College of Science Research Symposium - 15th Annual Friday, April 29, 2022 12 - 2 p.m - Cal Poly Pomona
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15th Annual College of Science Research Symposium Friday, April 29, 2022 12 – 2 p.m. University Quad (in front of Building 8)
2022 College of Science Research Symposium BIOLOGICAL SCIENCES 1. Assessing the variation in gut length of Garibaldi, Hypsypops rubicundus Daniel Aguilar*, Brenda E. Calderon Aceve, Chelsea M. Williams, Jacob L. Eagleton, Advisor: Jeremy Claisse Garibaldi, Hypsypops rubicundus, are an omnivorous California native fish species typically found in the rocky subtidal zone. Garibaldi have year-around feeding territories, and during the spawning season males actively protect a nesting site within the territory. As part of an ongoing diet study in the Claisse Lab, gut length data is being collected but has yet to be analyzed. This study will investigate variation in gut length in Garibaldi between males and females and assess allometric relationships with body length. Garibaldi diet has also been shown to vary between artificial (breakwater) and natural rocky reefs so I will also investigate if gut length varies between these habitats. Additionally, I will compare Garibaldi gut lengths and allometric relationships to those found in the literature for other damselfish (Pomacentridae) species, as well as other marine fishes with different types of diets (e.g., herbivore, omnivore, carnivore). The length of the intestine typically related to diet type and in some fish species has been shown to vary in relationship to seasonal or environmental factors. 2. Understanding developmental and molecular changes underlying floral organ abscission in Aquilegia Ana Alcaraz Echeveste, Advisor: Bharti Sharma While the flowers may be the most visually charismatic aspect of the plants, they are also highly complex. Using Aquilegia coerulea (Columbines) as a model system the proposed project goals are to understand 1) morphological and developmental changes underlying floral organ expansion and maturation 2) the genetic basis of organ maturation and identification of genes underlying the process of organ shedding or abscission in sepals and petals 3) the molecular and developmental changes in the gynoecium before and after pollination through seed set. We are using histology and scanning electron microscopy for developmental analysis. The developmental work will identify a) the timing of abscission zone (AZ) formation in showy sepals and petals and b) track morphological changes in the gynoecium as it matures. We are also conducting RNA-seq on sepals, petals, carpels, and ovules from critical stages identified through developmental studies. The transcriptomic dataset from sepals, petals, and receptacles will be used to identify the candidate genes that are involved in Abscission zone formation. The transcriptome data from the carpels and ovules will be used to understand the molecular changes in gynoecium pre and post- pollination. 3. The Impact of Teaching about Patterns of Human Variation on Non-Biology Major Students' Views of Human Races Christian Aquino, Advisor: Paul Beardsley Many Americans hold misconceptions that people from different socially constructed races have large genetic and phenotypic differences. In this study we assessed the impact of a scientific
2022 College of Science Research Symposium curriculum on patterns of human diversity on undergraduate non-biology majors' understanding of the biological aspects of race and genetics. The subjects were enrolled in a virtual non-majors Life Science general education course during Fall semester 2021. Working with 3 faculty professors, subjects were assigned to a treatment (3 sections) or a control group (2 sections). Students in the treatment group completed a short human diversity interactive activity that used patterns of human diversity to address specific misconceptions. Students in a control section learned genetics as it is typically taught. All students in the study completed a pre-test (n=199) and an identical posttest which included questions to assess participants' confidence. Initial analysis of the pre-test data shows no significant baseline differences between the treatment group and control group. Data from the pre-test suggests that a higher percentage of students in this course hold misconceptions about patterns of human diversity than in other published work. For instance, 51% of students responded that there are individual traits that can be used to define a racial group (compared to 24%) and 70% (as opposed to 27%) think that there are more biological differences between racial groups than between individuals within a race. Nonetheless, the short lesson activity about the biological aspects of race and human variation was effective in increasing student understanding of human variation and how it relates to socially defined races (p
2022 College of Science Research Symposium trogocytosis. To determine if trogocytic bites of Tv are digested by neutrophil lysosomes, we inhibited lysosomes using inhibitors NH4Cl and Concanamycin A. We hypothesize that extracellular degranulation is needed for neutrophils to form "bites" of trichomonads, CD89 bound to IgA will also facilitate trogocytosis, and the trogocytic bites of Tv are digested within lysosomes. Due to the short-lived nature of neutrophils, our experiments will be conducted using neutrophil- like cells (NLCs). To create knockouts in our NLCs, we designed and constructed RNP, HDR oligonucleotides for each gene and delivered them into the cell line via electroporation. Using the knockout NLCs, we will conduct cytolysis and trogocytosis assays with Tv to determine whether these neutrophil genes are needed to facilitate the trogocytic killing of Tv. To determine the requirement of lysosomes in the killing of Tv, we inhibited the NLC lysosomes using NH4Cl and Concanamycin and co-culture the NLCs with Tv. These results will provide us with a better understanding of how neutrophils respond to the parasitic infection and how neutrophils function in general. 6. Avian Community Shift over Seasons in an Urban-Agroecosystem Rachel E. Bockrath, Advisor: Elizabeth S.C. Scordato Changes in human land use are contributing to the decline of global avian populations, and are reordering avian community structure across habitats. While studies have independently been conducted in the context of agricultural expansion and urbanization, we lack a clear understanding of how avian communities change across natural, urbanized, and agricultural habitats over seasons. Understanding how avian species use these diverse habitats will improve conservation and management decisions. To understand the changes in avian community composition across habitats and seasons, I am conducting point count surveys in the Santa Clara River Valley (SCRV) of Southern California. The SCRV is a heterogeneous urban-agroecosystem that contains five major habitat types common throughout California: a restored riparian corridor, remnant coastal sage scrub, citrus and avocado orchards, suburban neighborhoods, and urban areas. My preliminary results indicate that each habitat hosts a unique avian community, but those communities change over seasons as some species are more flexible in their habitat use. This study will help reveal the changes in avian community composition over seasons in this heterogeneous urban- agroecosystem. 7. Garlic's effects on lipopolysaccharide and lipoteichoic acid induced cytokine secretion in J774A.1 cells Megan Bradley*, Benjamin Zousel, Advisor: Nancy Buckley Garlic has been used for centuries as a condiment and for medicinal purposes. Garlic is known to modulate the immune system. Important cells of the innate immune system include macrophages. The purpose of this project was to compare the effects of garlic on the secretion of tumor necrosis factor-alpha (TNF-α) from macrophages challenged with either lipopolysaccharide (LPS) or lipoteichoic acid (LTA). TNF-α is a pro-inflammatory cytokine and the major cytokine produced by macrophages. LPS is a component of the outer cell membrane of gram-negative bacteria, while LTA is a component of the cell wall in gram-positive bacteria. To investigate how garlic affects TNF- α secretion from LPS challenged macrophages vs those challenged with LTA, J774A.1 murine
