JSPS RONPAKU (Dissertation Ph.D.) Program Abstracts of Dissertation for FY 2009
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JSPS RONPAKU (Dissertation Ph.D.)Program Abstracts of Dissertation for FY 2009 JSPS RONPAKU (Dissertation Ph.D.) Program Abstracts of Dissertation for FY 2009 Asian Program Division, JSPS http://www.jsps.go.jp/english/e-ronpaku/ Asian Program Division, Japan Society for the Promotion of Science Japan Society for the Promotion of Science
Message from JSPS The RONPAKU (Dissertation PhD) Program was inaugurated in 1978 as a centerpiece initiative within JSPS menu of activities directed to Asian and African countries. Under it, support is given to excellent Asian and African researchers who wish to earn a doctorate from a Japanese university by submitting a dissertation, without matriculating a doctoral course. Up to FY 2009, some 582 researchers have obtained their PhDs through the RONPAKU Program. This booklet contains abstracts from the 35 RONPAKU fellows who “graduated” from the program in FY 2009. We will be happy if this collection of their abstracts is of encouragement to current RONPAKU fellows and researchers from Asia and Africa who will be eligible to enroll in the program from next year. We look forward to the ties cultivated among RONKAKU fellows and Japanese researchers through participation in this program accruing to the building of a robust researcher network within the Asian and African community. Finally, it is with great expectation that we look forward to the future activities and contributions of the researchers who have earned their PhDs through this program. March 2011 Akie Hoshino Head Asian Program Division International Program Department Japan Society for the Promotion of Science
CONTENTS About RONPAKU Program 1 China Xiao ZHANG 4 8 India Gopakumar Raghavan PILLAI 10 Ashok KUMAR 12 M.Jerald Mahesh KUMAR 14 Indonesia Josephine Elizabeth SIREGAR 16 Ndan IMANG 18 Iin KURNIA 21 Rike YUDIANTI 23 Neni Trilusiana RAHMAWATI 25 Fransiscus Suramas REMBON 28 Ardianor 31 Korea Dong Hyun KIM 34 Byunggyu YU 36 Ki Youn KIM 38 Malaysia Mohamed Bin Gulam Hassan ASLAM 40 Faisal MOHD-YASIN 42 Mongolia Tseye-Oidov ODBAYAR 44 Philippines Lucille Velez ABAD 46 Evelyn Cuevas CREENCIA 48 Victoria Chavez LAPITAN 51 Iris Ann Galarosa MARTINEZ 53 Victor Salcedo SOLIMAN 56 Thailand Jankana BURANA-OSOT 60 Aroonlug LULITANOND 62 Suwannee LUPPANAPORNLARP 64 Chusit PRADABPET 65 Archawin ROJANAWIWAT 68 Siriphan SAENG-AROON 69 Vilasinee HIRUNPANICH 71 Chatchai MARNADEE 74 Kittisak SAWANYAWISUTH 77 Sawai WANGHONGSA 81 Vietnam Thi Van NGUYEN HA 84 Minh Cong NGUYEN 87
About RONPAKU Program The aim of JSPS's RONPAKU (Dissertation PhD) Program is to provide tutorial and financial support to promising young researchers in Asia and Africa who wish to obtain their PhD degrees from Japanese universities through the submission of a dissertation without going through a doctoral course. Grantees under the program (RONPAKU Fellows) are given the opportunity to visit their Japanese advisor once a year to receive direct supervision at the Japanese university where they will submit their PhD thesis. Since the program launched in 1978, 582 RONPAKU Fellows have obtained their PhDs under the program. The number of such fellows by country is as follows: Number of Counterpart Number of Ph. D. Country Current Fellows Organizations Awardees as of April 2010 Bangladesh UGC 9 3 CAS 18 2 China CASS 8 2 MOE (CSC) 22 16 India DST 26 2 DGHE 90 8 Indonesia LIPI 38 7 Korea NRF 62 19 Malaysia VCC 21 5 Mongolia MECS 1 8 Philippines DOST 72 10 Singapore* NUS 3 None Thailand NRCT 191 19 Vietnam VAST 18 17 Others 3 33 Total 582 151 * Indian counterpart organization (DST) is off the list nominating organization from FY 2008. * Singapore counterpart organization (NUS) is off the list nominating organization from FY 2001. 1
Eligibility Country This program is offered to researchers in the following countries ASIA (including Middle East countries) Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh*, Bhutan, Brunei, Cambodia, China*, Georgia, India, Indonesia*, Iran, Iraq, Israel, Jordan, Kazakhstan, South Korea*, Kuwait, Kyrgyz, Laos, Lebanon, Malaysia*, Maldives, Mongolia*, Myanmar, Nepal, Oman, Pakistan, the Philippines*, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syria, Tajikistan, Thailand*, Timor-Leste, Turkey, Turkmenistan, UAE, Uzbekistan, Vietnam*, and Yemen. AFRICA Algeria, Angora, Benin, Botswana, Burkina Faso, Burundi, Cameroon, Cape Verde, Central African Republic, Chad, Comoros, Republic of the Congo, Democratic Republic of the Congo, Cote d’Ivoire, Djibouti, Egypt*, Equatorial Guinea, Eritrea, Ethiopia, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Morocco, Mozambique, Namibia, Niger, Nigeria, Rwanda, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, Sudan, Swaziland, Tanzania, Togo, Tunisia, Uganda, Zambia and Zimbabwe * These ten countries have JSPS counterpart organizations that assist in applicant nomination and program implementation. Eligibility Each applicant for the Program must be a researcher who belongs to a university or research institute in the above-listed countries already holds a full-time position as a researcher in a university or reserve institution in his/her home country or will likely be appointed to such a position by 1 April of the starting year of the fellowship. (JSPS also treats Taiwanese and Palestinian researchers in this manner.) is under age 49 as of 1 April of the starting year of the fellowship. Number of Fellowships About 30~40 per year Duration of Fellowship Up to 5 years 2
JSPS Support RONPAKU Fellows may visit their Japanese host university once a year for a maximum period of 90 days for the purpose of studying under the supervision of their Japanese advisor. JSPS provides RONPAKU Fellows with a roundtrip international air ticket (economy class), maintenance allowance and medical/accidental insurance, and covers expenses related to dissertation submission during their stays in Japan. The Japanese advisor may visit the RONPAKU fellow's home university or research institution once a year for a maximum period of 30 days for the purpose of supervising RONPAKU Fellow's study. JSPS provides Japanese Advisors with a roundtrip air ticket (economy class) and maintenance allowance, and covers their visa issuance fees and supervising expenses during their stays in the fellow's country. During the fellow's stay in Japan, JSPS provides the Japanese Advisor with an allowance for supervising his/her study at the host institution. Contact Information We are happy to receive news of post-fellowship activities expanding their own initiative and opinion of our RONPAKU Program. Please email your comments to the JSPS RONPAKU Program. JSPS RONPAKU Program Asian Program Division International Program Department, JSPS Address: 8 Ichibancyo Chiyoda-ku, Tokyo 102-8472 JAPAN TEL: +81-(0)3-3263-2368 FAX: +81-(0)3-3234-3700 Email: ronpaku@jsps.go.jp 3
