JBC Papers in Press. Published on January 28, 2020 as Manuscript RA119.011440

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JBC Papers in Press. Published on January 28, 2020 as Manuscript RA119.011440
JBC Papers in Press. Published on January 28, 2020 as Manuscript RA119.011440
     The latest version is at https://www.jbc.org/cgi/doi/10.1074/jbc.RA119.011440

 Antisense oligonucleotides targeting Notch2 ameliorate the osteopenic phenotype in a mouse model of
                                       Hajdu Cheney syndrome

Ernesto Canalis1,2,3*, Tamar R. Grossman4, Michele Carrer4, Lauren Schilling3 and Jungeun Yu1,3

    Departments of Orthopaedic Surgery1 and Medicine2, and the UConn Musculoskeletal Institute3,
     UConn Health, Farmington, CT, 06030 and Ionis Pharmaceuticals, Inc.4, Carlsbad, CA 92010

                                  Running title: ASOs and Hajdu Cheney

*To whom correspondence should be addressed: Ernesto Canalis, M.D.: Departments of Orthopaedic
Surgery and Medicine, UConn Health, 263 Farmington Avenue, Farmington, CT 06030-4037;
Email: canalis@uchc.edu; Telephone: (860) 679-7978; Fax: (860) 679-1474

Keywords: Antisense oligonucleotides; Hajdu Cheney Syndrome; Notch receptor; bone; bone
resorption; osteoclast; osteoclastogenesis; cell fate; cell signaling; osteoporosis

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ABSTRACT                                                   mice. Bone marrow–derived macrophage
         Notch receptors play critical roles in cell       cultures from the Notch2tm1.1Ecan mice displayed
fate decisions and in the regulation of skeletal           enhanced osteoclastogenesis, which was
development and bone remodeling. Gain-of-                  suppressed by Notch2 ASOs. In conclusion,
function NOTCH2 mutations can cause Hajdu                  Notch2tm1.1Ecan mice exhibit cancellous bone
Cheney syndrome (HCS), an untreatable disease              osteopenia that can be ameliorated by systemic
characterized by osteoporosis and fractures,               administration of Notch2 ASOs.
craniofacial developmental abnormalities, and
acro-osteolysis. We have previously created a
mouse model harboring a point 6955C>T                               Notch receptors are four single-pass
mutation in the Notch2 locus upstream of the               transmembrane proteins that play a critical
PEST domain and termed this model                          function in cell fate determination (1,2). Notch1,
Notch2tm1.1Ecan. Heterozygous Notch2tm1.1Ecan              2 and 3 and low levels of Notch4 transcripts are
mutant mice exhibit severe cancellous and                  detected in bone cells, where they play a key role
cortical bone osteopenia due to increased bone             in osteoblast and osteoclast differentiation and
resorption. In the present work, we demonstrate            function (3). Notch receptors are activated
that the subcutaneous administration of Notch2             following interactions with ligands of the Jagged
antisense oligonucleotides (ASO) down-                     and Delta-like families, and JAGGED1 is the
regulates Notch2 and the Notch target genes                prevalent ligand expressed by skeletal cells
Hes-related family BHLH transcription factor               (3,4). Interactions of NOTCH with its ligands
with YRPW motif 1 (Hey1), Hey2, and HeyL in                lead to the proteolytic cleavage of the NOTCH
skeletal tissue from Notch2tm1.1Ecan mice. Results         protein and to the release of the NOTCH
of microcomputed tomography experiments                    intracellular domain (NICD) (5,6). The NICD is
indicated that the administration of Notch2                translocated into the nucleus where it forms a
ASOs ameliorates the cancellous osteopenia of              complex with recombination signal-binding
Notch2tm1.1Ecan       mice,        and        bone         protein for Ig of κ (RBPJκ) and mastermind
histomorphometry analysis revealed decreased               (MAML) to induce the transcription of target
osteoclast numbers in Notch2 ASO–treated                   genes including those encoding Hairy Enhancer
Notch2tm1.1Ecan mice. Notch2 ASOs decreased the            of Split (HES)1, 5 and 7 and HES-related with
induction of mRNA levels of TNF superfamily                YRPW motif (HEY)1, 2 and L (7-9).
member       11     (Tnfsf11,    encoding        the                Although activation of NOTCH1, 2 and
osteoclastogenic protein RANKL) in cultured                3 in the skeleton results in osteopenia, the
osteoblasts and osteocytes from Notch2tm1.1Ecan            mechanisms responsible for the bone loss are

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ASOs and Hajdu Cheney

distinct (10-14).        NOTCH2 has unique               opportunity to correct the mechanisms
properties and impairs osteoblast maturation and         responsible for the disease.
induces osteoclastogenesis by acting directly on                  Approaches to downregulate Notch
cells of the myeloid lineage and by inducing             signaling include the use of biochemical
receptor activator of nuclear factor κB ligand           inhibitors of Notch activation, thapsigargin,
(RANKL) in cells of the osteoblast lineage               antibodies to nicastrin, which forms part of the
(10,12,15).                                              γ-secretase complex, or to Notch receptors or
         Hajdu Cheney Syndrome (HCS) is a                their ligands, and stapled peptides that prevent
dominant inherited disease characterized by              the assembly of a NICD/RBPJκ/MAML ternary
craniofacial developmental abnormalities,                complex (28-32).         A limitation of these
acroosteolysis, generalized osteoporosis with            approaches is that either they are not specific
fractures and neurological complications (16-            inhibitors of Notch signaling or they prevent the
18). HCS is associated with point mutations in,          indiscriminate activation of all Notch receptors,
or short deletions of, exon 34 of NOTCH2 that            leading to a generalized Notch activation knock-
lead to the creation of a stop codon upstream of         down and side effects. Anti-Notch NRR
the proline (P), glutamic acid (E), serine (S) and       antibodies have been effective at preventing the
threonine (T) (PEST) domain (19-23). The                 activation of specific Notch receptors (33-35).

