ON SOIL METAGENOMICS 4th THÜNEN SYMPOSIUM - 11-13 December, 2019 - 4th Thünen Symposium on Soil ...
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4th THÜNEN SYMPOSIUM
ON SOIL METAGENOMICS
UNDERSTANDING AND
MANAGING SOIL MICROBIOMES
plus Workshop on Bioinformatic Tools
11–13 December, 2019
Braunschweig, Germany
PROGRAMME
www.soil-metagenomics.org
Scientific programme overview
Wednesday, 11 December Thursday, 12 December Friday, 13 December
08:30–09:55
Workshop I – Analyses of
metagenomes 09:00–11:00 09:00–10:15
p. 6 Biogeochemical Climate change
Coffee break transformations p. 10
10:15–12:20 10:15–11:00
Workshop I – Analyses of Microbial evolution and
metagenomes – continued adaptations
p. 8 p. 10
Industrial exhibition/coffee break Industrial exhibition/coffee break
11:15–13:00 11:15–12:30
Ecosystems biology Microbial evolution and
p. 6 adaptations – continued
p. 11
Industrial exhibition/lunch break* 12:30–13:30
13:00–13:10 Towards applied
Opening of the conference p. 6 p. 8 metagenomics
13:10–13:40 Industrial exhibition/lunch break p. 10
Opening lecture 13:30–13:35
Conference farewell
p. 6 p. 11
13:40–15:10 Industrial exhibition/lunch break*
Bioinformatics and modelling 14:00–15:45 14:00–15:35
Viruses, protists and other Workshop II – Beyond
p. 6 understudied groups 1 metagenomes
p. 11
Coffee break Coffee break
15:25–17:25
Statistics and analyses of p. 9 15:50–17:05
interactions Industrial exhibition/coffee break Workshop II – Beyond
16:00–17:00 metagenomes – continued
Viruses, protists and other
understudied groups 2
p. 9
17:00–19:15 p. 11
p. 7 Poster session and drinks
17:25–19:25 Key
Poster session and drinks p. 19 Workshop
p. 13 Scientific session
20:00–00:00 Social programme
Conference dinner Poster session
p. 27 * for workshop participants only
2 I 4th Thünen Symposium on Soil Metagenomics
Table of contents
Organisation and imprint ............................................................................................................ 4
Welcome note of the conference chair ........................................................................................ 5
Workshop programme
Wednesday, 11 December ................................................................................................... 6
Friday, 13 December ........................................................................................................... 11
Scientific programme
Wednesday, 11 December ................................................................................................... 7
Thursday, 12 December ....................................................................................................... 8
Friday, 13 December ........................................................................................................... 10
Poster sessions
Wednesday, 11 December ................................................................................................... 13
Thursday, 12 December ....................................................................................................... 19
Social programme ...................................................................................................................... 27
Sponsors and exhibitors ............................................................................................................. 28
Plan of venue ............................................................................................................................. 29
General information .................................................................................................................... 30
Index of invited speakers, chairs and authors .............................................................................. 35
11–13 December, 2019 I Braunschweig, Germany I 3
Organisation and imprint Venue Thünen Institute, Forum Bundesallee 50 I 38116 Braunschweig (DE) Conference website www.soil-metagenomics.org Conference chair Prof. Dr. Christoph C. Tebbe Thünen Institute of Biodiversity I Braunschweig (DE) Local organising committee Bei Liu Damini Anita Popovska Daniel Vasconcelos Rissi Sainur Samad Márton Szoboszlay Guangliang Zhang International scientific committee Petr Baldrian (CZ) Michael Pester (DE) Gabriele Berg (AT) James Prosser (GB) Martin Hartmann (CH) Yogesh Shouche (IN) Marcela Hernandez (DE) Kornelia Smalla (DE) Janet K. Jansson (US) Tim Urich (DE) Zhongjun Jia (CN) Jan Dirk van Elsas (NL) Sascha M. B. Krause (CN) Tim Vogel (FR) Folker Meyer (US) Conference organisation Conventus Congressmanagement & Marketing GmbH Elena Speier Carl-Pulfrich-Straße 1 I 07745 Jena (DE) Phone +49 3641 31 16-341 soil@conventus.de I www.conventus.de Design/layout Layout krea.tif–art UG (limited liability) Print siblog – Gesellschaft für Dialogmarketing, Fulfillment & Lettershop mbH Circulation 300 Editorial Deadline 25 November, 2019 4 I 4th Thünen Symposium on Soil Metagenomics
Welcome note of the conference chair
Dear colleagues,
Tremendous progress has been made since high-throughput DNA sequencing technologies entered
the field of soil microbiology, and the scientific community involved in soil omics studies is con-
tinuously growing. With that development, there is also higher demand for guiding young scientists
into this exciting field providing them with the best analytical tools available but also with a critical
understanding of what can be achieved and which problems will require more research.
Continuing the legacy of the first three Thünen Symposia, we would like to provide the opportunity for
participants to learn about the latest progress at the intersection of microbial bioinformatics and soil
ecology. Focus points of the 4th Symposium include the spatial organisation of soil microbial com-
munities and to the study of neglected groups, i.e. soil viruses and protists. The workshop flanking
the symposium provides the opportunity to learn about techniques for metagenomic analyses and
beyond (transcriptomes and proteome).
We are looking forward to meeting you in Braunschweig,
Prof. Dr. Christoph C. Tebbe
Conference chair
11–13 December, 2019 I Braunschweig, Germany I 5Workshop programme I Wednesday, 11 December
08:30–09:55 Workshop I Analyses of metagenomes
Chairs Márton Szoboszlay, Sainur Samad (Braunschweig/DE)
08:30 Welcome
Sainur Samad, Márton Szoboszlay (Braunschweig/DE)
08:40 Processing amplicon sequence data for the analysis of microbial
WS1 communities
Martin Hartmann (Zurich/CH)
10:15–12:20 Workshop I Analyses of metagenomes – continued
Chairs Márton Szoboszlay, Sainur Samad (Braunschweig/DE)
10:15 MG-RAST – analysing large scale soil metagenome
WS 2 Folker Meyer (Chicago, IL/US)
11:30 Building portable and reproducible workflows with Common Workflow
WS 3 Language (CWL)
Andreas Wilke (Chicago, IL/US)
13:00–13:10 Opening of the conference