CHINA Damage and Interindustry Economic Impact of Drought and Water Scarcity in China: An Input-Output Analysis Xiao ZHANG CASS - 10401 Professor, Chinese Academy of Social Sciences, Institute of Quantitative and Technical Economics Japanese Advisor : Hikaru SAKURAMOTO Professor, Keio University China has faced many water resource problems including water pollution, flooding, and water scarcity combined with poor water distribution. These three issues have even existed at the same time and place before. In China, especially northern China, in terms of water issues, drought and water scarcity may be the most serious problems for the country’s development. Although China ranks number six in the world in terms of water volume, the amount of water that qualifies as a resource per capita is only about 25% of the average level in the world. The North China Plain accounts for over 66% of the country’s agricultural production (over half of is wheat and a third of is corn), however, about 80% of available water resources lie in southern China’s Yangtze River basin. Furthermore, in China, where grain production relies heavily on the availability of water resources, 80% of the grain is produced from irrigated land, whereas in the United States and India, the proportion is 20% and 60% respectively. The third cause for concern is that the efficiency of water use in China is comparatively low. It was estimated that 60% of water is lost in the irrigation process for various reasons such as evaporation in irrigation canals and on land, as well as during the flow through water supply facilities. Additionally, industrialization and urbanization have caused the demand for water to increase significantly. For instance, urban demand for water increased from 30% to 40% between 1999 and 2006. A pressing concern for China is the need for water for both grain production and economic safety. The motivation behind this study is to understand the inter-industry economic impact and damage caused by droughts and water resource scarcity. The input-output analysis framework served as the basis for 4
CHINA the approach adopted in this research because it provides diverse linkage measures, such as a backward and forward linkages as well as internal and external linkages between individual sectors of the economy. Furthermore, the input-output table and model can be used to analyze the relationship between intermediate input, final demand in monetary units and water use attached in physical units. Linkage measures can be used to identify which resources are most important for a country’s development and for which sectors because it is believed by some researches that encouragement of (concentration of scarce resources in) those sectors would lead to maximum economy-wide benefits, thereby stimulating economic development. In that case, the hypothetical extraction method is used as a linkage measure approach to capture the sectoral interdependence in this study. The primary objective of this study is to analyze the impact of droughts and water scarcity on all economic sectors in China. In order to reach this goal, the background and measure of the economic damage resulting from droughts and water scarcity are, respectively, reported and estimated. The second objective is to demonstrate the value of input-output tools and create assessing methods to estimate the linkage measure (indirect impacts) which include backward and forward linkages for sectors. The third objective is to devote a series of empirical analyses based on the linkage impact method and various scenarios in order to find relevant macro-economic policy implications. This study focuses on the economic impact of drought and water scarcity as well as the issues concerned and, in order to perform a thorough analysis, includes four parts. In part one the study’s motivation and approach are introduced. The motivation of the study comes from a need to understand the extent of economic losses due to natural disasters and water scarcity issues China has faced, as well as the general effects on the country’s society and economic system. There has never been a sector by sector or inter-sector study focusing on impact analysis. In fact, the key approach of this study is analysis based on an input-output model by which we can learn about the link between key sectors and other sectors, or links between different sectors in the economic system as a result of droughts and water scarcity losses. Additionally, this study will seek to understand the impact between key sectors and other sectors in the economic system due to changes in the efficiency of water use. Part 5
CHINA two gives estimates of damage caused by droughts and water scarcity, including grain and food damage and water supply damage. Part three is the key part of the study. Firstly, it explains the methodology used to determining linkage measures between losses in a key sector (agriculture sector) caused by droughts and the impact of the losses on other sectors. The section then describes the methodology, including the water use coefficient and inter-sectoral dependence linkages (internal and external effects) of water use, implemented in determining the linkage measure for water use among sectors. Secondly, it presents an empirical analysis of the damage caused by droughts and water scarcity. Thirdly, it divides a large combined sector (electricity, steam, hot water production & supply sector) into several sub- sectors in order to perform a detailed investigation. In part four, water use efficiency and policies on disaster risk reduction are discussed, including some international comparisons through scenario analyses. The four parts are composed of 10 chapters. The main findings and conclusions are (1) the estimate of damage and loss caused by droughts and water scarcity each year is an enormous figure and has an extreme impact on some sectors. The results estimate the total loss and linkage impact on agriculture to be RMB 272 billion and RMB 156 billion in 2001 and 2002, respectively. These figures account for 2.5% of GDP and 10.4% of GOV (gross output value) of agriculture in 2001, and 1.3% of GDP and 5.7% of GOV of agriculture in 2002. Droughts, including effects of flooding, especially impact the country’s poorer people and those living in rural areas for whom production activities rely heavily on water and natural conditions. In other words, droughts and water scarcity have had a very serious impact on growth and development in China. (2) Some key sectors, such as agriculture and electricity, use more water either per output or total volume. In addition, their total linkage impacts calculated (backward and forward) can be several times the value of its direct economic loss. Therefore, it is especially important for industries in those sectors to be monitored and encouraged to save water use by increasing water use efficiency. (3) When giving a careful consideration for all sectors, including the six sub-sectors divided from the sector of electricity, steam, hot water production & supply with regard to direct water use coefficient per output, the sub-sector of steam, hot water production & supply takes the number one slot, moving the agriculture sector to number two. Sub-sectors of thermal power generation and nuclear power generation are, respectively, No. 3 and No. 4. Regarding the external forward linkage of water use (transferring water from one sector to others by inputs), sub-sector of thermal power generation and sectors of chemicals and metals are, respectively, No. 2 and No.3. The conclusion of this finding is that the thermal power generation sub- sector is the top sector in water use compared with all other Chinese industrial sectors. In order to deal with the challenges presented by droughts and water scarcity in northern China, the sector’s allocation of any new thermal power 6