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PEST domain is required for the ubiquitination           However, the pronounced downregulation of
and degradation of NOTCH2.                  As a         Notch activation may result in gastrointestinal
consequence, the mutations result in the                 toxicity.
translation of a stable truncated protein product                 Antisense oligonucleotides (ASOs) are
and a gain-of-NOTCH2 function. Iliac crest               single-stranded synthetic nucleic acids that bind
bone biopsies obtained from subjects afflicted by        target mRNA by Watson-Crick pairing resulting
HCS have demonstrated the presence of                    in mRNA degradation by RNase H (36,37). The
osteopenia, increased bone resorption and                administration of ASOs has emerged as a novel
trabecularization of cortical bone (24-26).              therapeutic approach to downregulate wild type
         To gain an understanding of the HCS             and mutant transcripts, and has been successful
skeletal phenotype and the mechanisms                    in the silencing of mutant genes in the central
involved, we introduced a Notch2 mutation                and peripheral nervous system, retina and liver
(6955C>T) in the mouse genome to reproduce a             (38-45). ASOs have been used to downregulate
mutation (6949C>T) found in a subject with               specific genes in the skeleton, although
HCS (10,20,22). The mutation creates a stop              information about their possible use as a
codon in exon 34 leading to the translation of a         therapeutic intervention in genetic disorders of
truncated NOTCH2 protein of 2318 amino acids             the skeleton is limited (46,47).
(10). The mouse line, termed Notch2tm1.1Ecan,                     The purpose of the present work was to
exhibits NOTCH2 gain-of-function and                     answer the question as to whether the phenotype
homozygous        mice     display    craniofacial       of the Notch2tm1.1Ecan mouse model could be
developmental abnormalities and newborn                  ameliorated or reversed by downregulating
lethality. Heterozygous Notch2tm1.1Ecan mice             Notch2 expression with Notch2-specific ASOs.
have cancellous and cortical bone osteopenia             To this end, heterozygous Notch2tm1.1Ecan and
due to enhanced bone resorption. This is                 control littermate mice were treated with second
secondary to an increase in the number of                generation phosphorothioate modified ASOs
osteoclasts due to enhanced expression of                targeting Notch2 and characterized by bone
RANKL by cells of the osteoblast lineage as well         microarchitectural analysis. The direct effects of
as due to direct effects of NOTCH2 on                    the Notch2 ASO on osteoblast, osteocyte and
osteoclastogenesis (10,15). The discovery of the         osteoclast cultures from control and
mechanisms responsible for the bone loss                 experimental mice also were tested.
provided clues to offer improved treatments to
individuals with HCS, such as the use of the             Results
RANKL antibody denosumab (27). However,                  Effect of Notch2 ASOs on Notch2 Expression
none of the available interventions offers the           and Signaling In Vivo

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ASOs and Hajdu Cheney

        In initial experiments, we tested whether        administration of mouse Notch2 ASOs, control
mouse Notch2 ASOs downregulated Notch2                   and Notch2tm1.1Ecan experimental mice appeared
mRNA in vivo in tissues where Notch2 is                  healthy although a 6% decrease in weight was
expressed and is known to have a function                noted in wild type mice treated with Notch2
(10,48-52). The subcutaneous administration of           ASOs when compared to control ASOs.
ASOs targeting murine Notch2 to C57BL/6 wild             Femoral length was not affected by Notch2
type mice at a dose of 50 mg/Kg caused a ~40 to          ASOs in either control or Notch2tm1.1Ecan mice
50% downregulation of Notch2 mRNA 40 h later             (Figure 3).
in the spleen, kidney and femur, and an 80%                       Validating previous observations, µCT
reduction of Notch2 transcripts in the liver             of the distal femur revealed that 2 month old
(Figure 1). In a subsequent experiment, Notch2           Notch2tm1.1Ecan mutant male mice had a
ASOs, administered subcutaneously to wild type           significant decrease in trabecular bone
C57BL/6 mice at 50 mg/Kg, downregulated                  volume/total volume (BV/TV) associated with
Notch2 mRNA in femur by ~40% 48 to 96 h after            reduced connectivity and higher structure model
the administration of the ASO.                           index (SMI) (10). Trabecular number and
        There was evidence of enhanced Notch             thickness were both reduced in Notch2tm1.1Ecan
signaling in skeletal tissue from Notch2tm1.1Ecan        mice, contributing to the decrease in BV/TV