2022 College of Science Research Symposium macrophages were plated at 1.25*105 cells/mL. After incubating the cells for 24h at 37°C with 5% CO2, the conditioned media was replaced with fresh media and the cells were treated with LPS (1 μg/mL) or LTA (0.5-1 μg/mL) in the absence or presence of varying concentrations of garlic. After another 24h incubation, we collected the cell supernatant and did an enzyme linked immunosorbent assay (ELISA) to measure the TNF-α secretion. To determine whether any of the treatments were toxic to the cells, we performed a protein assay and an XTT cell viability assay. Our results show that garlic treatment in the presence of LPS increases TNF-α secretion in J774A.1 cells when compared to control cells. Similarly, garlic treatment in the presence of LTA increases TNF-α secretion in J774A.1 cells. These findings suggest that garlic modulates TNF-α secretion from macrophages in response to bacterial molecules. The importance of our findings is that they could have relevance to emerging research in phytomedicine regarding the potential therapeutic effects of garlic in the prevention and/or treatment of infections. 8. SPATIAL AND HABITAT VARIATION IN DIET COMPOSITION AND ASSOCIATED LIFE HISTORY PATTERNS OF GARIBALDI (HYPSYPOPS RUBICUNDUS) IN THE SOUTHERN CALIFORNIA BIGHT Brenda E. Calderon, Chelsea M. Williams, Jacob L. Eagleton, Advisor: Jeremy Claisse Life history patterns of marine fish species can vary across their geographic range. Although this variation is most often observed at large spatial scales, studies have demonstrated variability in growth, adult size, and reproduction across relatively small areas. Some of the proposed causal mechanisms include sea surface temperature, diet, inter- and intraspecific interactions, and size- selective fishing; however, the primary drivers are often unclear. Along the California coast, the Southern California Bight (SCB) creates a dynamic environment with diverse bathymetry and a temperature gradient caused by contrasting currents. The SCB is home to Garibaldi (Hypsypops rubicundus), a pomacentrid marine fish discernable from other southern California reef species for its bright orange coloration and high territoriality. Both sexes of Garibaldi exhibit high site fidelity, defending permanent feeding territories of 10-15m2 year-round. For mating males, these territories include a nesting site which is typically maintained by the same individual through consecutive breeding seasons. Garibaldi have benefited from state-wide protection from recreational and commercial fishing since 1995, when it was named the California State Marine fish. Their long lifespan compared to other reef fishes, high site fidelity, and non-fished status could make assessing their life history patterns a good way to comparatively measure habitat quality. Garibaldi were collected between 2013 and 2019 from ten locations (5 island, 5 mainland) across the SCB. Previous projects in our lab found size frequency distribution and growth pattern differences by location, reef type (natural or artificial breakwater reef), and sex. Garibaldi grow larger and live longer in cooler locations and on artificial reefs and exhibit clear sexual dimorphism (males larger than females). Analyses of Garibaldi diet composition collected from the mainland locations showed significant variation in diet by location and reef type. In the present study, I plan to continue diet composition analysis by processing samples from island locations and combining this with the mainland diet data. Results from all studies will then be
2022 College of Science Research Symposium analyzed to assess how spatial and habitat variation in diet is correlated with known life history patterns of Garibaldi in the SCB. 9. Deletion of Tyrosine Hydroxylase in FoxP2-expressing Dopaminergic Neurons does not inhibit Food Anticipatory Activity Adriana Y. Castro*, Jacqueline R. Trzeciak, Advisor: Andrew D. Steele Dopamine (DA) signaling has been found to be vital in circadian entrainment to food availability and the development of food anticipatory activity (FAA). FAA is characterized by high levels of locomotor activity preceding the scheduled meal time. While numerous experiments have failed to find a particular brain region that is responsible for circadian food entrainment, prior studies have indicated that DA signaling in the Dorsal Striatum act on D1R receptors to link mealtime to circadian activity cycles. To identify the DA neurons that control FAA, we conditionally deleted Tyrosine-hydroxylase (Th), a rate limiting enzyme for dopamine synthesis, with Cre recombinase targeted to the FoxP2 locus. While testing Th deletion in FoxP2-Cre loci, we found that mice with conditional knockout of Th had no impairment to FAA when compared to the wild-type. This observation suggests that the population of FoxP2-Cre expressing dopaminergic neurons are not required for FAA. 10. Anatomical Response and Community Modeling of Quercus agrifolia to Low Atmospheric CO2 Utilizing Material from The La Brea Tar Pits Matthew E. Cline, Edward Bobich, Regan Dunn, Frank Ewers, Advisor: Edward Bobich The La Brea Tar Pits (Los Angeles, CA) was an active tar seep throughout the middle to late Pleistocene. These tar seeps trapped and preserved much of the local flora and fauna once found within the Los Angeles region. Fossils recovered at the La Brea Tar Pits can be used to infer the response to changes in past environments. Comparing these fossils to extant species can provide insight into the individual and community response to low atmospheric CO2 and other climatic variables associated with glacial periods within the Pleistocene. Using plant material recovered from a packrat midden found at the La Brea Tar Pits (C14 ~46,000-47,000 y.a. ; Mychajliw et al., 2020) the anatomical response of Quercus agrifolia (coast live oak) to low atmospheric CO2 is observed. Low atmospheric CO2 functions as a selection pressure for plants as it reduces the rate at which carbon fixation can occur. Fossil samples provided by the La Brea Tar Pits are used in conjunction with live samples collected from field sites for direct comparison. Anatomical measurements such as stomatal size, density, and adaxial epidermal cell morphology are used to model and interpret the response to low atmospheric CO2. Modern physiology measurements are collected to utilize in modeling of past physiologic response to the environment. In addition to these anatomical and physiologic measurements, modeling of canopy coverage as a response to low atmospheric CO2 using Leaf Area Index (LAI) and modeling local atmospheric CO2 using the Franks Model (Franks et al., 2014) are used to assess the community response and environmental conditions during the Late Pleistocene. Preliminary results indicates that low atmospheric CO2 affects both the functional anatomy of individual trees and stands of Q. agrifolia.