CHINA generation plant should be carefully monitored, and the sector’s water use efficiency must be improved upon. (4) The results of the analysis on the impact of transferring water between sectors in various scenarios show that although some sectors, such as electricity generation (thermal power generation), iron & steel, chemicals, petroleum processing, paper making, and textiles, are thought to use more water in their manufacturing processes, however, it is important to note that there are two different types of water transfer. It is not as easy to detect, but some sectors indeed use more water not only through their own demands, but also through inputs used in the production of goods coming from other sectors, such as food processing, clothing and textiles, which is considered to be importing water. The same is true about exporting water which occurs when goods such as electricity generation, chemicals, and iron &steel are transferred to other sectors. (5) The simulations yield different outcomes for the resulting total water use either in internal effect or external transferring under three different scenarios. Comparing with BaU scenario, in scenario two, direct water use was decreased by 30% in all 23 industrial sectors, while in scenario three the Japanese data describes direct water use in only four industrial sectors. In measuring the total decrease of water use in relevant sectors and the total amount of water transferred to and from sectors, the strategy of scenario three compared to that of scenario two appears to be more comprehensive, and therefore a better method. In terms of policy, this implies that to improve water efficiency in industrial sectors, it would be helpful to increasing water use efficiency and follow Japan’s example illustrated by the chemicals sector and the three other industrial sectors included in the data. 7
CHINA CSC - 10502 . 2 CMC 3 800 4 5 6 0.5 P2 7 0.5 1 2 8
CHINA . . 65 98 9.8 94 81 24 96 9.5 9
INDIA Decision Support for Water Management in the Vembanad Wetland System Gopakumar Raghavan PILLAI DST - 10304 Scientist, Centre for Water Resources Development and Management, Surface Water Division Japanese Advisor : Kaoru TAKARA Professor, Kyoto University The Vembanad wetland located on the southwest coast of India consists of the Vembanad backwater lake and deltaic regions of the Achencoil, Pamba, Manimala, Menachil and Muvattupuzha rivers. Major human interventions like large scale land reclamation and construction of a salinity control barrage across the lake lead to environmental degradation of the wetland. Increased flood proneness became a major issue in this region receiving heavy monsoon flows from five rivers and finally drains it to the Arabian sea. With many existing mutually conflicting functions and values like flood control, pollution control, inland navigation, agriculture etc., integrated management of the water system of the wetlands is a challenging task. Decision support using databases and computer models is essential for planning water management in the wetlands. A dynamic view of the changes in spatial development in the region and its relation to inundation scenario is needed for planning flood risk management in the region. In this research, spatial and non-spatial databases are developed on the land and water resources of wetland, and models are developed for forecasting of water levels in the wetlands and river flows to the system. The databases are used for the analysis of hydrology, topographic features, and characteristics of floods in the wetland. Based on the analysis, some strategies are evolved for flood risk management in the Vembanad wetlands. Geographic information datasets of the physical features of the wetlands are generated in GIS using topographic maps and satellite data, and spatial changes in the extent of Vembanad lake during the 20th century assessed. Due to reclamation, area of the lake reduced from 290.9 km2 to 213.3 km2 during the 1917-1990 period. Bathymetry of the lake is analyzed by generating digital elevation model (DEM) and benchmark established for its elevation-area-capacity relationship. Major area of the lake is located at elevation between -6m Mean Sea Level (MSL) to 1 m MSL. Storage capacity of the wetland is analysis by generating DEM. About 398 km2 area of the wetland is located below the MSL, and storage capacity at elevation of 1 m MSL is 1079 Mm3. Hydrology of the wetlands is analyzed in terms of; quantity of river flows to the system and its variability, overall water balance of the region and mean 10
INDIA residence time of Vembanad lake. Nearly close estimates of mean water residence time of the lake for monsoon and non-monsoon periods for the pre-barrage scenario show that rescheduling of barrage operation to allow periodic tidal flushing during non-monsoon period shall be a strategy for restoration of the environment and ecology of the water system. Characteristics of floods in the region are assessed based on flood frequency analysis and hydrographs of extreme events. Inundation scenarios for selected extreme flood events are modeled in GIS. Wetlands play a vital role to attenuate extreme floods and reduction in storage due to land reclamation is a major cause for increased flood proneness in the region. Considering the physical and hydrologic characteristics of wetlands, aiming for a high level of flood protection through structural measures will be highly expensive and practically difficult. But, since floods in the region are slow rising, model- based flood forecasting and warning systems is a feasible option that can be used in combination with the structural measures for flood risk management. Applicability of artificial neural networks (ANN) for 1-day ahead forecasting of river flows to the wetland and water level variations within the wetland water system is studied. Nonlinear modelling of river flows from the Achencoil basin shows that ANN models can be successfully used for forecasting river flows from the upper basins during the monsoon period. Hydrologic data exploration using Self Organizing Maps (SOM) is found to improve the performance of the model marginally. Although ANN models are developed for forecasting the 1-day ahead monsoon water levels at three selected locations in the wetland, quality of water level data needs to be improved for effective use of the forecasting models. Since the flood risk in the Vembanad wetlands would increase further in the future with the continuing uncontrolled development, flood risk management measures have to be finalized based on a master plan for spatial development in the wetland. During the visit of Prof. Takara to India in October 2007 11