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mice, and the Notch target genes Hey1, Hey2 and          (Figure 4). The subcutaneous administration of
HeyL were induced in bone extracts from mutant           mouse Notch2 ASOs once a week at 50 mg/Kg
mice in relationship to control littermates              for 4 weeks did not change microarchitectural
(Figure 2). The subcutaneous administration of           parameters of femoral bone in wild type mice. In
mouse Notch2 ASOs decreased the expression               contrast, Notch2tm1.1Ecan mice receiving Notch2
of Notch2 and Notch26955C>T mutant mRNA.                 ASOs had a BV/TV that was 30% greater than
Notch2 ASOs also decreased the Notch target              in mutant mice receiving control ASOs. As a
genes Hey1 and Hey2 in bone extracts from wild           consequence BV/TV in Notch2tm1.1Ecan mice was
type mice and Hey1, Hey2 and HeyL in extracts            reduced by 28% when compared to control wild
from Notch2tm1.1Ecan mice demonstrating a                type mice, whereas Notch2tm1.1Ecan treated with
suppressive effect of Notch2 ASOs on Notch               control ASOs exhibited a 45% reduction in
signaling in the skeleton. As a result, the mRNA         BV/TV compared to wild type littermate
levels of Hey1, Hey2 and HeyL in tibiae from             controls (Figure 4). The partial restoration of
Notch2tm1.1Ecan mice treated with Notch2 ASOs            BV/TV by Notch2 ASOs was associated with a
approached the levels found in tibiae from wild          significant increase in trabecular number.
type mice treated with control ASOs. A modest            Notch2tm1.1Ecan mice presented with cortical
induction of Tnfsf11 (encoding RANKL, p >                osteopenia and cortical bone was thin and bone
0.05) was observed in tibiae from Notch2tm1.1Ecan        area and cortical thickness were reduced (Table
mice and this was reduced by Notch2 ASOs.                1). The cortical osteopenia was not affected by
                                                         Notch2 ASOs, so that the cortical bone area and
Effect of Notch2 ASOs on General                         thickness in Notch2tm1.1Ecan mice treated with
Characteristics, Femoral Microarchitecture               Notch2 ASOs were not different from values
and Histomorphometry of Notch2tm1.1Ecan Mice             obtained in mutant mice treated with control
         Heterozygous Notch2tm1.1Ecan mutant             ASOs.
male mice were compared to wild type sex-                         Cancellous bone histomorphometric
matched littermate mice in a C57BL/6 genetic             analysis revealed that osteoclast number was
background because the skeletal phenotype was            increased in Notch2tm1.1Ecan mice; Notch2 ASOs
similar in both sexes, and the homozygous                did not change osteoclast number in wild type
mutation of Notch2tm1.1Ecan results in perinatal         mice, but significantly reduced osteoclast
lethality.       Confirming     prior     results,       number in Notch2tm1.1Ecan mice, so that osteoclast
Notch2tm1.1Ecan heterozygous mice had ~10%               number was not different between Notch2tm1.1Ecan
lesser weight than littermate controls, and their        mice treated with Notch2 ASOs and control
femoral length was slightly shorter than that of         littermate wild type mice (Table 2). Confirming
controls (Figure 3) (10).        Following the           prior observations, osteoblast number was not

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ASOs and Hajdu Cheney

different between control and Notch2tm1.1Ecan             was not changed in Notch2tm1.1Ecan osteoblasts
mice. Accordingly, dynamic parameters of bone             (10). Notch2 ASOs decreased Notch2 mRNA in
formation were not different between wild type            wild type and mutant cells, and Notch29655C>T
and mutant mice and were not affected by                  mRNA in osteoblasts from Notch2tm1.1Ecan mice.
Notch2 ASOs. In accordance with the cellular              In addition, Notch2 ASOs decreased Hey1, Hey2
phenotype of Notch2tm1.1Ecan mice, fasting serum          and Tnfsf11 mRNA in cells from Notch2tm1.1Ecan
levels of carboxy-terminal collagen crosslinks            mice, without an effect on Bglap expression
(CTX) were increased from (means ± SD; n = 5              (Figure 6).
to 6) control 34.6 ± 2.4 to 49.2 ± 8.9 ng/ml (p <                  Notch26955C>T mRNA was present in
0.05) in Notch2tm1.1Ecan mice treated with control        osteocyte-enriched cultures from Notch2tm1.1Ecan
ASOs. Notch2 ASOs reduced the serum levels                mice and not in control cultures, and Hey2 and
of CTX in both wild type mice to 24.1 ± 9.7               Tnfsf11 were significantly increased in
ng/ml (p < 0.052) and Notch2tm1.1Ecan mice to             Notch2tm1.1Ecan cells (Figure 7). Notch2 ASOs
23.2 ± 3.9 ng/ml (p < 0.05) demonstrating a               suppressed Notch2 mRNA in wild type and
normalization     of     bone     resorption    in        mutant cells and Notch26955C>T mRNA levels in
experimental mice.                                        cells from Notch2tm1.1Ecan mice, and suppressed
                                                          Hey2 and Tnfsf11 in Notch2tm1.1Ecan cells to levels