2022 College of Science Research Symposium 11. T cell derived XCL1 facilitates the interaction with XCR1+ DCs within the CNS during WNV encephalitis Kristen De La Torre, Advisor: Douglas Durrant West Nile Virus (WNV) is a mosquito-borne flavivirus that causes encephalitis, especially in elderly and immunocompromised individuals. Previous studies have demonstrated that CNS-localized dendritic cells (DCs) protect against WNV neuroinvasive disease by establishing antiviral T cell responses in the CNS. In this study, we investigated the role of the XCL1-XCR1 interaction since its primary function is to promote DC-mediated CD8+ T cell immunity. XCR1, a chemokine receptor expressed predominately by a subset of DCs, mediates their migration in response to its ligand XCL1. We found that XCR1-deficient (XCR1-/-) mice demonstrated increased symptomatic disease and mortality after subcutaneous infection with WNV. In addition, WNV-infected XCR1-/- mice exhibited significantly increased viral burden in the CNS at day 12 post-infection. Within the WT CNS, we found increased XCL1 expression on day 6 post-infection. In contrast, the expression of its receptor, XCR1, increased on day 9 post-infection compared with uninfected CNS. As XCL1 is known to be produced by NK and CD8+ T cells, we next sought to determine which cells express XCL1 and at which locations during WNV encephalitis. Interestingly, compared with splenic T cells, CD8+ T cells isolated from the CNS and cervical lymph nodes from WT mice showed high XCL1 expression. These observations lead us to hypothesize that T cell-derived XCL1 facilitates interactions with XCR1+ DCs within the CNS during WNV encephalitis. 12. Identification and Classification of Gymnodoris sea slugs from New Caledonia Jade De Souza-Canal, Advisor: Angel A. Valdés On the coast of New Caledonia, the number of marine mollusk species recorded is much higher than in most other comparable areas on Earth. Moreover, islands like New Caledonia present extraordinary high levels of endemism, and the fauna is largely composed of rare species. Undescribed species still represent 80% of all the species present there. The taxonomy of the nudibranch genus Gymnodoris (Mollusca, Gastropoda) is examined in this study, with specimens collected from New Caledonia that will be investigated with an integrative approach. This genus is composed of 30 known species, most of them being less than 2 cm in length, with yellow, orange and white colors. A total of 92 specimens of Gymnodoris and tissue samples are studied here, using dissecting microscopy and scanning electron microscopy for morphological descriptions; and DNA extraction and amplification, sequencing and phylogenetic trees for phylogenetic analysis. The results from this taxonomic study will help broaden our knowledge and understanding of the evolution and diversification of the genus Gymnodoris. Studying the taxonomy of New Caledonia nudibranchs will provide insight on this region's endemism, and more generally, help unravel biogeographical patterns of marine endemism, as identifying undescribed species helps get better estimations of species richness and biodiversity. 13. Physiological ecology of two desert perennials along an elevational gradient in the Northwestern Sonoran Desert John DiGildo*, Matthew Cline ,Erin Questad, Frank Ewers , Edward Bobich, Advisor: Edward Bobich
2022 College of Science Research Symposium The Sonoran Desert is the most speciose desert in North America. Plant distributions within this ecoregion rely on oscillating climatic conditions driving bimodal cool- and warm-season precipitation. In this study, physiological differences of two desert perennials, Ambrosia dumosa and Encelia farinosa, are being investigated along a topographic gradient at the University of California, Riverside Philip L. Boyd Deep Canyon Desert Research Center, during a period of extreme drought. Plants have been monitored since fall 2021 along 100 m transects at six elevations (sites) in the Deep Canyon watershed: three sites in the flood plain (two low elevation wash sites at 193 m and 240 m, and a site along a rocky slope at 286 m), a steep mid-elevation slope site (480 m), and two rocky high elevation north-facing slopes (Agave Hill at 818 m and Lookout Hill at 851 m). The physiological assessment of the species includes gas exchange, chlorophyll fluorescence, and predawn and midday water relations. Further, phenologic observations of the canopy and leaf characteristics, and flowering, as well as measurements of leaf area and mass, have been recorded. Finally, climate data (precipitation, temperature, and relative humidity) have been analyzed over the study period at three different elevations in the Deep Canyon watershed. Preliminary measurements reveal physiological differences along the topographic gradient; both E. farinosa and A. dumosa have higher water potentials, and greater CO2 uptake and maximum quantum efficiency of photosystem II at the two highest elevations than they do in the flood plain and the mid-elevation site. This is in spite of the fact that the plants at the lower elevations are typically larger than they are at the higher elevations. 14. Comparison of the Culturing Method and Antibody Base Rapid Test Device for the Detection of Environmental Listeria Liana Ab Samad, Diana Duenas Alejandre, Wei-Jen Lin, Advisor: Wei-Jen Lin Listeria monocytogenes causes listeriosis, a serious foodborne illness in humans. Listeria species are abundant in soil, vegetations, and intestines of some animals. The microorganism can withstand substantial environmental hardship and persist in the natural and built environment for an extended amount of time. In addition, Listeria species are able to reproduce at refrigeration temperature, posing a serious food safety concern especially for refrigerated ready-to-eat food products. Outbreaks of listeriosis have been associated with the ingestion of a variety of raw and processed foods, including ready-to-eat meats, salads, and dairy products. Listeria monocytogenes is one of the most costly foodborne pathogens owing to its frequent involvement in large outbreaks, product recalls, and hospitalizations. Current FDA and USDA guidelines require the absence of Listeria monocytogenes in ready-to-eat meats, poultry, and deli products, as well as the absence of Listeria species on the food contact surfaces and environment of food processing facilities (1,2) . Therefore, a reliable and efficient environmental Listeria monitoring method is essential for the compliance of the current food safety guidelines, as well as the protection for consumer safety. The standard culturing methods outlined in the USDA/FSIS MLG 8.11 and FDA BAM Chapter 10 involve two selective enrichment steps and the subsequent selective plating, requiring 5 days to obtain a negative result. The findings of our study show the REBEL Method with BioMedix Listeria Test Kit is statistically equivalent to the reference method when tested on any of the three surface materials. The REBEL Method with CHROMagar Listeria tested on tile surface also shows statistical equivalence to the reference method. The REBEL Method provides a reliable and easy-to-use alternative for detecting environmental Listeria spp. and results can be