13:00 Welcome address of the President of the Thünen Institute
Folkhard Isermeyer (Braunschweig/DE)
13:05 Welcome address conference chair
Christoph C. Tebbe (Braunschweig/DE)
13:10–13:40 Opening lecture
Chair Gabriele Berg (Graz/AT)
13:10 Metagenomics of the plant microbiome – beyond collecting stamps
KN 1 Jos Raaijmakers (Wageningen/NL)
13:40–15:10 Bioinformatics and modelling
Chair Timothy Vogel (Lyon/FR)
13:40 The future of microbiome research
KN 2 Nikos Kyrpides (Walnut Creek, CA/US)
14:10 New bioinformatic techniques for analysing large metagenomic datasets
KN 3 Folker Meyer (Chicago, IL/US)
6 I 4th Thünen Symposium on Soil MetagenomicsScientific programme I Wednesday, 11 December
14:40 Terrestrial metagenome database DB – a public repository of curated and
OR 1 standardised metadata
Felipe Borim Corrêa (Leipzig/DE)
14:55 OrtAn – a user friendly pipeline for semi-automated annotation of
OR 2 ecosystem processes
João P. Saraiva (Leipzig/DE)
15:25–17:25 Statistics and analyses of interactions
Chair James Prosser (Aberdeen/GB)
15:25 Statistical methods for the analyses of microbiome data
KN 4 Amy Willis (Seattle, WA/US)
15:55 Opportunities and limitations of microbial network analyses
KN 5 Karoline Faust (Leuven/BE)
16:25 What’s happening in the neighbourhood? The need for soil aggregatomics
OR 3 Christoph C. Tebbe (Braunschweig/DE)
16:40 Dynamics of active bacterial and fungal interactions in the assimilation of
OR 4 acidobacterial EPS in soil
Ohana Yonara de Assis Costa (Wageningen/NL)
16:55 Machine learning to predict ecosystem processes in complex communities
OR 5 from ‘omics’ data
Ulisses Nunes da Rocha (Leipzig/DE)
17:10 Agroforestry practices fail to mimic the aboveground-belowground
OR 6 interactions of Amazon mature forest
Márcio Leite (Wageningen/NL)
17:25–19:25 Poster session and drinks
(see page 13)
11–13 December, 2019 I Braunschweig, Germany I 7Scientific programme I Thursday, 12 December
09:00–11:00 Biogeochemical transformations
Chair Kornelia Smalla (Braunschweig/DE)
09:00 Nitrogen cycling microbial communities – from diversity to interactions and
KN 6 functions
Laurent Philippot (Dijon/FR)
09:30 Life, death and struggle of ammonium oxidizers in soil
KN 7 Zhongjun Jia (Nanjing/CN)
10:00 Niche specialisation in ammonia oxidisers – mechanisms, evidence, dreams
KN 8 and reality
James Prosser (Aberdeen/GB)
10:30 Diversity, activity and niches of aerobic methane-oxidizing bacteria
OR 7 Marc Dumont (Southampton/GB)
10:45 Response of soil organic carbon and microbial community structure to
OR 8 long-term different tillage patterns and straw returning
Tang-yuan Ning (Taian/CN)
11:15–13:00 Ecosystems biology
Chair Osnat Gillor (Midreshet Ben Gurion/IL)
11:15 Microbial communities and their activity at the root-soil interface of a
KN 9 coniferous forest soil respond to seasonal changes of metabolomes
Petr Baldrian (Prague/CZ)
11:45 Resistance and resilience of the soil microbiome to mechanical compaction
OR 9 Martin Hartmann (Zurich/CH)
12:00 Diverse oxygenic dentrifiers revealed in agricultural soils and lake sediments by
OR 10 ong-read amplicon sequencing of putative nitrix oxide dismutase (nod) genes
Baoli Zhu (Bayreuth/DE)
12:15 Molecular microbial indicators of land use change and their role in soil
OR 11 ecosystem services
Melanie Armbruster (Oxford/GB)
12:30 Ecosystem biology of a rare biosphere member
KN 10 Michael Pester (Braunschweig/DE)
8 I 4th Thünen Symposium on Soil MetagenomicsScientific programme I Thursday, 12 December
14:00–15:45 Viruses, protists and other understudied groups 1
Chair Michael Bonkowski (Cologne/DE)
14:00 Viruses from desert soils
KN 11 Evelien M. Adriaenssens (Norwich, Pretoria, GB/ZA)
14:30 The mycosphere virome – focus on mycocompetent Paraburkholderia species
KN 12 Jan Dirk van Elsas (Groningen/NL)
15:00 Stable-isotope probing and metagenomic analyses demonstrate individual
OR 12 host-virus interactions with soil methanotrophic communities
Sungeun Lee (Ecully/FR)
15:15 Elusive protists – the last frontier of soil microbiome. Examples of Cercozoa
KN 13 (Rhizaria) worldwide diversity
Anna Maria Fiore-Donno (Cologne/DE)
16:00–17:00 Viruses, protists and other understudied groups 2
Chair Michael Pester (Braunschweig/DE)
16:00 Unraveling the relative importance of ecological factors to predict the spatial
OR 13 diversity patterns of cercazoan communities in Europe
Florine Degrune (Berlin/DE)
16:15 Novel insights into the soil food web – Heterotrophic protists feeding on
OR 14 algae and fungi
Kenneth Dumack (Cologne/DE)
16:30 Acidobacteria – a globally abundant but unexplored phylum
OR 15 Katharina J. Huber (Braunschweig/DE)
16:45 Ktedonobacterales as early colonisers in soils of different ages following
OR 16 volcanic eruptions
Marcela Hernandez (Braunschweig/DE)
17:00–19:15 Poster session and drinks
(see page 19)
20:00 Conference dinner (Gastwerk Rodizio Braunschweig)
(see page 27)
11–13 December, 2019 I Braunschweig, Germany I 9Scientific programme I Friday, 13 December
09:00–10:15 Climate change
Chair Petr Baldrian (Prague/CZ)
09:00 Soil microbial community responses to climate warming from the tropical
KN 14 forest to the arctic tundra
Kostas Konstantinidis (Atlanta, GA/US)
09:30 Response of soil biota to 50 years of warming
OR 17 Tim Urich (Greifswald/DE)
09:45 Microbial responses to long-term permafrost soil thaw in Siberia – a combined
OR 18 mesocosm-metagenomic study
Susanne Liebner (Potsdam/DE)
10:00 Effect of free air carbon dioxide enrichment (FACE) on rhizospheric
OR 19 bacteria under fertilisation and in combination with drought
Sascha M. B. Krause (Shanghai/CN)
10:15–11:00 Microbial evolution and adaptations
Chair Marcela Hernandez (Braunschweig/DE)
10:15 Beyond sporulation – exploring survival strategies in soil microorganisms
KN 15 Dagmar Woebken (Vienna/AT)
10:45 Polysaccharide-producing bacteria as drivers for soil structure
OR 20 development
Stefanie Schulz (Neuherberg/DE)
11:15–12:30 Microbial evolution and adaptations – continued
Chair Marcela Hernandez (Braunschweig/DE)
11:15 Horizontal gene transfer driven microbial adaptation towards organic xenobiotic
KN 16 biodegradation – a targeted metagenomic approach
Dirk Springael (Leuven/BE)
11:45 Antibiotic resistance genes and mobile genetic elements – the metagenomic
KN 17 approach
Kornelia Smalla (Braunschweig/DE)
12:15 The response of soils microbiome to treated wastewater irrigation
OR 21 Osnat Gillor (Midreshet Ben Gurion/IL)
10 I 4th Thünen Symposium on Soil MetagenomicsScientific programme I Friday, 13 December
12:30–13:30 Towards applied metagenomics
Chair Zhongjun Jia (Nanjing/CN)
12:30 Forest-derived amendments increase fungal biomass and diversify microbiota
OR 22 of agricultural soils
Taina Pennanen (Helsinki/FI)
12:45 Effect of decomposing cover crops on composition of root-associated