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Effect of Notch2 ASOs on Notch2 Expression                that were similar to those found in wild type cells
and Signaling in Osteoblast and Osteocyte Cell            treated with control ASOs.
Cultures
         Mouse Notch2 ASOs added to the                   Effect of Notch2 ASOs on Notch2 Expression
culture medium of osteoblast-enriched cells               and Activity in BMM Cultures and Osteoclast
from wild type C57BL/6 mice at 1 to 20 µM                 Formation
decreased Notch2 mRNA by ~40 to ~80% 72 h                          Notch2 ASOs were added to either
after ASO addition without evidence of cellular           BMM cultures at the initiation of the culture
toxicity or changes in cell replication (Figure 5).       period or following the addition of RANKL for
The effect of the Notch2 ASO was specific for             2 days to determine their effect in cells of the
Notch2 mRNA since, at a concentration as high             myeloid lineage and in osteoclast precursors.
as 20 µM, it did not decrease the expression of           Mouse Notch2 ASOs at 1 and 5µM suppressed
Notch1, 3 or 4 mRNA.               The NOTCH2             Notch2 mRNA levels in BMMs from wild type
intracellular domain (N2ICD), representative of           C57BL/6 mice by 85 to 95% and in osteoclast
NOTCH2 cleavage and signal activation, was                precursors by 70 to 85% without evidence of
increased in Notch2tm1.1Ecan osteoblasts and the          cellular toxicity and without altering cell
truncated form of NOTCH2, lacking the PEST                proliferation (Figure 8). Confirming results in
domain (N2ICD∆PEST) was detected only in                  osteoblast cultures, the NOTCH2 intracellular
Notch2tm1.1Ecan cells. Therefore, the total levels        domain (N2ICD) was increased in Notch2tm1.1Ecan
of N2ICD, intact and truncated, were ~2-fold              osteoclasts and the truncated form of NOTCH2,
greater in Notch2tm1.1Ecan cells than in control          lacking the PEST domain (N2ICD∆PEST) was
cells (Figure 5). Notch2 ASOs decreased the               detected only in Notch2tm1.1Ecan cells.
total levels of N2ICD in wild type and                    Consequently, the total levels of N2ICD, intact
Notch2tm1.1Ecan cells demonstrating a suppression         and truncated, were ~2-fold greater in
of NOTCH2 activation.                Notch26955C>T        Notch2tm1.1Ecan cells than in control cells (Figure
transcripts were present in cells from                    8). Notch2 ASOs decreased the total levels of
Notch2tm1.1Ecan mutant mice but not in control            N2ICD in wild type and Notch2tm1.1Ecan cells
cultures, and Hey1 and Hey2 transcripts were              demonstrating a suppression of NOTCH2
increased     in     Notch2tm1.1Ecan   osteoblasts        activation.
confirming that Notch signaling was activated                      There was a significant increase in
(Figure 6).        In accordance with prior               osteoclast formation in BMMs from
observations, tumor necrosis factor superfamily           Notch2tm1.1Ecan mice cultured in the presence of
member 11 (Tnfsf11), encoding RANKL, was                  M-CSF and RANKL (Figure 9). The increased
induced whereas Bglap, encoding osteocalcin,              osteoclastogenesis was prevented by the

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ASOs and Hajdu Cheney

addition of Notch2 ASOs to BMM cultures at 1              of RANKL by cells of the osteoblast lineage and
µM so that the osteoclastogenic potential of              by inducing the differentiation of cells of the
Notch2tm1.1Ecan cells cultured with Notch2 ASOs           myeloid lineage toward mature osteoclasts (15).
was no longer different from that of control cells.       Notch2 ASOs decreased both effects in vitro and
The decrease in osteoclastogenesis by Notch2              decreased serum levels of CTX, a marker of
ASOs in Notch2tm1.1Ecan cells was associated with         bone resorption, so that CTX levels in
a concomitant decrease in Notch2 wild type and            Notch2tm1.1Ecan ASO-treated mice were not
Notch26955C>T mutant transcripts.                         different from those of wild type mice. These
                                                          effects would explain the amelioration of the
Discussion                                                osteopenia observed in Notch2tm1.1Ecan mice.
         Findings from the present work confirm                    Notch2 ASOs downregulated Notch2
that a mouse model replicating a mutation found           and Notch26955C>T transcripts and decreased the
in HCS displays femoral cancellous and cortical           enhanced        Notch      signaling     found    in
bone osteopenia. The osteopenic phenotype is              Notch2tm1.1Ecan cells as well as in bone extracts
manifested early in life in mice of both sexes;           without an effect on basal levels of Notch
and in the present study, we elected to treat 1           activation. Only Notch2tm1.1Ecan mutant cells
month old male mice with Notch2 ASOs in an                synthesized the truncated form of the N2ICD
                                                          (N2ICD∆PEST) and the intact N2ICD. The

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attempt to ameliorate the osteopenic femoral
phenotype of Notch2tm1.1Ecan mice (10). Because           summation of the intact and truncated forms of
only male mice were treated one needs to be               N2ICD resulted in a ~2-fold greater expression
cautious and not extrapolate the results to female        of N2ICD in Notch2tm1.1Ecan mutants than in
mice. Phenotypic alterations of experimental              control cells, and this was suppressed by Notch2
and control mice were assessed by µCT, and                ASOs confirming the downregulation of Notch2
analyses required the ex vivo exam of bone                signaling. The N2ICD∆PEST is more stable than
following the sacrifice of mice. Consequently,            wild type N2ICD since it is resistant to ubiquitin-
the same animal could not be analyzed before              mediated degradation, explaining the gain-of-
and after the administration of Notch2 ASOs.              NOTCH2 function and the induction of Notch
Another limitation of the work is the fact that all       target     genes      in     Notch2tm1.1Ecan   cells.
                                                                  tm1.1Ecan
the analyses were performed in femoral bone               Notch2            mice do not exhibit an increase in
since the osteopenia of Notch2tm1.1Ecan mice was          osteoblast number or a bone-forming response to
established at this skeletal site (10). Whereas           the increase in bone resorption, indicating a
Notch2 ASOs downregulated Notch2 wild type                possible          negative       regulation       of
and mutant transcripts in femoral bone, it was            osteoblastogenesis or osteoblast function by the
not determined whether the same effect occurs at          Notch2 mutation. However, in the present
other skeletal, possibly less vascularized, sites.        studies we confirm that osteoblast gene markers,
The Notch2 ASO utilized is specific to Notch2             such as Bglap (osteocalcin), are not affected in
so that the results obtained should not be                cells from Notch2tm1.1Ecan mice. The inactivation
attributed to the downregulation of other Notch           of Notch2 in cells of the osteoblastic lineage
receptors.                                                causes an increase in the osteogenic potential of
         The phenotype of the Notch2tm1.1Ecan             these cells suggesting an inhibitory role of Notch
mutant mouse recapitulates aspects of HCS                 signaling in osteoblastogenesis (54-56).
including osteopenia, short limbs and in the                       Although approaches to downregulate
homozygous state craniofacial abnormalities,              Notch signaling are various, they are often not
including micrognathia, and early-lethality               specific to this signaling pathway or to a specific
(10,15), and E. Canalis, unpublished                      Notch receptor. A recent alternative has been the
observations). However, neither Notch2tm1.1Ecan           use of antibodies to the negative regulatory
nor an alternate murine model of HCS manifest             region (NRR) of specific Notch receptors that
acroosteolysis (53). In the present work, we              prevent the exposure of the NRR to the γ-
confirm that Notch2 has unique actions on                 secretase complex and thus the activation of
trabecular bone physiology and induces                    Notch (33-35). Recently, we demonstrated that
osteoclastogenesis by increasing the expression           anti-Notch2 NRR antibodies reverse the skeletal