2022 College of Science Research Symposium obtained within 24 hours when screened by the BioMedix Listeria Test Kit and 48 hours when screened by the CHROMagar Listeria. 15. The impact of small vertebrates on community assembly in degraded California sage scrub Taylor N. Edwards*, Erin J. Questad, Advisor: Erin J. Questad Native consumers have been found to influence plant recruitment and community assembly, depending on what species they prefer. In California sage scrub, little is known about the preferences of small vertebrate consumers, although their feeding behavior may affect interspecific competition between native and invasive plant species. Moreover, there is an unexplored opportunity to investigate which plant functional traits are preferred by small herbivores in the sage scrub community. We established caged and uncaged native restoration plots in degraded sage scrub in order to investigate the effects of consumers on community assembly. Thirteen native species were hand-seeded into research plots dominated by invasive grasses and forbs. Three community types were created using different seed treatments (dominated by a preferred species (Stipa pulchra), dominated by a less preferred species (Salvia mellifera), or control with species included in equal abundance). Plant recruitment and growth were monitored in experimental communities while motion activated trail cameras recorded consumer activity. Preliminary results showed that both native and invasive species grew better in caged conditions compared to uncaged. Consumers appeared to prefer native over invasive species. For example, the recruitment of two nitrogen-fixing native annuals with the largest seeds (Lupinus hirsutissimus and Lupinus bicolor) was limited to caged plots only. Camera evidence revealed a strong presence of granivorous birds after seeding. Research plots were most frequently visited by Melozone crissalis (California towhee), Zonotrichia leucophrys (white- crowned sparrow), and Sylvilagus audubonii (desert cottontail) in the weeks following seed addition. Continued data collection through the spring season will yield results on overall community and functional composition. So far, results suggest a notable influence of small granivores and herbivores on sage scrub community assembly, which may have implications for the success of native restoration. 16. Anthropogenic Impacts on Population Distribution and Suitable Habitat of Welcome Swallows (Hirundo neoxena) Alexis Garvin, Advisor: Elizabeth Scordato Human land use has risen steadily over the last several thousand years, but the long term effects of human land use change on demographic processes of other organisms are largely unknown. The welcome swallow (Hirundo neoxena) is an insectivorous bird found throughout Australia and nearby islands. Welcome swallows build their nests on man-made structures such bridges and buildings. An increase in human land use has likely provided them with more nesting habitat, which may have lead to an increase in population size over time. This commensal relationship with humans makes the Welcome swallow an ideal system to study the effects of long-term human activity on species distributions. In this study I am assessing the effects of longer-term human activity on the distribution of the welcome swallow using sighting records from Ebird and species distribution models implemented through the maxent package in R. Species distribution models
2022 College of Science Research Symposium (SDMs) estimate the relationship between observed species occurrences and the spatial characteristics of the locations they occupy to produce predictive models that allow us to assess changes in available habitat over time. Our data will provide crucial information on how anthropogenic factors play a role in the demographic changes of this commensal species as a result of long-term human landscape alteration. 17. Herbivory of Native and Non-native California Sage Scrub Vegetation Alyssa L. Goldpenny, Taylor N. Edwards, Erin J. Questad, Advisor: Erin J. Questad It is only in the last several years that herbivory within the endangered California sage scrub ecosystem has been more closely studied. Prior studies that exist have shown that herbivores prefer native species and avoid non-native invasive species in some ecosystems. We examined small herbivore (Desert Cottontail, California Towhee, White-Crowned Sparrow, etc.) predation levels on both native and non-native plant species that occur in the sage scrub ecosystem. Species included Amsinckia intermedia, Clarkia purpurea, Lupinus bicolor, Salvia mellifera, and Stipa pulchra for the natives, and Bromus diandrus, Centaurea melitensis and Hirschfeldia incana for the non-native invasives. The experiment utilized five plots located in the Voorhis Ecological Reserve where seedlings were planted and observed over ten days. It was found that by far, two native species were favored, specifically A. intermedia and L. bicolor, while the other three were avoided, along with the three non-natives. Specifically, L. bicolor is a known nitrogen fixer, and this could be a large part of why this species was favored so heavily. This leads us to our first area of future study, focusing on the nitrogen and carbon content of each species, in the hopes of uncovering a pattern between chemical composition and herbivory preference/avoidance. Our second area involves mining footage from wildlife cameras set up at each block to gather data on which specific small herbivore species are behind both herbivory in general as well as specific species predation. With this study, we show that native plant species are favored over non-native species, giving future restoration projects of these sage scrub ecosystems a solid direction to go in. From what we've found, restoration projects should focus on these three avoided species of native vegetation, as these will have a higher chance of surviving in the natural ecosystem when outplanted. 18. Verifying A Genetic System Created For STIV3 Addyson E. Hebbert, Advisor: Jamie C. Snyder Viruses that infect prokaryotes and eukaryotes have received extensive research throughout the past century. One area of research that is currently lacking is our understanding of archaeal viruses. When compared with prokaryotic and eukaryotic viruses, the overall knowledge of archaeal viruses is very minimal. Sulfolobus Turreted Icosahedral Virus 3 (STIV3) was discovered within a hot spring in Yellowstone National Park. The host cell, Sulfolobus Acidocaldarius, grows at high temperature of around 80°C and an acidic pH of approximately 3. These growing conditions can be easily replicated in a laboratory setting making this an ideal archaeal virus to conduct research on. Due to the relatively large size of the STIV3 genome a genetic system was created that allows for easier genetic manipulation. Through this subclone system the full-length viral genome is split into five smaller subclones allowing for a more viable form to be researched. The