OR 23 microbes and health of cash crop seedlings
Wietse de Boer (Wageningen/NL)
13:00 Metagenomics for plant and health solutions
KN 18 Gabriele Berg (Graz/AT)
13:30–13:35 Conference farewell
13:30 Farewell
Christoph C. Tebbe (Braunschweig/DE)
14:00–15:35 Workshop II – Beyond metagenomes
Chairs Sainur Samad, Márton Szoboszlay (Braunschweig/DE)
14:00 Welcome to the 2nd part
Sainur Samad, Márton Szoboszlay (Braunschweig/DE)
14:05 Network analysis
WS 4 Karoline Faust (Leuven/BE)
14:50 Metatranscriptomics
WS 5 Tim Urich (Greifswald/DE)
15:50–17:05 Workshop II – Beyond metagenomes – continued
Chairs Sainur Samad, Márton Szoboszlay (Braunschweig/DE)
15:50 Metaproteomics
WS 6 Katharina Riedel (Greifswald/DE)
16:35 Statistical analysis of microbiome data in R
WS 7 Amy Willis (Seattle, WA/US)
11–13 December, 2019 I Braunschweig, Germany I 11Poster Sessions The poster sessions are scheduled on Wednesday, 11 December from 17:25–19:25 and on Thursday, 12 December from 17:00–19:15. The following poster topics will be presented within these sessions: Poster session I I Wednesday, 11 December I 17:25–19:25 Bioinformatics and statistics P1–P5 see page 13 Evolution and adaptations P25–P27 see page 13 f. Soil systems ecology P42–P71 see page 14 ff. Spatial scales and gradients P74–P81 see page 18 Poster session II I Thursday, 12 December I 17:00–19:15 Environmental impacts P6–P24 see page 19 ff. Metagenomics of the plant microbiome P28–P41 see page 21 ff. Soil viruses and protists P72–P73 see page 23 Structural and functional diversity P82–P105 see page 23 ff. Display and removal of posters Posters can be hung up on Wednesday, starting at 12:20 and have to be removed by Thursday, 19:15 (after the last poster session). Posters not removed by this time will be discarded. The poster sessions will take place in the basement and the room “Präsidiumssaal” at the Forum. Please follow the signs on-site! Poster prizes The three best posters will be rewarded. The best poster awards will be presented in the final session on Friday, starting at 13:30. 12 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Wednesday, 11 December I 17:25–19:25
Bioinformatics and statistics I P1–P5
P1
Functional Subset Microbial Communities (FSCs) – an approach to predict ecosystem processes
and microbial interactions
João P. Saraiva, Anja Worrich, Canan Karakoc, Antonis Chatzinotas, Florian Centler
Ulisses Nunes da Rocha (Leipzig/DE)
P2
PredicTF – a tool to predict bacterial transcription factors in complex microbial communities
Lummy Maria Oliveira Monteiro (Leipzig/DE, Ribeirão Preto/BR), João P. Saraiva (Leipzig/DE)
Marta Gomes (Braga/PT), Rodolfo Brizola Toscan, Samuel Eziuzor, Lorenz Adrian
Carsten Vogt (Leipzig/DE), Rafael Silva-Rocha (Ribeirão Preto/BR)
Ulisses Nunes da Rocha (Leipzig/DE)
P3
FunSeq – an automated and flexible pipeline for analysing high-throughput sequencing data on
functional genes
Sainur Samad (Braunschweig/DE, Wageningen/NL), Mattias de Hollander (Wageningen/NL)
Christoph C. Tebbe (Braunschweig/DE), Paul L.E. Bodelier (Wageningen/NL)
P4
Shedding light on the tag switching problem in Illumina sequencing technology for amplicon data
Daniel Kumazawa Morais, Inaki Odriozola, Petr Baldrian, Tomas Vetrovsky (Prague/CZ)
P5
Genobrowser, a powerful tool for environmental genomics
Philippe Ortet, Catherine Santaella, Thierry Heulin, Wafa Achouak
Mohamed Barakat (Saint Paul lez Durance/FR, Aix en Provence/FR)
Evolution and adaptations I P25–P27
P25
Carotenoid production in soil Acidobacteria
Cristine Chaves Barreto, Otavio H. Bezerra Pinto, Gisele Rodrigues
Rosiane Andrade da Costa (Brasilia/BR)
11–13 December, 2019 I Braunschweig, Germany I 13Poster Sessions I Wednesday, 11 December I 17:25–19:25 P26 The evolution and phylogenetic distribution of cellulases in natural environments Bing Song, Fernando Tria, William Martin (Duesseldorf/DE) P27 Different metabolic adaptations enable drought survival and fast reactivation of microorganisms in desert biological soil crusts as revealed by population-resolved metagenomics and transcriptomics Dimitri Meier, Staffanie Imminger, Arno Schintlmeister (Vienna/AT) Osnat Gillor (Midreshet Ben Gurion/IL), Dagmar Woebken (Vienna/AT) Soil systems ecology I P42–P71 P42 Impact of deforestation and reforestation on tropical soil microbiome Timofey Chernov, Alena Zhelezova (Moscow/RU) P43 Dynamics of prokaryotic communities during the long-term podzol evolution – from the zero-stage to the climax Ekaterina Ivanova (St. Petersburg/RU, Moscow/RU), Elizaveta Pershina, Anastasia Kimeklis Alexey Zverev, Grigorii Gladkov, Evgeny Andronov, Evgeny Abakumov (St. Petersburg/RU) P44 Unraveling anaerobic benzene degradation under nitrate-reducing conditions Felipe Borim Corrêa, Samuel Eziuzor, Shuchan Peng (Leipzig/DE) Júnia Schultz (Rio de Janeiro/BR), Lorenz Adrian, Sabine Kleinsteuber, Carsten Vogt Ulisses Nunes da Rocha (Leipzig/DE) P45 Response of soil bacterial phoD gene abundance and expression to application of phosphate fertilizer in grassland columns Israel Ikoyi, Achim Schmalenberger (Limerick/IE) P46 Comparison of microbial soil communities from prehistorically fortified hills and an archaeological excavation site near Schöps (Thuringia, Germany) by 16S-r-RNA profiling Michael Köhler, Nancy Beetz, Mike Günther (Ilmenau/DE), Tim Schüler, Jialan Cao (Weimar/DE) P47 Bacteria decomposing fungal biomass – genomic and proteomic analysis of enzymatic machinery Vendula Brabcová, Robert Starke, Daniel Morais, Tomáš Větrovský, Petr Baldrian (Prague/CZ) 14 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Wednesday, 11 December I 17:25–19:25
P48
Global fungal distribution is largely driven by climate
Tomas Vetrovsky, Petr Kohout, Martin Kopecký, Antonín Macháč, Matěj Man
Clémentine Lepinay (Prague/CZ), Adina Howe (Ames, IA/US), Joshua Ladau (San Francisco, CA/US)
Kabir Peay (Stanford, CA/US), David Storch, Jan Wild, Petr Baldrian (Prague/CZ)
P49
Influence of prolonged snow cover on soil fungal communities in alpine soils
Maraike Probst, Anuscha Telagathoti, Felipe Galleguillos, Ursula Peintner (Innsbruck/AT)
P50
Slope exposure shapes fungal deadwood decaying communities of Norway spruce and their
interactions with nitrogen-fixing bacteria – a 2-year mesocosm study
Maraike Probst (Innsbruck/AT), María Gómez-Brandón (Vigo/ES), José Siles (Berkeley, CA/US)
Ursula Peintner, Tommaso Bardelli (Innsbruck/AT), Markus Egli (Zurich/CH), Heribert Insam
Judith Ascher-Jenull (Innsbruck/AT)
P51
Competitive exclusion of asphalt-exposed sediment microbiomes by opportunistic sulfate reducers
following sulfate input
Antonios Michas (Neuherberg/DE, Freising-Weihenstephan/DE), Mourad Harir, Anne Schöler
Philippe Schmitt-Kopplin (Neuherberg/DE), Tillmann Lueders (Bayreuth/DE)