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ASOs and Hajdu Cheney

phenotype of Notch2tm1.1Ecan mice and anti-                        ASOs targeting Notch2 mRNA were
Notch3 NRR antibodies reverse the skeletal               designed in silico by scanning through the
phenotype of Notch3tm1.1Ecan mice, a model of            sequence of murine Notch2 pre-mRNA. The
Lateral Meningocele Syndrome (34,35).                    entire Notch2 pre-mRNA sequence was covered
Although anti-Notch NRR antibodies are                   for     potential     16-mer     oligonucleotides
specific, the significant downregulation of the          complementary to the pre-mRNA. Sequence
Notch receptor throughout the organism may               motifs that were intrinsically problematic
lead to potential side effects, such as                  because of unfavorable hybridization properties,
gastrointestinal toxicity. In the present studies,       such as polyG stretches, or potential toxicity due
we demonstrate that downregulation of Notch              to immunogenic responses, were avoided.
expression by specific Notch ASOs is a suitable          Notch2 ASOs were tested for activity in vitro for
alternative to decrease Notch activation in              downregulation of Notch2 mRNA in HEPA 1-6
conditions of Notch gain-of-function. Although           cells at Ionis Pharmaceuticals (Carlsbad, CA),
the effect of Notch2 ASOs was less pronounced            and 14 ASOs targeting Notch2 mRNA were
than the one reported with anti-Notch2 NRR               screened for activity and toxicity in vivo at the
antibodies, Notch2 ASOs were effective at                Korea Institute of Toxicology (KIT, Daejeon,
ameliorating the skeletal phenotype of                   Korea). To this end, 7-week-old BALB/c male
Notch2tm1.1Ecan mice and appeared to be well

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                                                         mice were administered ASOs at a dose of 50
tolerated by this experimental model of HCS.             mg/Kg once a week by subcutaneous injection
         Although attempts have been made to             for a total of 3.5 weeks (4 doses). Body weights
transport ASOs to bone, complex delivery                 were measured weekly and mice were
systems were necessary and the technology has            euthanized 48 hours after the last dose of ASO.
not been applied to the correction of gene               Liver, kidney and spleen were weighed,
mutations in the skeleton (57). In the present           normalized to body weight and compared to
studies, we used a practical systemic approach to        organs from control mice. Blood was obtained
downregulate Notch2 in skeletal and non-                 by cardiac puncture, and plasma was collected
skeletal tissue. We demonstrate that a second            for      the      measurement       of     alanine
generation phosphorothioate modified murine              aminotransferase, aspartate aminotransferase,
Notch2 ASO downregulated Notch2 in tissues               total bilirubin, albumin and blood urea nitrogen.
where the gene is expressed and has a function,          Total RNA was extracted from liver samples to
including bone. The decrease in Notch2 in a              determine Notch2 mRNA levels corrected for
mouse model of Notch2 gain-of-function was               cyclophilin A expression.         Based on the
associated with a concomitant decrease in Notch          information obtained, ASOs found to
target gene expression in skeletal cells                 downregulate Notch2 liver mRNA by more than
documenting a tempering effect on Notch                  75% compared to a control mismatched ASO
activation. As a consequence, a recovery of              without toxicity in vivo were selected.
bone mass was observed. Although this was not            Procedures performed at KIT were approved by
complete, a significant effect on BV/TV was              the KIT animal care and use committee. For the
achieved with amelioration of the Notch2tm1.1Ecan        present studies, mouse Notch2 ASO Ionis
skeletal phenotype.                                      977472 of sequence GTTATATAATCTTCCA
         In    conclusion,      Notch2      ASOs         and control mismatched ASO Ionis 549144 of
downregulate Notch2 expression and signal                sequence GGCCAATACGCCGTCA were
activation, and decrease RANKL and                       selected.
osteoclastogenesis in a model of HCS, and
consequently      ameliorate     its   osteopenic        Notch2tm1.1Ecan Mutant Mice
phenotype. The downregulation of NOTCH2                           A mouse model of HCS, termed
may offer a potential therapeutic opportunity for        Notch2tm1.1Ecan,    harboring     a    6955C>T
subjects with HCS in the future.                         substitution in exon 34 of Notch2 was previously
                                                         reported and validated (10). Notch2tm1.1Ecan mice
Experimental procedures                                  were backcrossed into a C57BL/6J background
Notch2 Antisense Oligonucleotides                        for 8 or more generations and genotyping was