2022 College of Science Research Symposium goal of my project is to verify that this subclone system is feasible by conducting mutagenesis of the subclones and observing changes of the host cell phenotype. Testing of the host cell phenotype will be performed by mechanisms which include, but not limited to qPCR, western blots, plaque assays, and imaging. 19. Effects of Alternative Liposomal Amphotericin B Treatment Regiment on Pulmonary Aspergillosis in Metabolically Normal Mice Diego Henriquez, Jon Olson, Nancy Buckley, Advisor: Nancy Buckley Obesity in the United States has reached an all-time high. Nationwide 44.2% of adults are considered obese (BMI >30), and this often is closely correlated to a high incidence of type 2 diabetes (T2DM). It is known that these kinds of immunocompromised individuals result in a lowered ability to resist infection and maintain a heightened level of basal inflammation. These conditions result in an increased susceptibility to infections of all kinds, particularly respiratory infections. The most common respiratory mold infection is humans is known as pulmonary aspergillosis and is most commonly caused by Aspergillus fumigatus. Currently patients suffering from this type of infection must undergo 14 days of intravenous treatment of Liposomal Amphotericin B (AmBisome®) in a hospital setting. Although the overall question involves what contribution the metabolic status of the host might have on the distribution of drug throughout the body, the goal of this portion of the study was to determine if alternative treatment regiments are equally effective in clearing severe pulmonary aspergillosis from otherwise healthy mice. In this study the 10-week old male ICR mice were sedated and infected intranasally with 5.7 x 106 A. fumigatus spores and divided into three main groups, the control mice, non-intermittent and intermittently AmBisome-treated mice. The control mice were given intravenous 5% dextrose solution (D5W) daily for seven days and the remaining mice were treated intravenously with 5mg/kg of AmBisome daily for seven days. The non-intermittent group received no further treatment after those seven days. The intermittent treatment groups of mice were treated three times a week with 5 mg/kg of AmBisome intravenously for either one week, two weeks or three weeks. Tissues (heart, lungs, kidney, spleen, pancreas, kidney, fat, feces and brain) were collected on days 1, 8, 15, 22 and 29. To date, only the lungs have been processed and the effectiveness of the various AmBisome® treatment regimens were assessed based on the fungal burden measured in the lungs of each mouse. While more work is needed to analyze the drug concentration in the lungs, the fungal burden present shows that the mice that received AmBisome® treatment were less sick during the acute phase of infection and were able to regain almost normal weight levels. While the control mice were unable to regain their previous weight, mice treated with any regiment of AmBisome ® had statistically similar we 20. TO BE CRYPTIC OR NOT: WHAT DNA SEQUENCING REVEALS Julie Innabi, Advisor: Angel Valdes Many sea slugs have been identified and classified under certain traits. Phylogenetics and dissections can allow us to re-address classifications of sea slugs and attempt to support or re- evaluate those classifications. In this study, I resolve the relationship between cryptic species
2022 College of Science Research Symposium using molecular phylogenies. The genera Atagema, Sclerodoris, Rostanga, and Jorunna nudibranchs are poorly researched nudibranch groups for cryptic species. This study uses genetic analysis to identify obtained specimens from New Caledonia and any cryptic species in the samples. Lastly, this study uses information on reproductive and digestive structures to further support identification in addition to genetic analysis. 21. Exploring Movement Behavior in Association with Lead Exposure in Turkey Vultures (Carthartes aura) Alec Christian Iskenderian, Alexandria Koedel, Peter Bloom, Miguel Saggese, Advisor: Andrea Bonisoli-Alquati Exploring components of flight behavior such as speed and trajectory after heavy metals exposure can reveal the potential impacts of these pollutants on the health of migratory species. Scavenging birds are essential to ecosystems because they remove carcasses, limiting disease spread. Exposure to lead through a diet of animals killed by lead ammunition poses ecotoxicological and mortality risks to scavenging animals. However, the consequences of lead exposure for migratory behavior have never been tested. Here I compile and analyze tracking data from migrating Turkey Vultures (Cathartes aura), in association with information about their lead exposure from feathers and blood samples. I anticipate that lead toxicity to the physiology and brain function of these migratory Turkey Vultures might lead to impaired flight performance. I will analyze vulture flight tracks collected since 2021 using GPS units from two Turkey Vultures during their spring and fall migration. Movement of the migratory Turkey Vultures will be visualized with DYNAMOvis, a software for mapping and visualization of movement data. By combining data about lead exposure and tracking I will test the idea that lead exposure can have detrimental effects on vultures' flight behavior. Aspects of flight behavior that may be changed are the time intervals between flights, and how efficiently vultures use wind currents and landscape features for soaring. If flight behavior is changed, these results may act as a reference point for larger scale studies of altered flight behavior in this and other raptor species, highlighting the need for reduction of lead exposure to conserve wildlife. 22. HOW MUCH SEED DO WE NEED? SUCCESS OF VARIED SEEDING DENSITIES AND WATERING EFFORTS ON SOUTHERN CALIFORNIA SHRUBLAND RESTORATION IN PLASTIC TREE SHELTERS Meghan A. Jeffus, Advisor: Erin J. Questad Southern California shrubland communities face expansive type conversion into invasive grasslands, largely due to modification into livestock rangeland, high frequency of intense fires, and changing precipitation events. Unpredictable precipitation can make restoration difficult. A solution is to add water manually as part of the restoration; though the associated costs may prove unfeasible in large-scale projects. In addition, native species are outcompeted by intense propagule pressure from invasive seeds in the seed bank, which can be remedied in a restoration project by increasing the density of seeded natives. Seeding shrub species directly into plastic tree-shelters is relatively novel but has been shown to increase plant survival, height, and volume by providing favorable conditions for seedlings. This study will use a field experiment where seeds are added to tree shelters to test the effects of seed density and watering on plant growth and