Dimitris G. Hatzinikolaou (Attica/GR), Ralf Rabus (Oldenburg/DE)
Michael Schloter (Neuherberg/DE, Freising-Weihenstephan/DE)
P52
Effects of forage grasses N-fertilized on total microbial community and nitrification genes in
tropical soil
Letusa Momesso (Wageningen/NL, Botucatu/BR), Carlos Alexandre Costa Crusciol (Botucatu/BR)
Marcio Fernandes Alves Leite (Wageningen/NL), Lucas Pecci Canisares (Campinas/BR)
Luiz Gustavo Moretti (Wageningen/NL, Botucatu/BR), Eiko Eurya Kuramae (Wageningen/NL)
P53
Insight into genomic potential of uncultivated bacteria associated with decomposing wood
Vojtěch Tláskal, Tomáš Větrovský (Prague/CZ), Ulisses Nunes da Rocha, João P. Saraiva
Lummy M. O. Monteiro (Leipzig/DE), Petr Baldrian (Prague/CZ)
P54
Generalists versus specialists – assessing the nutritional guilds of fungal decomposers in forest litter
Ruben Lopez-Mondejar, Camelia Algora, Petr Baldrian (Prague/CZ)
11–13 December, 2019 I Braunschweig, Germany I 15Poster Sessions I Wednesday, 11 December I 17:25–19:25 P55 Responses of soil microbial communities to warming in sub-Arctic tundra and forest ecosystems Manoj Kumar, Sari Stark (Rovaniemi/FI), Marja Tiirola (Jyväskylä/DE), Johan Olofsson (Umeå/SE) Minna Männistö (Rovaniemi/FI) P56 The microbial community response to seasonality and soil metabolomes in temperate and boreal Norway spruce forests Zander Human, Martina Štursová, Diana Navrátilová (Prague- Krc/CZ), Sunil Mundra Håvard Kauserud (Oslo/NO), Mary Lipton, Stephen Callister, Young-Mo Kim (Richland, WA/US) Petr Baldrian (Prague- Krc/CZ) P57 Increasing competitive suppression of pathogens by stimulating saprotrophic fungi in the rhizosphere Anna Clocchiatti, S. Emilia Hannula, Wietse de Boer (Wageningen/NL) P58 A/synchrony of energy and carbon losses during microbial growth in soil – Microbiome or single population? Ruirui Chen (Nanjing/CN), Sergey Blagodatsky (Stuttgart/DE) Evgenia Blagodatskaya (Halle a. d. Saale/DE) P59 Plant – animal – bacterial interactions in salt marsh soils in response to climate change Diana Edisa Garcia Hernandez (Groningen/NL), Matty P. Berg (Groningen/NL, Amsterdam/NL) Chris Smit, Joana Falcao Salles (Groningen/NL) P60 Effects of biochar application on soil bacterial communities in a laboratory biodegradation test Stefanie P. Glaeser, Burkard Wilske, Hossein Haghighi, Peter Kämpfer, Lutz Breuer (Gießen/DE) P61 Modeling “cheater” interactions in the soil microbial community using transparent soil-like substrates Eric Beaudoin, Elizabeth Shank, Kriti Sharma (Chapel Hill, NC/US) P62 Comparative analyse of biodiversity halophilic bacteria and eubacteria of some halophyte plants Salicornia and Atriplex cana Shahjahon Begmatov (Moscow/RU) 16 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Wednesday, 11 December I 17:25–19:25
P63
Climate smart agriculture practices influences soil bacterial community composition in cereal
systems of Indo-Gangetic plains of India
Madhu Choudhary, Hanuman Jat, Ashim Datta, Parbodh Sharma (Karnal/IN)
Mangi Jat (New Delhi/IN)
P64
Change in the taxonomic structure of the microbiome of podzolic soil with waterlogging
Grigorii Gladkov, Ekaterina Ivanova, Anastasia Kimeklis, Alexey Zverev, Evgeny Andronov
Evgeny Abakumov (St. Petersburg/RU)
P65
Seasonal shifts of soil prokaryotic community structure in boreal climate
Alena Zhelezova, Timofey Chernov (Moscow/RU)
P66
Fungal communities in snow-covered alpine soil – Is there a typical core community of
cultivable fungi?
Anusha Telagathoti, Maraike Probst, Felipe Galleguillos, Johannes Falbesoner, George Walch
Maria Knapp, Ursula Peintner (Innsbruck/AT)
P67
Effects of wood-derived soil amendments on root-associated fungal communities of oat (Avena
sativa) throughout the growing season
Karoliina Huusko, Anna-Reetta Salonen, Outi-Maaria Sietiö, Jussi Heinonsalo (Helsinki/FI)
P68
Microecological evolution in the process of heavy metal contaminated soil remediation
Yakui Chen, Yinhuan Zhou, Diannan Lu (Beijing/CN)
P69
Effect of simulated nitrogen and sulphur deposition on soil microbial community and enzymatic
activity in mountain forests
Michal Choma, Karolina Tahovská, Eva Kaštovská, Jiří Bárta (Ceske Budejovice/CZ)
Filip Oulehle (Prague/CZ)
P70
Dynamics and persistence of Acinetobacter in soils amended with manure
Eduardo Pérez-Valera, Dana Elhottová (Ceske Budejovice/CZ)
P71
Prokaryotic community of cow manure in process of substrate succession
Dana Elhottová, Eduardo Pérez-Valera (Ceske Budejovice/CZ)
11–13 December, 2019 I Braunschweig, Germany I 17Poster Sessions I Wednesday, 11 December I 17:25–19:25 Spatial scales and gradients I P74–P81 P74 Compartmentalisation of microbial communities into microhabitats at the spatial scale in a primeval temperate forest – everything “is not” everywhere Sarah Piché-Choquette, Vojtěch Tláskal, Petr Baldrian (Prague/CZ) P75 Linking 16S rRNA to amoA gene taxonomy reveals environmental distribution of ammonia-oxidising archaea in peatland soils Haitao Wang (Greifswald/DE), Alexandre Bagnoud (Vienna/AT), Micha Weil (Greifswald/DE) Christa Schleper (Vienna/AT), Tim Urich (Greifswald/DE) P76 Resistance of soil microbial communities to environmental changes in an alpine elevation gradient Francisco I. Pugnaire (Almeria/ES), Richard Michalet (Bordeaux/FR), Rabindra Parajuli (Kathmandu/NP) Jose Antonio Morillo (Almeria/ES) P77 Environmental factors driving the global fungal distribution Clémentine Lepinay (Prague/CZ), Martin Kopecký (Průhonice/CZ), Antonín Machač (Prague/CZ) Matěj Man, Jan Wild (Průhonice/CZ), Petr Baldrian, Petr Kohout, David Storch Tomáš Větrovský (Prague/CZ) P78 Environmental factors shape bacterial communities across a diverse mountain landscape Johanna Mayerhofer, Daniel Wächter, Reto Giulio Meuli (Zurich/CH), Lukas Kohli, Tobias Roth (Reinach/CH), Franco Widmer (Zurich/CH) P79 Shifts in soil microbial community structure and metabolism along elevation gradients in tropical forests Outi-Maaria Sietiö, Kevin Mganga, Angela Martin Vivanco, Nele Meyer, Subin Kalu, Sylwia Adamczyk Petri Pellikka (Helsinki/FI), Christopher Poeplau (Braunschweig/DE), Kristiina Karhu (Helsinki/FI) P80 Microbial diversity in montane and subalpine soils of the Eastern Alps Theresa Stoeger, Nadine Praeg, Paul Illmer (Innsbruck/AT) P81 Effect of plant roots and root hairs on spatial patterns of soil microbial communities Damini, Márton Szoboszlay (Braunschweig/DE), Minh Ganther, Mika Tarkka (Halle a. d. Saale/DE) Christoph C. Tebbe (Braunschweig/DE) 18 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Thursday, 12 December I 17:00–19:15
Environmental impacts I P6–P24
P6
Effect of mining on the initial soil microbiomes in polar ecosystems in surroundings of Nadym,
Western Siberia, Russia
Anastasiia Kimeklis, Grigorii Gladkov, Alexei Zverev , Elizaveta Pershina, Ekaterina Ivanova