INDIA Impact of dietary intake, education and physical activity on bone mineral density among North Indian Women Ashok KUMAR DST - 10638 Professor, Maulana Azad Medical College & Lok Nayak Hospital, Department of Obstetrics and Gynecology Japanese Advisor : Hiroaki OHTA Professor and Chairmanr, Tokyo Women's Medical College The aim of the study was to find out the relation of dietary nutrients and bone mineral density (BMD) in North Indian women. This cross-sectional study was conducted from April 2006 to March 2008. Subjects included 255 healthy women, aged 20-69 years, who were the relatives of the patients being admitted in the hospital. Various demographic characteristics including socioeconomic status serum parameters in relation to BMD were evaluated. In addition, the daily dietary intake of energy, protein, fat, and calcium and the amount of physical activity were assessed. BMD at the lumbar spine, femoral neck, and Ward’s triangle was measured by DXA. BMI, physical activity, and educational level were positively correlated with BMD. The daily intakes of energy (1563.4 ± 267.2 kcal) and protein (48.7 ± 8.7 g) were below the recommended dietary allowance. Daily dietary energy, protein, and calcium intakes were correlated with BMD at the lumbar spine. Stepwise multiple linear regression analyses showed that age, BMI, and physical activity were significant predictors for BMD at all sites. In addition, energy intake was also a predictor for BMD at the lumbar spine. The protein intake was associated with BMD at the spine (P = 0.02 and β = 0.163) even after making adjustments for energy intake. Thus, dietary pattern coupled with higher education levels and greater physical activity favored bone health. 12
INDIA 13
INDIA Molecular analysis of estrogen dependent breast cancer in animal model and cell lines M.Jerald Mahesh KUMAR IND - 10903 Scientist, Centre for Cellular and Molecular Biology, Animal facility Japanese Advisor : Takeo OHSUGI Associate Professor, Kumamoto University I here present the development of estrogen receptor (ER) positive, estrogen responsive mammary tumour animal model and MAC 51 cell line from a spontaneously mutated NIH nude heterozygous female mouse. I found a mammary tumour in one of the heterozygous breeding females and this mouse was used as founder and continuous brother-sister mating with pedigree expansion system was followed to develop a medium–size heterozygous breeding colony of mammary tumors. Mammary tumors were observed only in female breeding mice and females which were not mated did not develop tumors in its life span. Among 42 females bred, 26 females developed mammary tumour (incidence rate 62%). The age of occurrence of tumour was about 7 months (range, 3.5 to 12) and average tumour- size was about 3.6 cm 3.2 cm 2.8 cm (length width height). Highly significant increases in white blood cell count (WBC) and neutrophils (P < 0.01) were observed in tumour animals but significant decreases in the levels of red blood cells (RBC) and lymphocytes (P < 0.05) were observed. Highly significant increases in the levels of serum aminotransferase (sGOT), serum alanine amino transferase (sGPT) (P < 0.01) but no significant changes in the value of albumin and total protein were observed. Highly significant (P < 0.01) increase in the levels of estrogen in tumour animals, but no significant changes in the levels of progesterone and blood glucose levels were observed. Grossly, tumour mass revealed multi-lobes, each lobe had multiple solid nodules enclosing a central necrosed tissue. Histologically, tumour mass resembled luminal/tubular epithelial-like morphology with well differentiated (Grade 1) lobes. Neoplastic tubular epithelial cells metastasized through both haematogenous and lymphatic route into regional lymph nodes, liver, lung, heart, spleen, brain and lymph nodes. Ultrastructurally, round to oval shaped dark epithelial cells with large numbers of endoplasmic reticulum and secretary granules were observed in the tumour cells. Expression of ER α, cytokeratins 18, 19, proliferating cell nuclear antigen were high in neoplastic epithelial cells of all tumour animals .Screening of mouse mammary tumour virus (MMTV) in these animals using MMTV long terminal 14
INDIA repeat (LTR) specif ic primers does not show any amplif ication. Hormone responsiveness experiment indicated that estrogen, progesterone levels and tumour size were reduced from seventh day onwards in ovariectomized and tamoxifen (anti–estrogenic) treated groups. MAC 51 (mammary adenocarcinoma cell line) was developed from animal number 51 and this line shows an epithelial–like morphology with average doubling time of 15.4 hours. Immunofluorescence assay showed high degree of localization of ER α protein but, no ER β expressions were observed. Real time PCR assay showed 64–fold over expression of ER α gene in tumour animals and 16–fold over expression in cell line was observed. Immunostaining of apoptotic genes showed over expression of Bcl-2, caspase 3 and equal expression p53 was observed in MAC 51 and tumor samples. Over expression of glucocorticoid receptor (GR), K12, K18 and K19 was observed in MAC 51 cell line in immunofluorescence assay and high amount of GR protein was quantitated in indirect ELISA compared with COS-1 cell line. However, less transfection efficiency of MAC 51 cell lines was observed using GR ligand and dexamethasone–mediated transfection compared with commercial available Lipofectamine. Transfection of apoptotic gene constructs GFP–Bcl-xL with MAC 51 showed diffused staining in cytoplasm but GFP–Bax transfected cells showed diffused staining in both cytoplasm and nucleus. Tumorigenicity assay showed high concentration of MAC 51 cells (3 105 cells) produced tumor as solid palpable mass within 6 days at the site of injection, but the lower concentration (3 104 cells) took 15 days to get a palpable mass. Gross, histopathology and metastatic pattern of this tumor resembled with our spontaneous model. Our models (animal and cell line ) mimics most of the characteristics of human breast cancer subtype (luminal epithelial–like/ER positive) and I believe this has a major application potential in the human breast cancer research and drug screening programme. 15