2022 College of Science Research Symposium establishment. By removing the unpredictability of precipitation with watering, we predict there will be higher levels of establishment at lower seeding densities, reducing the amount of seed needed for successful restoration. The proposed experimental restoration field experiment will occur at the John T. Lyle Center for Regenerative Studies at Cal Poly Pomona. Diplacus longiflorus, Amsinckia intermedia, and Eriogonum fasciculatum, three species commonly utilized in restorations, will be seeded into tree shelters at five varied densities of 10, 25, 50, 100, or 200 seeds per shelter. Half of the individual tree shelters will be given water on a biweekly basis for four months following establishment, with watering continuing for the first two years at larger intervals. To measure the success of the restoration treatments, presence and number of seedlings, germination rate, plant canopy area, and flowering timing and proportion will be recorded. Material and labor costs will be recorded for each treatment. This study aims to quantify the effect of watering treatment on the number of seeds necessary for a successful restoration without a surplus of wasted resources and costs. 23. Correlation Between Adipocyte Nuclear Area and Lipid Accumulation Cristian Jimenez, Mona Ghoul, Zachary Skovgaard, Yuanxiang (Ansel) Zhao, Advisor: Yuanxiang (Ansel) Zhao Adipogenesis is the process of uncommitted human mesenchymal stem cells (hMSCs) differentiating into adipocytes. hMSCs can be stimulated to differentiate into adipocytes in vitro using adipogenic induction media (AIM) composed of insulin, dexamethasone, and 3-isobutyl-1- methylxanthine (IBMX). Our study aimed to determine how the nuclear area changes for both adipocytes and non-adipocytes over 60 days of adipogenesis and how lipid accumulation correlates with the adipocyte nuclear area over the same time period. DAPI and Oil-Red-O stains were used to identify the nucleus and lipid droplets, respectively, at specific time points over 60 days. ImageJ software was used to quantify the nuclear and lipid droplet area. The nuclear area was found to be significantly reduced in adipocytes compared to non-adipocytes at all time point measurements. Lipid droplet size was found to both increases continuously and negatively correlate with adipocyte nuclear area. 24. Genetic Signatures of Selection for Resistance to Lead Exposure in the Turkey Vulture (Cathartes aura) Genome Alexandria Koedel, Alexandra Gresham, Peter Bloom, Miguel Saggese, Allison Shultz, Advisor: Andrea Bonisoli-Alquati Turkey Vultures (Cathartes aura), key scavengers in many ecological communities', often feed on carcasses left behind by hunters who use lead (Pb) shot, resulting in their exposure to this toxic metal and a potential population genetic response. Currently, no information exists about genetic variation in susceptibility to Pb in vultures or whether past exposure to Pb has exerted selection for increased resistance to Pb in this species or any other raptor. Signatures of selection may be identified in the genome through detection of the "hitchhiking effect", in which selectively favorable mutations are fixed in a population thus altering the frequency of alleles at closely linked loci. Consistent with this, in the genome of the Turkey Vulture, we expect signatures of selection at loci associated with known toxic effects of Pb or its detoxification. Such loci may
2022 College of Science Research Symposium include genes involved in oxidative stress response, heavy metal detoxification, and metal transport. We plan to conduct Illumina short-read sequencing of 10 Turkey Vultures that we previously caught, followed by genome assembly using a previous high-quality Turkey Vulture reference genome. We will identify signatures of selection in regions of the Turkey Vulture genome using outlier loci tests and neutrality test statistics such as Fay and Wu's and McDonald- Kreitman test. Evidence of genetic signatures of selection for resistance to Pb exposure in the Turkey Vulture genome will unveil how raptors might face toxicological risk from Pb pollution, and what the role is for evolution (as opposed to plasticity), in supporting the persistence of Turkey Vulture populations in the face of widespread Pb contamination. 25. DETERMINATION OF C92 AS AN ESSENTIAL PROTEIN FOR THE LYTIC CYCLE OF STIV3 George Mariscal*, Michael Overton, Jamie C. Snyder, Advisor: Jamie C. Snyder The study of Sulfolobus turreted icosahedral virus (STIV) has led to the development of a genetic system to study archaeal viruses. Until the discovery of STIV there was not much known about archaeal viruses and their interaction with their hosts from the thermophilic Crenarcheota phylum. STIV is a model virus that replicates in acidic (pH 2.2) high temperature (82C) environments such as the hot springs in Yellowstone National Park, where it was originally discovered with its host S. solfataricus. STIV replicates via a lytic cycle where it forms 7 pyramidal- like shapes on the S-layer surface of its host prior to egressing. The C92 protein in the viral genome has been determined to play a key role in replication and formation of the pyramidal structures. It is evident C92 is essential to replication in STIV, but it is hypothesized to have a greater function than is currently understood. Recently, STIV3, a genetically similar variant of STIV has become a virus of interest that replicates in S. acidocaldarius via lysogenic cycle. A genetic system has recently been developed for STIV3 that is alternative to the current genetic system for STIV and is currently under review within our research. This project aims to determine whether C92 in STIV3 and STIV are functionally identical. To determine this, we will use site-directed mutagenesis followed by transfection to determine if the viral C92 mutants are capable of replication. Viral replication will be tested using qPCR, western blots, and plaque assay. 26. EXAMINING NON-PREGNANT MOUSE LOCOMOTOR ACTIVITY USING NANO TAGS® Jessica Ivonne Martinez, Advisor: Juanita K. Jellyman Nano tag is a novel three-axes accelerometer and temperature sensor for wireless measurement and storage of body temperature and activity data in mice. Few peer-reviewed studies have been published using nano tag devices and there are no published studies in pregnant mice. The objective of the current study was to assess the feasibility of using nano tags to measure animal activity levels before, and during, pregnancy in mice. Swiss Webster mice were used in the study. Under anesthesia, the nano tag was implanted subcutaneously. After at least 5 days of recovery, the mouse was mated overnight, and pregnancy confirmed by the presence of a copulatory plug. Body temperature and activity data were recorded continuously, stored in the nano tag device, and retrieved by near field communication. We will present preliminary temperature and activity data from four mice before and during pregnancy. Our long-term goal is to use nano tags to compare maternal activity levels in two groups of mice during pregnancy.