ArinaKichko, Evgeny Andronov, Evgeny Abakumov (St. Petersburg/RU)
P7
Trees living on the edge – root fungal communities after 5 years of summer drought
Fabian Weikl, Karin Pritsch (Neuherberg/DE)
P8
Soil microbial community interactions are context-dependent in the Qinghai-Tibet Plateau wetland
Márcio Leite (Wageningen/NL), Xue Zhou, Zhenqing Zhang, Lei Tian, Lina Ma
Xiujun Li (Changchun/CN), Johannes A. van Veen, Eiko E. Kuramae (Wageningen/NL)
Chunjie Tian (Changchun/CN)
P9
Greenhouse gas emissions and soil microbial activity following different digestate fertilisation in
crop cultivation
Modupe Doyeni, Vita Tilvikiene, Skaidre Suproniene (Kaunas/LT)
P10
Quantifying gene abundance in soils – the importance of mastermix selection
Aoife Duff (Wexford/IE), Madeline Giles (Dundee/GB), Syaliny Ganasamurthy
Sergio Morales (Dunedin/NZ), Fiona Brennan (Wexford/IE)
P11
Assessing the impact of the use of urease and nitrification inhibitors on microbial community
composition, diversity and function in grassland
Aoife Duff, Patrick Forrestal, Fiona Brennan (Wexford/IE)
P12
Rhizosphere microbiota drives biogeochemical arsenic transformations in rice paddies amended
with sulfate
Sarah Zecchin (Milano/IT), Jiajia Wang (Beyreuth/DE), Maria Martin (Torino/IT)
Marco Romani (Pavia/IT), Britta Planer-Friedrich (Beyreuth/DE), Lucia Cavalca (Milano/IT)
P13
Effects of climate change on soil microbiome
Isabel Silva (Aveiro/PT), Marta Alves (Aveiro/PT, Porto/PT), Catarina Malheiro
A. Rita R. Silva Susana Loureiro (Aveiro/PT), Isabel Henriques (Aveiro/PT, Coimbra/PT)
M. Nazaret González-Alcaraz (Aveiro/PT)
11–13 December, 2019 I Braunschweig, Germany I 19Poster Sessions I Thursday, 12 December I 17:00–19:15 P14 Drought-induced Scots Pine forest dieback – understanding the hidden role of the soil microbiome Astrid Jäger, Martin Hartmann, Johan Six, Emily F. Solly (Zurich/CH) P15 Influence of edaphic and pollution gradients on the structure of native microbiota in semiarid mine tailings Yolanda Risueño (Cartagena/ES), Cesar Petri (Málaga/ES) Francisco J. Jiménez-Cárceles (Murcia/ES), María Nazaret González-Alcaraz (Aveiro/PT) Julia Muñoz-Fructuoso, Héctor M. Conesa (Cartagena/ES) P16 Description of post-mine soil succession in Syberia using 16S rDNA analysis Aleksei Zverev, Anastasia Kimeklis, Evgenii Andronov, Evgenii Abakumov (St. Petersburg/RU) P17 Capturing the unknown microbial players and genes involved in the cycling of arsenic and antimony in Northern peatland soils Katharina Kujala (Oulu/FI) P18 Soil bacteria abundance and N2O fluxes in bioenergy crop Clovis Borges (Piracicaba/BR), Oriel Kölln (Campinas/BR), Beatriz Borges, Henrique Franco Siu Tsai (Piracicaba/BR) P19 Decoupling of microbial community composition and functions in Artcic peat soil exposed to short term warming Sizhong Yang, Susanne Liebner, Fabian Horn (Potsdam/DE), Mette Marianne Svenning AlexanderTveit (Tromsø/NO) P20 Microbial diversity in bulk and rhizosphere soil of Ranunculus glacialis along a high-alpine altitudinal gradient Nadine Praeg (Innsbruck/AT), Harald Pauli (Vienna/AT), Paul Illmer (Innsbruck/AT) P21 Dynamics of the microbial communities in Amazon soils under temperature and moisture variations Aline Giovana Franca, Andressa Monteiro Venturini, Júlia Brandao Gontijo, Luis Fernando Merloti Siu Mui Tsai (Piracicaba/BR) 20 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Thursday, 12 December I 17:00–19:15
P22
Plant microbiomes and interactions networks as tools for safer-by-design approach of nanomaterials
Catherine Santaella, Philippe Ortet, Mohamed Barakat
Mohamed Hamidat (Saint Paul lez Durance/FR, Aix en Provence/FR), Blanche Collin
Mélanie Auffan (Aix en Provence/FR), Thierry Heulin
Wafa Achouak (Saint Paul lez Durance/FR, Aix en Provence/FR)
P23
Developing an environmental risk assessment strategy for phage biocontrol in agriculture
Márton Szoboszlay (Braunschweig/DE), Dominique Holtappels, Jeroen Wagemans
Rob Lavigne (Leuven/BE), Christoph C. Tebbe (Braunschweig/DE)
P24
Methane emitting microbiomes in drained and re-wetted fens of Northern Germany
Micha Weil, Haitao Wang, Diana Münch (Greifswald/DE), Daniel Köhn, Anke Günther
Gerald Jurasinski (Rostock/DE), John Couwenberg, Tim Urich (Greifswald/DE)
Metagenomics of the plant microbiome I P28–P41
P28
Bacterial profile and biodiversity of Bambara groundnut rhizospheric soil
Caroline Fadeke Ajilogba, Tsholofelo Mothupi, Lethabo Gaebee
Olubukola Oluranti Babalola (Mmabatho/ZA)
P29
Optimising crop rotation cycles that support natural mycorrhization of vegetables
Sannakajsa Velmala, Aku Pakarinen, Hannu Fritze (Helsinki/FI), Pirjo Kivijärvi (Jyväskylä/FI)
Terhi Suojala-Ahlfors (Turku/FI), Taina Pennanen (Helsinki/FI)
P30
Comparison of microbiomes from composts with different disease suppressiveness
Johanna Mayerhofer (Zurich/CH), Thomas Oberhänsli, Eileen Enderle, Barbara Thürig (Frick/CH)
Stefanie Lutz, Christian Ahrens (Wädenswil/CH), Franco Widmer (Zurich/CH)
P31
Long-term fertilisation rather than plant species shapes rhizosphere and bulk soil prokaryotic
communities in agroecosystems
Mikhail Semenov (Moscow/RU)
11–13 December, 2019 I Braunschweig, Germany I 21Poster Sessions I Thursday, 12 December I 17:00–19:15 P32 Protective role of endophytic bacterium Rhizobium Radiobacter to Solanum Lycopersicum under arsenic toxicity Imran Ahmad, Jagriti Shukla, Preeti Devi, Manoj Kumar (Lucknow/IN) P33 Elucidating the temporal dynamics and potential function of secondary metabolites in the plant rhizosphere Barak Dror (Rishon LeZion/IL, Rehovot/IL), Edouard Jurkevitch (Rehovot/IL) Eddie Cytryn (Rishon LeZion/IL) P34 Enrichment of lignin-transforming enzymes on soil-derived lignocellulolytic microbial consortia: a metagenomic approach Laura Andrea Díaz García, Diego Javier Jiménez Avella (Bogotá/CO) P35 How important is the composition of the cell wall for the root microbiome? Rakesh Santhanam, Rayko Halitschke, Dapeng Li, Ian T. Baldwin, Karin Groten (Jena/DE) P36 Composition of soil and root-associated microbial communities along plant diversity gradient Lenka Meszarosova (Prague /CZ), Eliska Kutakova, Zuzana Munzbergova (Pruhonice/CZ, Prague/CZ) Petr Baldrian (Prague/CZ) P37 The quest into the unknown – using culture-independent data to isolate the unculturable from the Fynbos biome Tersia Conradie, Karin Jacobs (Stellenbosch/ZA) P38 Effect of bacteria and AMF from wild genotype on growth and root microbiome assembly of commercial cultivars of chrysanthemum Cristina Rotoni, Márcio Fernandes Alves Leite, Lina Chuan Wong (Wageningen/NL) Cátia Pinto (Lisbon/PT), Eiko Kuramae (Wageningen/NL) P39 How soil texture and compaction affect root growth and rhizosphere microbial community assembly (Cercozoa, Protists) Lioba Rüger, Michael Bonkowski (Cologne/DE) 22 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Thursday, 12 December I 17:00–19:15