INDONESIA Mitochondrial genetics in the malarial parasites: Atovaquone-resistant Plasmodium berghei as a model Josephine Elizabeth SIREGAR LIPI - 10414 Research Fellow, Eijkman Institute for Molecular Biology, Malaria Division Japanese Advisor : Kiyoshi KITA Professor, The University of Tokyo The development of new antimalarial drug is being a target in combating malaria disease, since the parasites that causes malaria, Plasmodium, has developed resistance to the antimalarial drug mainstays, chloroquine and sulfadoxine- pyrimethamine. Studies aimed to identify the molecular mechanism that underlie resistance phenomenon had revealed various mutations in the gene encoding the enzyme target in the malaria parasite. Mitochondrial inhibitors represent valuable additional chemotherapeutic agents, yet the biogenesis and function of plasmodial mitochondria remain poorly understood. Atovaquone, a hydroxy-1,4-naphthoquinone, is an anti-malarial that shares structural similarity with protozoan ubiquinone, a coenzyme involved in the mitochondrial electron transport. It is effective against chloroquine-resistant strains of P. falciparum, and is a major component of MalaroneTM, a fixed combination of atovaquone and proguanil. Mutations confer ring atovaquone resistance were identif ied in the mitochondrial cytochrome b gene of P. berghei, P. yoelii, P. falciparum, Pneumocystis carinii and Toxoplasma gondii. In Plasmodium spp., 10 mutations, M133I, L144S, I258M, F267I, Y268C/N/S, L271F/V, K272R, P275T, G280D, and V284F had been documented, mostly located in the quinone binding domain 2 (Qo2). The two main P. berghei mutations reported previously by our group, M133I and L144S, were all located in the quinone binding domain 1 (Qo1). To obtain a better model for the biochemical and genetic studies of mutations observed in the human P. falciparum, I have now extended the study to isolate a wider range of P. berghei resistant strains, in particular those having mutations in the Qo2 region conferring high degrees of resistance. Here I report four new mutations, most in the Qo2 domain, two of which are convergent to codon 268 mutations in P. falciparum. All of those mutations have been proven to associate with resistance to atovaquone to Plasmodium. Technical difficulties in isolating active assayable mitochondria in the malarial parasite hinder us to obtain direct biochemical evidence to support the aforementioned evidence. Following the establishment of the mitochondrial isolation method in the malaria parasite, I further tested the activity of DHO- 16
INDONESIA cytochrome c reductase in various P. berghei atovaquone resistant and sensitive clones in the presence of a wide concentration range of atovaquone. All of the mutant mitochondria showed higher IC50 values (1.45 – 43.5 nM) than that of wild type (0.327 nM). The highest IC50 was found in clones carrying the 268C and 268N mutations with an approximately of 100 fold increase. So far, there has been no report as to how resistance to antimalarial drugs that target function encoded in the mitochondrial DNA (mtDNA) is inherited, while mtDNA is inherited uniparentally through the maternal line. My study of genetic crosses of atovaquone-resistant (atv-r) and -sensitive (atv-s) in murine malaria parasite P. berghei indicates that the presence of the mutation in the cyt b gene in the atovaquone-resistant P. berghei results in the loss of fitness of the parasite during the development of the sexual stage in the mosquito vector. The observation that atovaquone resistance mutation in P. berghei, particularly that convergent to P. falciparum, affects both growth in erythrocytes and mating fitness might explain the defect in the development in mosquito. This probably leads to observed reduction in transmission of the drug resistance to offspring. My results corroborate the phenomenon that emergence and spread of atovaquone-resistant P. falciparum is very limited in the field. 17
INDONESIA Adaptation to Decentralization and Monetary Economy by the Kenyah Swiddeners in East Kalimantan Ndan IMANG DGHE - 10510 Lecturer, University of Mulawarman, Center for Social Forestry Japanese Advisor : Makoto INOUE Professor, The University of Tokyo Indonesia is an archipelago country, consists of more than 13,000 islands, inhabited by more than 200 ethnic groups, with the population of 242 million people. Among of the main five islands is Kalimantan. East Kalimantan1 covers land area of 200,395 km2 of which 140,000 km2 covered by forest. It favored with abundant of natural resources such as timber, wild animals, NTFPs, coal, gold, minerals, etc. One of the indigenous people of East Kalimantan is the Kenyah Dayak, mostly living in the upper land, and they are forest-dependent communities. Since 1960s, some of them have migrated down river for a better economic life purpose. In 2000, decentralized policy on natural resource management was launched in Indonesia that has affected their customary resource managements which in turn accelerates monetary economy infiltration. This research has been undertaken to investigate adaptation of the indigenous Kenyah to decentralized policies in natural resource managements, and the monetary economy infiltration. Data and information were drawn from two forest villages and one suburban village. By reviewing earlier studies and problems arose in such external pressures, I set five research objectives: (1) to explore the economic life of the Kenyah, (2) to investigate the influence of monetary economy in swidden agriculture (ladang)2, (3) to analyze cohesiveness among the Kenyah people, (4) to investigate customary resource managements under decentralized policy, and (5) to explore dynamics of perception to forest functions Research found that despite the influence of the monetary economy, the Kenyah still practicing ladang, mostly for subsistence. Monetary economy had already infiltrated to varying degree. It leads to declining in the importance of ladang, the fading of traditions related ladang, change in ladang calendars, decreasing labor allocation for mutual-aid and reciprocal-work systems. Conversely, contribution of non-ladang activities to household income increased because market availability to sell cash crops, and cash income from off-farm 1 It was known as Borneo 2 Ladang is the Indonesian term for Swidden agriculture, and has been used nation-wide, will be frequently used in this article. 18