2022 College of Science Research Symposium 27. SEED PREFERENCE OF SMALL MAMMALS AND BIRDS AND ITS IMPACTS ON COASTAL SAGE SCRUB RESTORATION EFFORTS Ashley L. Bartling, Sandra C. Dansereau, Maddison R. Mejia, Anthony W. Rondon, Erin J. Questad, Advisor: Erin J. Questad The California sage scrub ecosystem has become a habitat for both native and nonnative plant species. In response, restoration efforts are needed to help increase native populations. One of the easiest techniques for restoration is to seed the desired area. However, this method can be impacted by the presence of granivorous animal species, who consume the seeds before they have a chance to germinate. The seed preference of small mammals and birds can contribute to the establishment of invasive and native species throughout this ecosystem. In this study, seed preference trials were conducted from Summer of 2021 through Spring of 2022 to determine the dominant granivore species and the highest preferred seed species from a mix of eight species of native and nonnative seeds. The seeds were presented to consumers in glass petri dishes and monitored with motion-activated trail cameras. Determining which seed species they consume the most can help direct future restoration efforts in the sage scrub ecosystem. 28. DEC-205-expressing dendritic cells inhibit T cell responses during West Nile Virus encephalitis in the central nervous system Chiefe Mo*, Cuong V. Thai, Advisor: Douglas M. Durrant West Nile Virus (WNV), a neurotropic flavivirus, is the leading cause of mosquito-borne neuroinvasive disease in the U.S. Recent studies show that dysfunctional T cell responses correlate with severe disease in both humans and mice. Dendritic cells (DCs) are critical for reactivating antiviral CD8+ T cell responses in the CNS that are required to mitigate viral encephalitis. Previous reports have shown that CNS-localized DEC-205+ DCs accumulate within the CNS during WNV encephalitis; however, their specific role in programming T cell immunity remains poorly understood. DEC-205, an endocytic receptor expressed by DC subsets can promote either antigen- specific effector T cell activation or immunological T cell tolerance. Using a mouse model of WNV encephalitis, we demonstrate that DEC-205-/- mice exhibit enhanced clinical signs of disease and increased mortality compared to WT controls. The enhanced susceptibility in DEC-205-/- mice arose from an increased viral burden with the CNS; however, this was associated with increased inflammatory myeloid, CD4+, and CD8+ T cell infiltrates. In addition, expression of activation markers CD25 and CD44 increased while CD69 levels decreased within the DEC-205-/- mice compared with their WT counterparts. CD69 expression has been shown to be associated with regulatory T cells. To confirm the immunomodulatory role of DEC-205, we will measure CD4+ regulatory T cell frequencies within the CNS of DEC-205-/- and WT animals following WNV infection. Taken together, these data suggest that DEC-205 critically regulates WNV pathogenesis and neuroinvasive disease by limiting immune-mediated pathology in the CNS following WNV infection. 29. Recombinant endolysin as an alternative to antibiotics to treat colibacillosis Richard Nunez Gomez, Meera C. Kelly, Advisor: Junjun Liu
2022 College of Science Research Symposium Recombinant endolysin as an alternative to antibiotics to treat colibacillosis Richard N. Gomez, Meera C. Kelly, Junjun Liu, Ph.D. Department of Biological Sciences California poultry industry is one of the state's agricultural leaders and has an enormous impact to the state's economy with sales value in excess of $2.5 billion annually. One of the diseases threatening the poultry industry is colibacillosis, which is caused by avian pathogenic E. coli (APEC). In the past, antibiotics were used to control the disease. However, frequent use of antibiotics has resulted in resistance and causes food safety concerns. Now, California law bans the routine use of antibiotics, which makes it important to develop alternative approaches to prevent and treat colibacillosis. Endolysin is an enzyme coded by bacteriophage genome, which is capable of lysing bacteria and therefore becomes an attractive candidate. This study aims at the development of recombinant endolysin for the control of APEC. The recombinant endolysin will be engineered to pierce the outer membrane of the Gram-negative APEC and cause bacterial lysis. 30. Investigate whether Garlic modulates the TLR4 pathway differently in murine macrophage cell lines, J774A.1 and RAW264.7 Christian J. Ordaz, Advisor: Nancy Buckley Garlic (Allium sativum) is known to have immunomodulatory effects. Macrophages are important innate immune cells that help remove pathogens. Macrophages can produce cytokines like tumor necrosis factor-alpha (TNF-α) in response to pathogens. Macrophages, via their toll-like receptor-4 (TLR4), detect lipopolysaccharide (LPS), a component of the outer membrane of gram-negative bacteria. LPS stimulates pro-inflammatory mediators such as TNF-α and nitric oxide (NO). TLR4 signaling activates the NF-kB transcription factor to cause a pro-inflammatory response. We have found that garlic stimulates LPS-induced TNF-α secretion from J774A.1 but reduces LPS-induced TNF-α secretion from RAW 264.7 murine macrophages. Thus, we want to investigate whether garlic modulates the production of TNF-α and NO by altering the TLR4 signaling pathway differently in J774A.1 cells compared to RAW 264.7 cells. J774A.1 and RAW 264.7 macrophages were treated with LPS in the presence or absence of garlic. TNF-α cell secretion was assessed from cell supernatants collected 24h after treatment via enzyme-linked immunosorbent assay (ELISA). NO was assessed via the Griess assay. Thus far, we have confirmed that when J774A.1 cells are stimulated with LPS + Garlic, it significantly increases TNF-α secretion levels compared to LPS alone. RAW264.7 cells treated with LPS and Garlic have similar levels of secreted TNF-α levels to cells treated with LPS alone. We also found that Garlic reduced LPS-induced NO production in J774A.1 and RAW264.7 cells compared to LPS only treated cells. Preliminary studies in RAW 264.7 cells also revealed that Garlic alters cytokine and TLR4 mRNA expression transcription levels, suggesting a possible mechanism of action by Garlic. These findings are significant because they further elucidate how garlic affects macrophage immune responses to bacterial components such as LPS.