P40
Soil properties and host tree drive the microbial community structure along a North-South transect
across Europe
Jean de Dieu Habiyaremye (Halle a. d. Saale/DE, Leipzig/DE, Kigali/RW), Kezia Goldmann
Thomas Reitz, Sylvie Herrmann (Halle a. d. Saale/DE)
François Buscot (Halle a. d. Saale/DE, Leipzig/DE)
P41
Microbial abundance associated with mitigation of N2O in land use under soybean crop
Beatriz Borges, Clovis Borges (Piracicaba/BR), Henrique Debiasi, Julio Franchini (Londrina/BR)
Siu Tsai (Piracicaba/BR)
Soil viruses and protists I P72–P73
P72
The impact of soil viruses on microbial community structure and disease suppression
Simone Weidner (Wageningen/NL), Bas E. Dutilh (Utrecht/NL)
Britt Koskella (Wageningen/NL; Berkeley/US), Paolina Garbeva, Jos M. Raaijmakers
Mark P. Zwart (Wageningen/NL)
P73
New insights on diversity and ecology of Myxomycetes from a large-scale DNA metabarcoding study
Oleg Shchepin (Greifswald/DE, St. Petersburg/RU), Martin Schnittler (Greifswald/DE)
Yuri Novozhilov (St. Petersburg/RU)
Structural and functional diversity I P82 –P105
P82
Functional metagenomic based assessment of triclosan resistance determinants revealed
selective enrichment of triclosan resistance genes in presumably triclosan rich environments
Raees Khan (Rawalpindi/PK), Seon-Woo Lee (Busan/KR)
P83
Land use and its influence on soil bacterial diversity
Abisola Regina Sholeye, Omena Bernard Ojuederie, Olubukola Oluranti Babalola (Mmabatho/ZA)
P84
Effect of termite bioturbation on fungal diversity and community structure as revealed by shotgun
sequencing
Stephanie Cromwell, Ben Jesuorsemwen Enagbonma, Adenike Eunice Amoo
Olubukola Oluranti Babalola (Mmabatho/ZA)
11–13 December, 2019 I Braunschweig, Germany I 23Poster Sessions I Thursday, 12 December I 17:00–19:15 P85 Functional metagenomics of microorganisms in agricultural soils Katja Kozjek, Dag Ahrén, Katarina Hedlund (Lund/SE) P86 The impact of seasonal dynamics on plant-microbial interactions in a temperate coniferous forest soil unveiled by multi-metaOMICs Robert Starke, Rubén López Mondéjar, Zander Human, Diana Navrátilová Martina Štursová (Prague/CZ), Stephen Callister, Mary Lipton (Richland/US), Christa Pennacchion Igor Grigoriev (Walnut Creek/US), Petr Baldrian (Prague/CZ) P87 Understanding the soil bacterial communities by means of long-term agricultural field trials in Flanders Lisa Joos, Caroline De Tender (Merelbeke/BE, Ghent/BE), Sarah Ommeslag (Merelbeke/BE) Lieven Clement (Ghent/BE), Jane Debode, Bart Vandecasteele (Merelbeke/BE) P88 Soil microbial diversity as a function of soil types and soil forms PeiPei Xue, Alex McBratney, Budiman Minasny, Vanessa Pino (Sydney/AU) P89 The impact of Ag2S-NP exposure in soil microbiome – a 16S rRNA gene-based metagenomic analysis Sara Cristiana Lopes Peixoto, Zahra Khodaparast, Susana Loureiro (Aveiro/PT) Isabel Henriques (Coimbra/PT) P90 Microbial carbon utilisation in temperate forest soil Tijana Martinovic, Tereza Mašínová, Martina Štursová, Petr Baldrian (Prague/CZ) P91 Sequencing depth has more effect than DNA extraction on soil bacterial richness discovery Concepcion Sanchez-Cid (Ecully/FR, Charbonnières-les-Bains/FR), Romie Tignat-Perrier Laure Franqueville (Ecully/FR), Laurence Delaurière (Charbonnières-les-Bains/FR) Trista Schagat (Madison, WI/US), Timothy M. Vogel (Ecully/FR) P92 Tracing carbon flow and associated active microbial community in a thermophilic maize-fed fermenter by time-resolved RNA stable isotope probing Nadine Rüppel, Kai Schäfer (Hannover/DE), Franz Buegger (Neuherberg /DE) Marcus Horn (Hannover/DE), Franz Buegger (Neuherberg /DE) 24 I 4th Thünen Symposium on Soil Metagenomics
Poster Sessions I Thursday, 12 December I 17:00–19:15
P93
Unveiling the plant-beneficial function contributing genes present in termite mound soil
Ben Jesuorsemwen Enagbonma, Olubukola Oluranti Babalola (Mmabatho/ZA)
P94
Bacterial consortium and metabolites shape microbial diversity and functions in soybean rhizosphere
Luiz Gustavo Moretti (Wageningen/NL, Botucatu/BR), Carlos Alexandre Costa Crusciol (Botucatu/BR)
Márcio Fernandes Alves Leite (Wageningen/NL), Letusa Momesso
Ohana Yonara Assis Costa (Wageningen/NL, Botucatu/BR), Mariangela Hungria (Londrina/BR)
Eiko Eurya Kuramae (Wageningen/NL, Londrina/BR)
P95
Microbial activity and community in long-term organic and conventional farming systems
Krista Peltoniemi, Sannakajsa Velmala, Hannu Fritze, Taina Pennanen (Helsinki/FI)
P96
The rare soil biosphere reveals similar habitat associations as full soil microbiomes in undisturbed
ecosystems
Florian Gschwend, Martin Hartmann, Anna Hug, Andreas Gubler, Reto G. Meuli (Zurich/CH)
Beat Frey (Birmensdorf/CH), Franco Widmer (Zurich/CH)
P97
Searching for novel terpene-specific cytochromes P450 in soil bacteria
Hannah Lloyd, Deani Cooper, Alexander Ferrazzoli, Susan Lovett
Thomas Pochapsky (Waltham, MA/US)
P98
Linking soil microbiome and microbial ionome to crop yield and quality in a long-term intensive
root crop trial
Michael Hemkemeyer, Sanja A. Schwalb, Clara Berendonk (Kleve/DE)
Stefan Geisen (Wageningen/NL), Stefanie Heinze (Bochum/DE)
Rainer Georg Joergensen (Witzenhausen/DE), Peter Lövenich (Cologne/DE)
Florian Wichern (Kleve/DE)
P99
Activity and abundance of ammonia oxidising bacteria and archaea in Bolivian soils
Alejandro Coca-Salazar (Liège/BE, Cochabamba/BO), Agnès Richaume (Villeurbanne/FR)
Monique Carnol (Liège/BE)
P100
Differential microbial composition of the rainbow Mountain Winikunka Cusco-Peru
Raquel Alvarez Ccoscco, Gretty Villena (La molina/PE), Carlos V. Landauro
José A. Castañeda-Vía (Lima/PE)
11–13 December, 2019 I Braunschweig, Germany I 25Poster Sessions I Thursday, 12 December I 17:00–19:15 P101 Bacterial communities associated to the decomposition of biopolymers from plant and fungal origin Camelia Algora, Petr Baldrian, Ruben Lopez-Mondejar (Prague/CZ) P102 Closing the loop – exploiting sustainable insect production to improve soil health Azkia Nurfikari, Marcel Dicke, Wietse de Boer (Wageningen/NL) P103 The specific prokaryotic microbiome of the rhizosphere wetland plant Carex acuta – mesocosm experiment with NPK addition Jiri Bárta, Keith Edwards, Tomas Picek, Jiri Mastny (Ceske Budejovice/CZ) P104 Impact of crop diversification on the abundance of structural and functional microbial genes in soil Bei Liu, Christoph C. Tebbe (Braunschweig/DE) P105 Managing postharvest disease in sugar beet by predictive approaches Peter Kusstatscher, Christin Zachow (Graz/AT), Karsten Harms, Johann Maier (Mannheim/DE) Herbert Eigner (Tulln/AT), Gabriele Berg, Tomislav Cernava (Graz/AT) 26 I 4th Thünen Symposium on Soil Metagenomics
Social programme
Conference dinner
We are pleased to welcome our participants to join our exclusive conference dinner on Thursday.