INDONESIA activities Kenyah people in general are quite responsive to changes in livelihood diversif ication, but rather unenthusiastic about practicing new inorganic agricultural practices due to unsure about the returns, and the legacy of former values. Under f ierce competition and external pressures, the Kenyah remain maintaining cohesiveness among them through community self-help works, mutual-aid system, reciprocal works in ladang and willingly to assist those thought need help. The intensity of the cohesiveness in suburban village however, is slightly declined compared to forest villages. Regardless the disadvantages, negative impact of rigid cohesiveness and external pressure, they consider that cohesiveness should be sustained. Strategies to maintain cohesiveness are to revive and strengthen the functions of customary institution (adat), to impose penalties to those not actively involved in self-help works, and keep to hold annual ceremony pelas tahun and cultural festival (pemung tawai). Regarding customary resource management, the Kenyah divide village territory into four purposes: settlement and graveyard, agricultural area, customary conservation forest, and utilized forest. Before decentralization, village boundaries were delineated by natural signs, and mostly unwritten that had caused dispute over boundaries. Therefore, after decentralization, village boundaries are both in natural signs and man-made signs in a formal document. Access to NTFPs before and after decentralization both for villagers and non-villagers is less strict. After decentralization, it is stricter in particular for non-villager. Before decentralization, customary rules over NTFPs were mostly unwritten, but stricter in imposing penalties in decentralization era, and it put in formal document. In forest communities NTFPs largely contribute to cash income before and after decentralization, primary forest ecology is the most suitable habitat of wild animals for breeding. Therefore, they enclave some rich forest areas against logging activities, logging activities only allowed within designated area, not allowing logging activity in rivers at upper side of the village, customary law (adat) has drafted appropriate regulations for a sustainable utilization of forest products and forest ecology. I concluded the overall study that “extractive habits” remain adhered with the Kenyah. They remain practice cohesiveness among them, but it shows a decreasing of intensity so that they have been trying to revive customary law to strengthen cohesiveness among them. In decentralization era, they formalized customary rules over natural resources. To secure individual rights over land in suburban community, the people are encouraged to get “land certificate” as “inner boundary” It is recommended to immediately change ‘extractive habits’ with more intensive cultivation in particular animal husbandries, to grow tradable crops and estate commodities. ‘Social capitals’ should be in accordance with new situation under monetary economy infiltration. In agricultural extension, an agricultural 19
INDONESIA off icer should pay serious attention to old values of the Kenyah, clearly demonstrates the ‘financial comparative advantages’ of better livelihood systems. For academic societies, this research supports existing theories such as customary resource managements under decentralized policies, cohesiveness of an ethnic group under monetary economy infiltration. The dissertation could also explore new ideas such as formal recognition to customary resource managements, and to practice cohesiveness in benefit-oriented activities. Several recommendations were given. Lessons learned from this study could be useful for researchers in conducting similar research, and for policy makers in formulating farm and off-farm livelihoods for a better life of the Kenyah people. 20
INDONESIA Nucleolar organizer regions in squamous cell carcinomas of the uterine cervix treated with chemoradiotherapy Iin KURNIA LIPI - 10511 Young Scientist, National Nuclear Energy Arency, Center for Technology of Radiation Safety and Metrology Japanese Advisor : Takashi NAKANO Professor, Gunma University Background: Nucleolar organizer regions (NORs) are chromosomal loops of DNA involved in ribosomal synthesis. Their size and number in a nucleus has been reported to reflect the proliferative activities of various cells. The purpose of this study was to assess the meaning of the number of NORs in tumor-cell nucleoli compared with other proliferative markers before and after 10 Gy irradiation. Material and Method: Forty six biopsy specimens from twenty three patients with cervical squamous cell carcinoma treated with chemoradiotherapy at Cipto Mangun Kusumo Hospital (Indonesia) taken before radiotherapy and after exposure to 10 Gy were analyzed. The number of NORs was measured using a silver staining method. MIB-1 and p53 labeling indexes (LI) were measured using an immunohistochemical method. Histological radiation response and mitotic index (MI) were investigated with hematoxylin and eosin staining. Result: After 10 Gy irradiation, the number of NORs per nucleolus (AgNOR score) decreased from 4.9 to 3.4 (p
INDONESIA DOCUMENTATION OF EXAMINATION Figure 1. I present the my research in PhD examination Gunma University Graduate School of Medicine, Maebashi J apan, on 1 September 2009 a b Figure 2. Professor. Takashi Nakano, MD,PhD (a) and Associate Professor Yoshiyuki Suzuki MD,PhD Speaking in Thank Giving Party after my PhD Examination, Maeabashi, J apan on 1 September 2009 22
INDONESIA Studies on Properties of Cellulosic Hydrogels in Salvia Nutlets Rike YUDIANTI LIPI - 10512 Researcher, Indonesian Institute of Sciences, Research Center for Physics Japanese Advisor : Jun-ichi AZUMA Professor, Kyoto University Detailed characterization of Salvia hydrogels as one of cellulosic biopolymers was described in this thesis. Research work in this direction is expected to open their usability as new food additives or other functional materials. At the beginning, pericarp structures of nutlets from forty five Salvia species as origin of hydrogel were investigated comparatively and classification of them was tried based on their hydrogel productivity and carbohydrate compositions. In addition mechanism of expanding hydrogels out from the epicarp layer of Salvia nutlets was also discussed. Morphological properties of the thirty nine expandable nutlets of Salvia species focusing on their pericarp structure and hydrogel productivity showed a good co-relationship between hydrogel content (x) and epicarp thickness (y), found to have a straight co-relationship y = 1.93 x + 0.0006 (R2 = 0.8). The hydrogels were mostly found to be rich in xylose (eighteen species) and followed by hydrogels rich in glucose, galactose and xylose (sixteen species). All native hydrogels isolated from expandable nutlets of three species of Salvia, S. miltiorrhiza (SM), S. sclarea (SS) and S. viridis, were present as a kind of cellulose-hemicellulose composites. Neutral fractions of the hydrogels were composed of a mixture of starch and galactan in the SS and SV hydrogels, while galactan was replaced by arabinogalactan in the SM hydrogel. Acidic fractions were, however, commonly composed of (1,4)-linked xylans highly substituted at O-2 positions. Mixed substitutions with 4-O-methylglucuronic acid and glucuronic acid occurred in both of the SS and SV hydrogels, while glucuronic acid was exclusively substituted in the SM hydrogel. Structural analysis of the oligosaccharides from reduced acidic polysaccharides exhibited random and contiguous distribution of uronic acids. Presence of only one type acidic residue (GlcA) in SM gave simpler mass chromatograms than in the cases of SS and SV. The native hydrogels have typical gel-like properties at 1.0% (w/w). Addition of salts and urea induced a change from gel to liquid state. Even the addition of urea induced more clear-cut liquefaction effect on the hydrogel. Effects of additive ion size, pH and temperature up to 60ºC revealed that the electrostatic repulsion is a major contributor for production of hydrogel structure. In addition to electrostatic repulsion between free-charged carboxyl groups, divalent metal ion bridges such as 23