2022 College of Science Research Symposium 31. Altering the ABE Fermentation Pathway in Clostridium beijerinckii Mark Ortizt, Advisor: Wei-Jen Lin Clostridium beijerinckii has an interesting and extremely useful process that could be harnessed by humanity to better treat ailments or even create a powerful and viable biofuel, however rate of production of these biochemicals is below desired parameters. This process is called ABE fermentation or acetone-butanol-ethanol fermentation and through various other biological processes can also transform into IBE with isopropanol replacing acetone. By utilizing certain gene enhancers and suppressers depending on what genes activated what genes and culturing specific Clostridium strains to see if there are any increases in biochemical production and hopefully exclusive productions of biochemicals, specifically either butanol, or butyric acid or possibly even isopropanol. Utilizing genetic analysis databases such as NCBI Genome and tracking and comparing FASTA files of genes of interest that are known to have a specific part in the metabolic process of the ABE pathway. In this study, we identified x genes from the ABE pathway and x gene. We identified C. b strains isolated from CPP farms were also analyzed for their butyric acid and butanol production. strains of various yields of butyric acid and butanol will be compared to further understand the regulation of ABE/IBE fermentation pathway 32. Effects of ∆9-Tetrahydrocannabinol on Chicken Embryo Growth Kenneth Paredes*, Maya Shattuck, Diana Truong, Juanita Jellyman, Advisor: Juanita Jellyman Over the past 10 years, medical marijuana (Cannabis sativa) has been approved for use in > 22 states. Over a similar time, marijuana use has increased, including by pregnant women. Marijuana use is associated with low birthweight in humans. Similarly, exposure to Δ9-THC reduced birthweights in mice. Cannabis may affect birth weight by changing maternal physiology, placental function, or the growth of the offspring. The objective of the current study was to develop a chick embryo model of embryonic growth. Ten chicken eggs were injected with 50 l warm saline on alternating days from day 2 of development. After euthanasia, images were taken to assess vascularization of the chorioallantoic membrane (n=2; day 10) and the egg weight, chick weight, head circumference, and limb lengths were measured (n=8; day 20). Data are mean ± sem. On day 20, we established mean values for egg weight (48.4 ± 0.500g), chick weight (20.4 ± 0.975g), head circumference (39.2 ± 0.268mm) and wing length (28.6 ± 0.696mm). The long-term goal of this study is to use our model to determine the direct effects of ∆9-THC exposure on growth and development in chicken embryos. 33. Determining the Molecular Mechanisms Behind PMN Trogocytosis of Trichomonas vaginalis Ashley Denise Ramirez*, Frances Mercer, Advisor: Frances Mercer Trichomonas vaginalis (Tv) is a flagellated unicellular parasite responsible for causing the most common non-viral sexually-transmitted infection worldwide, trichomoniasis. Trichomoniasis affects 245 million people annually, with 6.9 million of those cases being in the U.S. alone and has been linked to a direct medical cost in the U.S. of 1.44 million per year. Although Tv is highly prevalent, because it is so understudied, it has been classified as a neglected parasite. A deeper understanding of the molecular mechanisms involved in the killing of the parasite could aid in the
2022 College of Science Research Symposium effective vaccine design against Tv. It is known that a type of white blood cell called neutrophils (PMN) are critical in the killing and clearance of Tv via a contact-dependent mechanism called trogocytosis in which PMN surround the parasite and take bites preceding parasite death. However, the molecular players involved in this contact-dependent process remain unknown. Since a previous study has shown that PMN cell surface receptor, FcYRIIa, is required for trogocytosis of breast cancer cells, we hypothesize that FcYRIIa may be required for the trogocytosis of Tv as well. To test this, we are designing FcYRIIa knock-out (KO) clones using mammalian promyelocytic cell line PLB-985. We differentiate these clones to become neutrophil- like cells (NLCs) and conduct cytolysis assays in which percent parasite killing is determined. Preliminary results show that percent parasite killing is significantly decreased in FcYRIIa KO clones compared to control NLCs. To further investigate where the fragments of trogocytosed Tv are localizing in PMN, we are conducting trogocytosis assays in which we co-incubate fluorescently labelled Tv and NLCs and observe them under the confocal microscope. Preliminary results suggest that some fragments of trogocytosed Tv are being localized to PMN lysosomes. 34. Investigating the growth of different Tritrichomas foetus strains at different pHs Bryan Ramirez Reyes, Frances Mercer, Advisor: Frances Mercer Tritrichomonas foetus is a unicellular flagellated protozoan parasite known to cause trichomoniasis in cattle. Trichomoniasis is a sexually transmitted disease known to affect the reproductive tract of cattle, resulting in abortion and reduced fertility. However, how the immune system combats trichomoniasis is under-characterized. In order to examine T. foetus and the immune response against it, we must first be able to cultivate it. T. foetus is most commonly grown in Diamonds media, however the optimal pH that each different strain grows in is unknown. In a literature search, we found that researchers typically grew T. foetus in a pH of 7.2. Trichomonas vaginalis, a similar parasite known to cause trichomoniasis in humans, is grown at a pH of 6.2. Meanwhile, no modification to the Diamonds media will result in a pH of 6.8. Therefore, we hypothesize that modification of Diamonds growth media to a pH of 7.2 will result in a greater cell count and viability, in comparison to pH 6.2 and 6.8. We will grow four different strains of T. foetus in Diamonds media at pHs of 6.2, 6.8 and 7.2, and compare the growth of these parasites over 7 consecutive days. The concentration of T. foetus will be determined via microscope using the hemocytometer and by flow cytometry. Data for strains KV-1 and BP-4 indicate a preference for more basic media, pH 6.8 and 7.2. Overall, these results will help determine the optimal pH modification to grow viable T. foetus cultures, which will help expand future T. foetus research. 35. Imidacloprid, not kaolin clay, affects floral visitation to watermelon flowers Emily J. Roman, Seth Kapp, Vonny M. Barlow, Joan M. Leong, Advisor: Joan M. Leong Production of melons in the desert valleys of southeastern CA requires management to control for silverleaf whitefly populations. Control of populations is typically done with a soil application of a neonicotinoid insecticide like imidacloprid. Neonicotinoids have been shown to cause a variety of sublethal effects in bees, which are the primary pollinators of watermelon crops. We examined whether the use of an alternative treatment, kaolin clay, as well as imidacloprid, influenced overall insect floral visitation, honey bee floral visitation and bee
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