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ASOs and Hajdu Cheney

conducted in tail DNA extracts by polymerase              hydroxyapatite (58,59). For analysis of femoral
chain reaction (PCR) using forward primer                 cortical bone, contours were iterated across 100
Nch2Lox gtF 5’–CCCTTCTCTCTGTGCGG                          slices along the cortical shell of the femoral
TAG-3’ and reverse primer Nch2Lox gtR 5’–                 midshaft, excluding the marrow cavity.
CTCAGAGCCAAAGCC TCACTG-3’. In the                         Analysis of bone volume/total volume, porosity,
present study, one month old mice heterozygous            cortical thickness, total cross sectional and
for the Notch26955C>T allele and control mice             cortical bone area, periosteal perimeter,
were obtained by crossing heterozygous mutants            endosteal perimeter and material density were
with wild type mice to assess the impact of               performed using a Gaussian filter (σ = 0.8,
Notch2 ASOs on the Notch2tm1.1Ecan skeletal               support = 1), and a threshold of 400 permil
phenotype. One month old male Notch2tm1.1Ecan             equivalent to 704.7 mg/cm3 hydroxyapatite.
heterozygous mutant and control sex-matched
littermate mice were treated with Notch2 ASO              Bone Histomorphometric Analysis
(Ionis 977472) or control ASO (Ionis 549144)                      Static           cancellous          bone
suspended in phosphate buffered saline, and               histomorphometry was carried out on
administered subcutaneously at a dose of 50               experimental and control mice. Five micron
mg/Kg once a week for 4 consecutive weeks.                longitudinal sections of undecalcified femurs

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Mice were euthanized at 2 months of age.                  embedded in methyl methacrylate were cut on a
Studies were approved by the Institutional                microtome (Microm, Richards-Allan Scientific,
Animal Care and Use Committee of UConn                    Kalamazoo, MI), and stained with 0.1%
Health.                                                   toluidine blue. Static and dynamic parameters of
                                                          bone formation and resorption were measured in
Microcomputed Tomography (µCT)                            a defined area between 360 µm and 2160 µm
         Bone microarchitecture of femurs from            from the growth plate, using an OsteoMeasure
experimental and control mice was determined              morphometry system (OsteoMetrics, Atlanta,
using a microcomputed tomography instrument               GA). Stained sections were used to measure
(µCT 40; Scanco Medical AG, Bassersdorf,                  osteoblast and osteoclast number and eroded
Switzerland), which was calibrated periodically           surface. Mineralizing surface per bone surface
using a phantom provided by the manufacturer              and mineral apposition rate were measured on
(58,59). Femurs were scanned in 70% ethanol at            unstained sections visualized under UV light and
high resolution, energy level of 55 kVp, intensity        a triple diamidino-2-phenylindole/fluorescein/
of 145 µA and integration time of 200 ms. A               Texas red set long pass filter, and bone formation
total of 100 slices at midshaft and 160 slices at         rate was calculated. The terminology and units
the distal metaphysis were acquired at an                 used are those recommended by the
isotropic voxel size of 216 µm3 and a slice               Histomorphometry Nomenclature Committee of
thickness of 6 µm, and chosen for analysis.               the American Society for Bone and Mineral
Trabecular bone volume fraction and                       Research (60,61).
microarchitecture were evaluated starting
approximately 1.0 mm proximal from the                    Osteoblast-enriched Cell Cultures
femoral condyles. Contours were manually                           The parietal bones of 3 to 5 day old
drawn a few voxels away from the endocortical             control and Notch2tm1.1Ecan mutant mice were
boundary every 10 slices to define the region of          exposed to Liberase TL 1.2 U/ml (Sigma-
interest for analysis. The remaining slice                Aldrich St. Louis, MO) for 20 min at 37°C and
contours     were       iterated     automatically.       cells extracted in 5 consecutive reactions (62).
Trabecular regions were assessed for total                Cells from the last 3 digestions were pooled and
volume, bone volume, bone volume fraction                 seeded at a density of 10 x 104 cells/cm2, as
(bone volume/total volume), trabecular                    described (63). Osteoblast-enriched cells were
thickness, trabecular number, trabecular                  cultured in Dulbecco’s modified Eagle’s
separation, connectivity density and SMI, using           medium (DMEM) supplemented with non-
a Gaussian filter (σ = 0.8), and a threshold of 240       essential amino acids (both from Life
permil     equivalent      to    355.5     mg/cm3         Technologies, Grand Island, NY) and 10% heat-