INDONESIA calcium egg box structures together with hydrogen bonds was demonstrated by recovery of viscosity of all hydrogels by addition of calcium ion after splitting cross-linkages due to calcium by acidification. Water structure of the native Salvia hydrogels, SM, SS and SV, at 1.0% (w/w) was distributed in tightly bound (83- 89%) and free (10-16%) states. Presence of 0.5-3.0 M urea and 1.0-3.0 M NaCl induced conversion of partially free water to loosely bound water. Further at 5.0 M NaCl concentration, all water distribution in the hydrogel network was assigned in tightly bound state. This indicates that both urea and NaCl change water enviroment of the Salvia hydrogels from loosely hydrogen bonded networks to rather compact water-salt clusters. Thermal stability of before-dried (BD) hydrogels isolated from Salvia (S. viridis (SV) and S. sclarea (SS)) was characterized by using microwave heating up to 230ºC. Interactions between cellulose and hemicellulosic polysaccharides in both hydrogels were began to split evidently by heating at 120ºC and clear phase separation occurred by heating at 160ºC for 5 min. Analysis of sugar composition of both soluble and insoluble fractions indicates that hemicellulosic poysaccharides were gradually released accompanied by degradation to form cellulose rich precipitates. This revealed that interactions between cellulose and hemicellulosic polysaccharides were prerequisite for formation of gel structure. 24
INDONESIA A study of growth and somatotypes in Indonesians Neni Trilusiana RAHMAWATI DGHE - 10615 Lecturer, Gadjah Mada University, Faculty of Medicine Japanese Advisor : Kumi ASHIZAWA Professor, Otsuma Women's University Although a considerable number of paleoanthropologic papers based on fossil remains in Indonesia are available, studies on living humans in Indonesia are rather scarce in biological anthropology. The aim of this study is to determine and synthesize aspects of the growth and somatotypes of the people of Indonesia. Through studies on living humans, we can obtain information on nutritional status, so-called ‘racial’ differences, secular change, and so on. Studies on the living human reflect well the ecological conditions in which we live, and so the discipline of human biology attaches great importance to them. This study is based on a cross-sectional sample of 2,097 subjects aged 7 to 50 consisting of three groups: children, adults, and athletes. (1) Indonesian children, 816 boys and 900 girls, aged 7 to 15, were investigated in 1999, 2001 and 2006 in three areas: an urban area (Yogyakarta), an agricultural village (Imogiri in Bantul), and a fishing village (Bungus Telk Kabung in Padang). (2) Indonesian adults, 61 males and 77 females in Yogyakarta, aged 20s to 50s, were investigated in 2005. Among the subjects, 55% of the males and 40% of the females were laborers. (3) Indonesian male athletes, i.e. 19 badminton players aged 16 to 27, 96 soccer players aged 16 to 28, and 74 volleyball players aged 16 to 28 were studied. A group of 51 male medical students, aged 17 to 21, was adopted as a control for these three athlete groups. All these subjects were investigated in 1994 and 1995, in Yogyakarta. Chapter 1 presents the methods of anthropometry and somatotyping. Chapter 2 discusses the g rowth of height, weight, and body mass index (BMI) of the children in the three ecologically 25
INDONESIA different areas mentioned above. Their growth was compared among them, and referred to the growth of Philippine children. The results showed that the urban Indonesian children are taller and heavier, and have an earlier age at maximum yearly increment of height and weight than their peers of both agricultural and fishing villages. These results coincide well with those obtained from a study in the Philippines, and with worldwide recognized phenomena: i.e. children from well-off families are taller and heavier. Comparing the children of Yogyakarta with a well- off group in Manila, the Philippines, the former are shorter and lighter. This suggests not only a difference of economic level between the families of Yogyakarta children and of Manila children, but also a diet and lifestyle difference, and a difference in environmental stress between the Muslims in Yogyakarta and the Catholics in Manila. Chapter 3 reviews the mean somatotype distribution during the growth period for each area. With regard to the differences by region in Indonesia, the urban children were more endomorphic and mesomorphic, but less ectomorphic than the children in either the agricultural or the fishing village. Between the villages, the children in the fishing village were less endomorphic than the children in the agricultural village. Chapter 4 describes the body size and shape of the present-day Javanese adults in Yogyakarta. For body size in comparison with present-day Japanese adults in the literature, the Javanese were shorter in both height and sitting height in both sexes. The males were considerably lighter in weight, but the females were not in comparison with the Japanese of the same sex. Since leg length was not short in the Javanese, they had as a consequence greater leg length to height than the Japanese. Comparing these two populations of 60 years ago, almost the same tendency was observed, except in height, which had been similar in both populations at the earlier time. Therefore, we found that relative leg length to height is a genetically stable characteristic adapted to climate, cold or warm, at least as for the Mongoloid population. As for secular change of body size, both groups exhibited a great increase during the past 60 years although the Javanese subjects’ increase was smaller. Chapter 5 presents the interrelationships between somatotype and physical performance of the Indonesian athletes. Among them, the badminton players were small in height and weight, but great in upper arm and trunk skinfolds; the soccer players exhibited great girth of the four limbs and a large BMI value, but their supraspinale skinfold was small; the volley ball players were great in height and weight, but small in subscapular and calf skinfolds. The mean somatotype of the badminton players was central, that of the soccer players was balanced mesomorph, and that of the volleyball players was mesomorph-ectpmorph. Compared with international data, the Indonesian players were found to be extremely short and light in each of the three sports. 26
INDONESIA In the end, only recently have enough data been amassed from various parts of the world to present possible genetic patterns in growth and somatotype. However, many gaps still remain to be filled after future research. 27
