    •   The standard of care is lobectomy or laser tissue
        ablation but only 1-2% of eligible patients
        undergo surgery

LEA DERS HI P IN GENE THERA PY                                SEPT EMB E R 2021   |   48
Kainate receptors are implicated in TLE

                                                                          Epileptic Condition
                                                                CA1
                                                                                  Mossy fibers
      •    Kainate receptors are excitatory glutamate    Schaffer                                       AMPA
                                                        collaterals CA3                               receptors
           receptors that are epileptogenic and                                         Seizures
           believed to be aberrantly expressed in                                      rMF

           the hippocampus of refractory TLE                                 Dentate gyrus
                                                                                      +ectopic KA           Perforant
           patients                                                                    receptors            pathway

      •    They drive seizures through recurrent                            15
           excitation                                                                      *

      •    Kainate receptor knock-out mice are                              10

           resistant to epilepsy in a pilocarpine TLE
                                                                              5
           model
                                                                              0
                                                                                    WT KainateR KO
                                                                                   Peret et al 2014
LEA DERS HI P IN GENE THERA PY                                                                     SEPT EMB E R 2021    |   49
AMT-260 reduces seizures in preclinical models of TLE
                                                                                         40

                                                                      # Seizure / day
                                                                                         30

  •    AMT-260 is an AAV gene therapy that    Mouse                                      20

       delivers an engineered miRNA           TLE model                                  10
                                                                                                                                                                                           *                                                        *
       targeting kainate receptors                                                           0
  •    AMT-260 & AMT-261* dramatically                                                                          Control                                               AMT260 AMT261

                                                                                             + Control vector
       reduce seizures in a pilocarpine                       100

       seizure rodent model
                                                               80

                                                               60

                                                               40

                                                               20

  •
                                                                0

       AMT-260 reduces seizures in human                      -2 0

                                                              -4 0

                                                              -6 0

       brain slices from patients with                        -8 0

                                                             -1 0 0
                                                                                                                                                                                                                                                                             20 µV
                                              Resected       -1 2 0
                                                                 3 3 2 6 9 03 3 2 7 0 03 3 2 7 1 03 3 2 7 2 03 3 2 7 3 03 3 2 7 4 03 3 2 7 5 03 3 2 7 6 03 3 2 7 7 03 3 2 7 8 03 3 2 7 9 03 3 2 8 0 03 3 2 8 1 03 3 2 8 2 03 3 2 8 3 03 3 2 8 4 03 3 2 8 5 03 3 2 8 6 03 3 2 8 7 03 3 2 8 8 03 3 2 8 9 03 3 2 9 0 03 3 2 9 1 0

       refractory TLE                         human                                           + AMT260
                                                             150

                                              brain slices   100

                                                              50

                                                               0

                                                             -5 0

                                                             -1 0 0

                                                             -1 5 0
                                                                      2 0 3 8 0 02 0 3 8 1 02 0 3 8 2 02 0 3 8 3 02 0 3 8 4 02 0 3 8 5 02 0 3 8 6 02 0 3 8 7 02 0 3 8 8 02 0 3 8 9 02 0 3 9 0 02 0 3 9 1 02 0 3 9 2 02 0 3 9 3 02 0 3 9 4 02 0 3 9 5 02 0 3 9 6 02 0 3 9 7 02 0 3 9 8 02 0 3 9 9 02 0 4 0 0 02 0 4 0 1 0

*variant of AMT-260
LEA DERS HI P IN GENE THERA PY                                                                                                                                                                                                                 SEPT EMB E R 2021                                                                 |   50
LEA DERS HI P IN GENE THERA PY   SEPT EMB E R 2021   |   51
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