                                                      7
ASOs and Hajdu Cheney

inactivated fetal bovine serum (FBS; Atlanta                   For osteoclast formation, cells were
Biologicals, Norcross, GA) in a humidified 5%           collected following treatment with 0.05%
CO2 incubator at 37°C. Confluent osteoblast-            trypsin/EDTA and seeded at a density of 4.7 x
enriched cells were exposed to DMEM                     104 cells/cm2 on tissue culture plates in the
supplemented with 10% heat-inactivated FBS,             presence of M-CSF at 30 ng/ml and murine
100 µg/ml ascorbic acid and 5 mM β-                     RANKL at 10 ng/ml until the formation of
glycerophosphate (both from Sigma-Aldrich) in           multinucleated         tartrate-resistant     acid
the presence of Notch2 ASO or control ASO at            phosphatase (TRAP)-positive cells. RANKL
various doses as indicated in figure legends.           cDNA and expression vector were obtained from
                                                        M. Glogauer (Toronto, ON, Canada), and
Osteocyte-enriched Cultures                             glutathione S-transferase-tagged RANKL was
         Femurs from 6 to 7 week old wild type          expressed and purified as described (67). TRAP
or Notch2tm1.1Ecan mice were collected after            enzyme histochemistry was conducted using a
sacrifice, surrounding tissues dissected, the           commercial kit (Sigma Aldrich), in accordance
proximal epiphysis excised and the bone marrow          with manufacturer’s instructions.         TRAP-
removed by centrifugation. The distal epiphysis         positive cells containing more than 3 nuclei were
was removed and, to release the endosteal and           considered osteoclasts. Cultures were carried out

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periosteal cellular layers, the femoral fragments       in the presence of Notch2 or control ASO at
were sequentially exposed for 20 min periods to         various doses as indicated in figure legends.
type II collagenase pretreated with Nα-Tosyl-L-
lysine chloromethylketone hydrochloride 17              Cell Proliferation Assay
µg/ml and EDTA 5 mM (Life Technologies) at                       Cell replication was determined using
37°C, as described (4,64). Osteocyte-enriched           the Cell Counting Kit-8 (CCK-8). In this kit, the
bone fragments were obtained and cultured               tetrazolium salt WST-8 [2-(2-methoxy-4-
individually in DMEM supplemented with                  nitrophenyl)-3-(4-nitrophenhyl)-5-(2,4-
nonessential amino acids, 100 µg/ml ascorbic            disulfophenyl)-2H-tetrazolium,     monosodium
acid and heat-inactivated 10% FBS for 72 hours          salt] produces a formazan dye, measured at an
in a humidified 5% CO2 incubator at 37°C in the         absorbance of 450 nm, upon reduction by
presence of control or Notch2 ASOs, as                  cellular dehydrogenases. The assay quantifies
indicated in figure legends (4,65).                     viable cells and was used in accordance with
                                                        manufacturer’s instructions (Dojindo Molecular
Bone Marrow-derived Macrophage (BMM)                    Technologies, Rockville, MD).
Cultures and Osteoclast Formation
        To obtain BMMs, bone marrow cells               Quantitative Reverse Transcription (qRT)-PCR
were isolated from long bones by flushing the                    Total RNA was extracted from either
marrow with a 26 gauge needle. Red blood cells          cultured cells or tibiae following the removal of
were lysed in lysis buffer containing 150 mM            the bone marrow by centrifugation, and mRNA
NH4Cl, 10 mM KHCO3 and 0.1 mM EDTA (pH                  levels determined by qRT-PCR (68,69). For this
7.4). The cell suspension was centrifuged and           purpose, equal amounts of RNA were reverse-
the pellet suspended in α-minimum essential             transcribed using the iScript RT-PCR kit
medium (α-MEM) (Life Technologies)                      (BioRad, Hercules, CA), according to
containing 10% heat-inactivated FBS and                 manufacturer’s instructions, and were amplified
recombinant human macrophage colony                     in the presence of specific primers (Table 3, all
stimulating factor (M-CSF) at 30 ng/ml. M-CSF           primers from Integrated DNA Technologies
complementary DNA (cDNA) and expression                 (IDT), Coralville, IA), and iQ SYBR Green
vector were obtained from D. Fremont (St.               Supermix (BioRad), at 60ºC for 35 cycles.
Louis, MO) and M-CSF was purified as                    Transcript copy number was estimated by
previously reported (66). Cells were seeded at a        comparison with a serial dilution of cDNA for
density of 3 x 105 cells/cm2 on uncoated Petri          Bglap (from J. Lian, Burlington, VT) Hey1 and
dishes and cultured for 3 days.                         Hey2 (both from T. Iso, Gunma, Japan), HeyL
                                                        (from D. Srivastava, San Francisco, CA), Notch2

                                                    8
ASOs and Hajdu Cheney

(from Thermo Fisher Scientific), Notch1 (from           Immunoblotting
J.S. Nye, Cambridge, MA), Notch4 (from Y.                        Pre-osteoclasts or osteoblasts from
Shirayoshi, Tottori, Japan) or Tnfsf11 (from            control or Notch2tm1.1Ecan mice were extracted in
Source BioScience, Nottingham, UK) (70-75).             buffer containing 25 mM Tris-HCl (pH 7.5), 150
Notch3 copy number was estimated by                     mM NaCl, 5% glycerol, 1 mM EDTA, 0.5%
comparison to a serial dilution of a ~100 base          Triton X-100, 1 mM sodium orthovanadate, 10
pairs synthetic DNA template (IDT) cloned into          mM NaF, 1 mM phenyl methyl sulfonyl fluoride
pcDNA3.1 (Thermo Fischer Scientific) by                 and protease inhibitor cocktail (all from Sigma
isothermal single reaction assembly using               Aldrich). Quantified total cell lysates (35 µg of
commercially available reagents (New England            total protein) were separated by sodium dodecyl
BioLabs, Ipswich, MA) (76).                             sulfate (SDS)-polyacrylamide gel electro-
         To measure levels of the Notch26955C>T         phoresis (PAGE) in 8% polyacrylamide gels and
mutant transcript, total RNA was reverse                transferred to Immobilon-P membranes
transcribed with Moloney murine leukemia virus          (Millipore, Billerica, MA). The blots were
reverse transcriptase in accordance with                probed with anti-NOTCH2 (C651.6DbHN)
manufacturer’s instructions (Life Technologies)         antibodies (Developmental Studies Hybridoma
in the presence of reverse primers for Notch2 and       Bank (DSHB C651.6DbHN, University of Iowa,
                                                        Iowa City, IA)) and β-actin (3700) antibodies