The location for this special occasion will be the „GASTWERK Rodizio“, a traditional Brazilian
restaurant based on 300 years of southern Brazilian culinary specialties. Escape to the land of
samba dancers, beautiful people, grand haciendas and of course the pampas. Celebrate the 4th
Thünen Symposium on Soil Metagenomics together with your friends and colleagues.
We would especially like to encourage young scientists to approach the more experienced gen-
eration in the frame of our conference dinner to network and enjoy this great Soil Metagenomics
community.
Date Thursday, 12 December
Time 20:00–24:00
Transfer a shuttle will pick you up outside of the
Thünen Forum and take you directly to
the “GASTWERK Rodizio”
(Mittelweg 7 l 38106 Braunschweig/DE)
a return shuttle will be provided to the
Best Western City-Hotel and the main train station Braunschweig
© Gastwerk Rodizio Braunschweig/635629979 l Chi_Chirayu l Shutterstock.com
Catering buffet and drinks (excl. of spiritis and cocktails) are included
from 22:00 the bar is self paying
Music DJ “Alex” will guide you through the evening
11–13 December 2019 I Braunschweig, Germany I 27Sponsors and exhibitors
Sponsors
Sercon Limited innovators in isotopes
Exhibitors
Bundesministerium für Bildung und Forschung – Bioökonomie
IMGM Laboratories GmbH
MP Biomedicals
Novogene Europe
Zymo Research Europe GmbH
Media cooperations
Elsevier
European Journal of Soil Biology
Soil Biology & Biochemistry
Applied Soil Ecology
Pedobiologia
Ecological Informatics
Erich Schmidt Verlag
Bodenschutz
John Wiley & Sons Ltd.
European Journal of Soil Science
Springer Nature
Microbial Ecology
State at Printing
28 I 4th Thünen Symposium on Soil MetagenomicsKEY
Check-in 1 Zymo Research Europe GmbH
Catering 2 Novogene Europe
Exhibition booths 3 MP Biomedicals
Poster sessions 4 IMGM Laboratories GmbH Lecture hall
Lecture hall 5 Bundesministerium für Bildung und
Forschung – Bioökonomie
stairs to basement
(further posters)
Lounge Cloakroom
Foyer
1 2
Room Room
Senatssaal Präsidiums-
saal
3 4 5
Media
check-in*
Main entrance
Plan of venue
* Laptops with internet access can also be used free of charge at our media check-in located within the exhibition area.
State at Printing
11–13 December, 2019 I Braunschweig, Germany I 29General information Certificate of attendance Certificates of attendance will be available on the last day of the symposium at the check-in. Please make sure to pick up your certificate before 14:00 on Friday as the check-in will be closed afterwards. Check-in The check-in desk can be found in the foyer of the Thünen forum. Cloakroom An unguarded cloakroom is located just outside the plenary hall and will be available free of charge. The conference organisation assumes no liability for items left or stolen. Industrial exhibition A specialised industrial exhibition accompanies the symposium. The exhibitors are looking forward to greeting you and to present their comprehensive range of innovative products. For a detailed layout of the exhibition plan see page 31. Please note that our sponsors and exhibitors take essential credits for making our symposium pos- sible. Internet Wireless Internet (WLAN) is available for all conference attendants. Log-in information can be ob- tained at the check-in desk. Laptops with internet access can also be used free of charge at our media check-in located within the exhibition area. Language The language of the symposium is English. Media check-in The media check-in can be found within the industrial exhibition. You will have the possibility to view and edit your presentation on-site. We strongly encourage you to load your presentation well in advance of the session in which you are speaking, but at the latest 30 min before your session starts. If you are speaking in the first session of the day, we encourage you to load your presentation the evening before. Please use a USB flash drive not protected with software. If your presentation includes additional files, such as a video file, please make sure that these files work properly and are available for transfer. Do not rely on having internet access available during your talk. Name badge Attendants and registered accompanying persons will receive a name badge at the check-in desk. Admittance to the conference and industrial exhibition is only allowed for those with a name badge. Name badges should be worn at all times. 30 I 4th Thünen Symposium on Soil Metagenomics
General information
Opening hours Wednesday Thursday Friday
Industrial exhibition 12:20–19:25 10:45–19:20 10:45–14:15
Poster exhibition 17:25–19:25 17:15–19:15 closed
Check-in 07:45–19:00 08:30–19:00 08:45–14:15
Media check-in 07:45–19:00 08:30–19:00 08:45–14:15
Presentation time
Please prepare your presentation for the allotted amount of time. Chairs are obliged to interrupt
you should you exceed your time limit. Time for presentations is assigned as follows (presentation
+ discussion):
1. Keynote presentation 25 + 5 minutes
2. Regular presentation 10 + 5 minutes
Submitting your presentation/technical information
Please prepare your presentation in 4:3 aspect ratio.
A presentation notebook with a PDF reader and MS Office PowerPoint 2016 will be provided. The use
of personal notebooks is possible – a technical supervisor will help you. Please provide an adapter
for VGA if necessary.
A notebook, remote control and laser pointer are available at the speaker’s podium at the lecture hall.
General terms and conditions
Please find our general terms and conditions at www.soil-metagenomics.org/gtc/.
Registration fees
Workshop, 11 & 13 December, 2019 55 EUR
Conference registration excluding conference dinner 385 EUR
Conference registration including conference dinner 415 EUR
Accompanying person conference dinner 50 EUR
Session planer
For current detailed information regarding the scientific programme please have a look at our ses-
sion planer at programm.conventus.de/sm2019.
Compose your individual programme and review it at any time on your way.
11–13 December, 2019 I Braunschweig, Germany I 31General information
Transportation to the venue
Public transportation
Braunschweig central station:
Taking bus line 461 or 411, exit at “Bundesallee”. From the bus stop “Bundesallee” the Thünen
Forum is within 15 minutes walking distance.
Daily shuttle bus service
Please note that these are approximate departure times. Please be at your departure point at least 5
minutes prior the scheduled departure time.
Wednesday. 11 December
Departure time Shuttle stop
07:10 Main train station Braunschweig
07:15 Main train station Braunschweig
07:25 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
07:30 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time Thünen Forum 08:00
Departure time Shuttle stop
11:40 Main train station Braunschweig
11:45 Main train station Braunschweig
11:55 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
12:00 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time Thünen Forum 12:30
Return shuttle from Thünen Forum
Departure time Shuttle stop
19:30 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time 20:05
Main train station Braunschweig
arrival time 20:15
19:30 Café Strupait (Magnitorwall 8)
arrival time 20:05
32 I 4th Thünen Symposium on Soil MetagenomicsGeneral information
Thursday, 12 December
Departure time Shuttle stop
07:35 Main train station Braunschweig
07:40 Main train station Braunschweig
07:45 Main train station Braunschweig
08:00 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
08:05 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
08:10 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time Thünen Forum 08:30
Shuttle from Thünen Forum
Departure time Shuttle stop
19:30 “GASTWERK Rodizio” (Mittelweg 7)
arrival time 20:00
Return shuttle from “GASTWERK Rodizio” (Mittelweg 7)
Departure time Shuttle stop
22:15 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time 22:45
Main train station Braunschweig
arrival time 23:00
23:45 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time 00:15
Main train station Braunschweig
arrival time 00:30
Friday, 13 December
Departure time Shuttle stop
07:35 Main train station Braunschweig
07:40 Main train station Braunschweig
07:45 Main train station Braunschweig
08:00 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
08:05 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
08:10 Best Western City-Hotel (Friedrich-Wilhelm-Straße)
arrival time Thünen Forum 08:30
Return Shuttle from Thünen Forum
Departure time Shuttle stop
13:30 Main train station Braunschweig
arrival time 14:15
17:15 Main train station Braunschweig
arrival time18:00
11–13 December, 2019 I Braunschweig, Germany I 33city map
THÜNEN Ins tute
5
4
1
6
2
3
© Stadt Braunschweig, Abt. Geoinforma on, 2010
1
3 Christmas Market • Burgplatz
2
3 Frühlings-Hotel • Bankplatz 7
3 Best Western City Hotel-Braunschweig • Friedrich-Wilhelm-Straße 26
4 Deutsches Haus • Ruhfäuchtenplatz 1
5 Gastwerk Rodizio • Mittelweg 7
6 Old townhall “Dornse” • Altstadtmarkt 7
34 I 4th Thünen Symposium on Soil MetagenomicsIndex of invited speakers, chairs and authors
A C E
A. van Veen, J. 19 Callister, S. 16, 24 E. Kuramae, E. 19
Abakumov, E. 14, 17, 19 Cao, J. 14 Egli, M. 15
Achouak, W. 13, 21 Castañeda-Vía, J. A. 25 Elhottová, D. 17
Adamczyk, S. 18 Cavalca, L. 19 Enagbonma, B. J. 23, 25
Adriaenssens, E. M. 9 Centler, F. 13 Enderle, E. 21
Adrian, L. 13, 14 Chatzinotas, A. 13 Eziuzor, S. 13, 14
Ahmad, I. 22 Chaves Barreto, C. 13
Ahrens, C. 21 Chen, R. 16 F
Ajilogba, C. F. 21 Chen, Y. 17 Falbesoner, J. 17
Algora, C. 15, 26 Chernov, T. 14, 17 Falcao Salles, J. 16
Alvarez Ccoscco, R. 25 Choma, M. 17 Faust, K. 7, 11
Alves Leite, M. F. 7, 15, 19 Choudhary, M. 17 Ferrazzoli, A. 25
22, 25 Chuan Wong, L. 22 Fiore-Donno, A. M. 9
Amoo, A. E. 23 Clement, L. 24 Franca, A. G. 20
Andrade da Costa, R. 13 Clocchiatti, A. 16 Franchini, J. 23
Andronov, E. 14, 17, 19 Coca-Salazar, A. 25 Franco, H. 20
Armbruster, M. 8 Collin, B. 21 Franqueville, L. 24
Ascher-Jenull, J. 15 Conesa , H. M. 20 Frey, B. 25
Auffan, M. 21 Conradie, T. 22 Fritze, H. 21, 25
Costa, O. Y. A. 25 Fritze, H. 21, 25
B Couwenberg, J. 21
Baldrian, P. 8, 10, 13, 14 Cromwell, S. 23 G
15, 16, 18 Cytryn, E. 22 Gaebee, L. 21
22, 24, 26 Galleguillos, F. 15, 17
Baldwin, I. T. 22 D Ganasamurthy, S. 19
Barakat, M. 13, 21 Damini18 Ganther, M. 18
Bardelli, T. 15 Datta, A. 17 Garbeva, P. 23
Bárta, J. 17 de Assis Costa, O. Y. 7, 25 Garcia Hernandez, D. E. 16
Beaudoin, E. 16 de Boer, W. 11, 16, 26 Geisen, S. 25
Berg, G. 6, 11, 26 de Hollander, M. 13 Giles, M. 19
Begmatov, S. 16 Debiasi, H. 23 Gillor, O. 8, 10, 14
Berendonk, C. 25 Debode, J. 24 Gladkov, G. 14, 17, 19
Bodelier, P. L. 13 Degrune, F. 9 Glaeser, S. P. 16
Bonkowski, M. 9, 22 Delaurière, L. 24 Gomes, M. 13
Borges, B. 20, 23 Devi, P. 22 Gontijo, J. B. 20
Borges, C. 20, 23 Díaz García, L. A. 22 González-Alcaraz, M. N. 20
Borim Corrêa, F. 7, 14 Doyeni, M. 19 Grigoriev, I. 24
Brabcová, V. 14 Dror, B. 22 Groten, K. 22
Brennan, F. 19 Duff, A. 19 Gschwend, F. 25
Brizola Toscan, R. 13 Duff, A. 19 Gubler, A. 25
Buegger, F. 24 Dumack, K. 9 Günther, A. 21
Buscot, F. 23 Dumont, M. 8 Günther, M. 14
11–13 December, 2019 I Braunschweig, Germany I 35Index of invited speakers, chairs and authors
H
Habiyaremye, J. d. D. 23 Kämpfer, P. 16 Lu, D. 17
Haghighi, H. 16 Karakoc, C. 13 Lueders, T. 15
Halitschke, R. 22 Karhu, K. 18 Lutz, S. 21
Hamidat, M. 21 Kaštovská, E. 17
Hartmann, M. 6, 8, 20, 25 KHAN, R. 23 M
Hatzinikolaou, D. G. 15 Kim, Y.-M. 16 Ma, L. 19
Hedlund, K. 24 Kimeklis, A. 14, 17, 20 Macháč, A. 15
Heinonsalo, J. 17 Kivijärvi, P. 21 Malheiro, C. 19
Heinze, S. 25 Kleinsteuber, S. 14 Man, M. 15, 18
Hemkemeyer, M. 25 Knapp, M. 17 Männistö, M. 16
Henriques, I. 19, 24 Köhler, M. 14 Martin, M. 19
Henriques, I. 19, 24 Kohli, L. 18 Martin, W. 14
Hernandez, M. 9, 10 Köhn, D. 21 Martin Vivanco, A. 18
Herrmann, S. 23 Kohout, P. 15, 18 Martinovic, T. 24
Heulin, T. 13, 21 Konstantinidis, K. 10 Mastny, J. 26
Horn, F. 20 Kopecký, M. 15, 18 Mayerhofer, J. 18, 21
Horn, M. 24 Koskella, B. 23 Meier, D. 14
Howe, A. 15 Kozjek, K. 24 Merloti, L. F. 20
Huber, K. J. 9 Krause, S. M. B. 10 Meszarosova, L. 22
Hug, A. 25 Kujala, K. 20 Meuli, R. G. 18
Human, Z. 16, 24 Kumar, M. 16, 22 Meyer, F. 6
Hungria, M. 25 Kumazawa Morais, D. 13 Meyer, N. 18
Huusko, K. 17 Kuramae, E. E. 15, 25 Michas, A. 15
Kyrpides, N. 6 Minasny, B. 24
I Momesso, L. 15, 25
Ikoyi, I. 14 L Monteiro, L. M. O. 15
Illmer, P. 18, 20 Ladau, J. 15 Morais, D. 14
Insam, H. 15 Landauro, C. V. 25 Morales, S. 19
Isermeyer, F. 6 Lavigne, R. 21 Moretti, L. G. 15, 25
Ivanova, E. 14, 17, 19 Lee, S. 9 Morillo, J. A. 18
Leite, M. 7, 19 Münch, D. 21
J Lepinay, C. 15, 18 Mundra, S. 16
Jäger, A. 20 Li, D. 22 Muñoz-Fructuoso, J. 20
Jat, M. 17 Li, X. 19 Munzbergova, Z. 22
Jia, Z. 8, 11 Liebner, S. 10, 20
Jiménez-Cárceles, F. J. 20 Lipton, M. 16, 24 N
Joergensen, R. G. 25 Liu, B. 26 Navrátilová, D. 16, 24
Joos, L. 24 Lloyd, H. 25 Ning, T.-y. 8
Jurasinski, G. 21 Lopez-Mondejar, R. 15, 26 Novozhilov, Y. 23
Loureiro, S. 19, 24 Nunes da Rocha, U. 7, 13
K Lövenich, P. 25 14, 15
Kalu, S. 18 Lovett, S. 25 Nurfikari, A. 26
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