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of reverse primers for ribosomal protein L38
(Rpl38) (Table 3). Notch2 cDNA was amplified            (Cell Signaling Technology, Danvers, MA) and
by PCR in the presence of specific primers, a           exposed to anti-rabbit IgG and anti-rat IgG
TET labeled DNA probe of sequence 5’-                   conjugated to horseradish peroxidase (HRP)
CATTGCCTAGGCAGC-3’ covalently bound                     (Sigma-Aldrich) and incubated with a
to a 3’-minor groove binder quencher (Life              chemiluminescence detection reagent (Bio-
Technologies), and SsoAdvanced Universal                Rad). Chemiluminescence was detected by
Probes Supermix (BioRad) at 60ºC for 45 cycles          ChemiDoc™ XSR+ molecular imager (Bio-
(10,77). Notch26955C>T transcript copy number           Rad) with Image Lab™ software (version 5.2.1)
was estimated by comparison with a serial               and the amount of protein in individual bands
dilution of a synthetic DNA fragment (IDT)              was quantified (15).
containing ~200 bp surrounding the 6955C>T
mutation in the Notch2 locus, and was cloned            Serum Carboxy-terminal Collagen Crosslinks
into pcDNA3.1(-) (Life Technologies) by                 Assay
isothermal single-reaction assembly using                       Serum samples from control and
commercially available reagents (New England            experimental mice were obtained after an
Biolabs, Ipswich, MA) (76).                             overnight fast. CTX levels were measured using
         Amplification reactions were conducted         an enzyme-linked immunosorbent assay kit
in a CFX96 qRT-PCR detection system                     according to manufacturer’s instructions
(BioRad), and fluorescence was monitored                (Immunodiagnostic Systems, Gaithersburg,
during every PCR cycle at the annealing step.           MD).
Data are expressed as copy number corrected for
Rpl38 copy number, estimated by comparison              Statistics
with a serial dilution of Rpl38 cDNA (from                       Data are expressed as means ± standard
ATCC) (78). In selected experiments, control            deviations (SD). Statistical differences were
data were normalized to 1 following correction          determined by analysis of variance with Holm-
for Rpl38 expression.                                   Sidak’s post-hoc analysis for pairwise or
                                                        multiple comparisons.

                                                    9
ASOs and Hajdu Cheney

Acknowledgments: The authors thank D, Srivastava for HeyL cDNA, D. Fremont for M-CSF cDNA,
M. Glogauer for RANKL cDNA, T. Iso for Hey1 and Hey2 cDNA, J. Lian for Bglap cDNA, J.S. Nye for
Notch1 cDNA, Y. Shirayoshi for Notch4 cDNA, T. Eller for technical assistance and Mary Yurczak for
secretarial support. This work was supported by grants DK045227 (EC) from the National Institute of
Diabetes and Digestive and Kidney Diseases and AR076747 (EC) from the National Institute of Arthritis
and Musculoskeletal and Skin Diseases.

Disclosure statement: Tamar R. Grossman and Michele Carrer are employed by Ionis Pharmaceuticals,
Inc., Ernesto Canalis, Lauren Schilling and Jungeun Yu have nothing to disclose.

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ASOs and Hajdu Cheney

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FOOTNOTES
This work was supported by grant DK045227 (EC) from the National Institute of Diabetes and Digestive
and Kidney Diseases and grant AR076747 (EC) from the National Institute of Arthritis and
Musculoskeletal and Skin Diseases. The content is solely the responsibility of the authors and does not
necessarily represent the official views of the National Institutes of Health.

The abbreviations used are: αMEM, α-minimum essential medium; ASO, antisense oligonucleotide;
BMM, bone marrow macrophage; BV/TV, bone volume/tissue volume; CTX, carboxy-terminal collagen
crosslinks; CCK, Cell Counting Kit; cDNA, complementary DNA; Ctrl, control; Conn.D, connectivity
density; DMEM, Dulbecco’s modified Eagle’s medium; FBS, fetal bovine serum; HCS, Hajdu Cheney
Syndrome; HES, Hairy Enhancer of Split; HEY, Hes-related with YRPW; HRP, horseradish peroxidase;
HA, hydroxyapatite; M-CSF, macrophage colony stimulating factor; MAML, mastermind; μCT,
microcomputed tomography; NICD, NOTCH intracellular domain; N2ICD, NOTCH2 intracellular
domain; NRR, negative regulatory region: Ob, osteoblasts; OCP, osteoclast precursors; PEST, proline
(P), glutamic acid (E), serine (S) and threonine (T); PAGE, polyacrylamide gel electrophoresis; PCR,
polymerase chain reaction; qRT, quantitative reverse transcription; RANKL, receptor activator of nuclear
factor Kappa B ligand; RBPJκ, recombination signal-binding protein for Ig of κ; Rpl38, ribosomal protein

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L38; SDS, sodium dodecyl sulfate; SD, standard deviation; SMI, structure model index; TRAP, tartrate-
resistant acid phosphatase; Tb.Th, trabecular thickness; Tb.N, trabecular number; Tb.Sp, trabecular
separation; Tnfsf11, tumor necrosis factor superfamily member 11

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