INDONESIA Studies on the Soil Physicochemical Properties of Sago- Palm (Metroxylon sagu Rottb.)-Growing Areas and Its Growth and Starch Productivity in Southeast Sulawesi, Indonesia Fransiscus Suramas REMBON DGHE - 10716 Lecturer, Haluoleo University, Faculty of Agriculture Japanese Advisor : Yoshinori YAMAMOTO Professor, Kochi University Sago palm has been utilized more than two hundred years as the second staple food after upland rice for the indigenous people in the Southeast Sulawesi, Indonesia. However, the growing areas decreased appreciably from about 13,000 ha in 1986 to 4,988 in 2007, mainly due to the conversion to the rice field. On the other hand, in recent years sago palm has been paid much attention as the raw materials for industrial use such as bio-fuel (alcohol), biodegradable plastic production, etc., due to its great starch productivity. This study was carried out to obtain the basic information on the soil environment under sago growing areas and the growth and starch productivity of sago palm in the Southeast Sulawesi to predict and evaluate the possibility of sago palm cultivation in this region. Physicochemical properties of soils under sago-palm-growing areas (SF) were compared with those of the surrounding cashew fields (CsF), cacao fields (CoF), and paddy fields (PF) around Kendari. The soil texture under the SF varied from sandy loam to silty clay and the soil bulk densities in the SF were mostly lower than those in the CsF and CoF, due to the differences in water regimes. The soil pHs in Photo was taken shortly after my final exam defence, February 6, 2010. From the left : Prof. Tetsushi YOSHIDA (Co- supervisor and Examiner, Kochi University), Associate Prof. Dr. Akira MIYAZAKI (Co-Supervisor and Examiner, Kochi University), Prof. Hideki SUGIMOTO (Examiner, Ehime University), myself, and my Supervisor and Japanese Advisor Prof. Yoshinori YAMAMOTO (Supervisor and Examiner, Kochi University). 28
INDONESIA the SF were dominantly acid, particularly for the organic soils in Watulondo. The total-N contents varied from low to very high in the SF and these were higher than those in the CsF, CoF and PF. In the SF, the available-P contents were dominantly very low to medium, whereas the exchangeable-K contents were mostly low. The soil CECs in the mineral soils widely varied from low to high, except in the peat soil in Watulondo where the CECs were very high. The total-C contents were widely ranged from very low to very high in the mineral soils, while it was extraordinarily high in the peat soil of Watulondo. The comparison of the physicochemical properties of mineral soils around Kendari with those in the major sago palm growing areas of eastern Indonesia, Seram and Jayapura, revealed that nutrient contents of sago-palm-growing areas around Kendari showed higher in the CEC, total-N and total-C than those in Seram and Jayapura. On the other hand, the exchangeable-Ks, available-Ps and pH values showed lower around Kendari than in Jayapura and Seram. Around Kendari soil acidity is not so good for nutrients availability. The growth and starch productivity of the three types of sago palm (folk variety; Molat, Tuni and Rotan) found around Kendari were compared along their growth stages after trunk formation (ATF). The increase in trunk weight per year ATF, the average trunk weight and starch yield at harvesting stage were higher in the order of Molat >Tuni >Rotan. The differences in starch yield were caused by the differences in trunk (pith) weight, Photo was taken during my Final Exam Presentation at the Faculty of Agriculture, Ehime University, February 6, 2010. but not by the starch percentage. The average starch yield per ha of Molat sago was predicted around 9 ton during the consecutive years from 2006-2015. However, the starch yield showed a downward trend from 13.5 t/ha in 2006 to 4.3 t/ha in 2015. This trend is caused by the decreasing numbers of harvestable trunks in each subsequent year due to the less management of sago palm garden. Sago palm is one of the rare crops which can grow on the marginal lands such as deep peat and water-logged soils. In Southeast Sulawesi there are huge deep peat land at Tinondo swamps, district of Preparation before the Final Exam Kolaka, and waterlogged land at Rawa Aopa presentation, at the Faculty of Agriculture, Ehime University. surrounded by districts of Kolaka, Konawe and South Feb. 6, 2010. 29
INDONESIA Konawe. These lands are possible to be converted into the large scale plantations of sago palm aiming at the industrial use of the starch. The total area of the lands is around 58,000 ha. If the sago palms are planted at a density of 10m x 10m in the whole land and harvestable one palm from each clump in each two years after attaining harvesting stage, the starch yield would be 1.16 million ton per year from the average starch yield of Molat sago (ca. 400kg). This is expected to result in the agricultural and rural economic developments in the districts. For developing the huge sago palm plantation, the use of seedlings as planting materials were examined, and the possibility was approved. Photo was taken at the preliminary exam Dec. 21, 2009 in the Teleconference Room, Faculty of Agriculture, Kochi University. From the left: my Supervisor and Japanese Advisor Prof. Yoshinori YAMAMOTO, myself, my colleague Albertus Fajar IRAWAN (Indonesian PhD Student), my Co-Supervisor Associate Prof. Dr. Akira MIYAZAKI, and the Technician of the Studio room. 30
INDONESIA Environmental factors affecting lacustrine phytoplankton dynamics in Central Kalimantan, Indonesia Ardianor DGHE - 10823 Lecturer, University of Palangka Raya, Agriculture Faculty Japanese Advisor : Seigo HIGASHI Professor, Hokkaido University During 29 of 35 months from February 2004 to December 2006, I collected phytoplankton and recorded water level, water transparency (Secchi-disk value), water temperature, electrical conductivity, pH, dissolved oxygen and chlorophyll-a at the oxbow Lake Tehang and the backwater Lake Batu located in a floodplain of the Kahayan River system, Central Kalimantan, Indonesia, to extract environmental factors affecting the lacustrine phytoplankton community dynamics by using Multiple Correlation and Regression Analysis, ANOVA permutation test and two ordination techniques redundancy analysis (RDA) and canonical correspondence analysis (CCA). In 2004, the vertical distribution of phytoplankton was surveyed on October 3th – 4th at Lake Tehang and on October 11th – 12th at Lake Batu to reveal the diel migration of phytoplankton. From March to July 2008, I collected phytoplankton and recorded above-mentioned environmental conditions, light intensity and amount of nutrients (orthophosphate, nitrate and ammonium) at open water zone and interrhizon area, i.e. macrophyte-covered water zone, of Lake Lutan to reveal the effects of the interrhizon on the phytoplankton community and environmental conditions. The main results were: 1) Phytoplankton on all observed lakes were represented by a total of 96 species (including Tabellaria spp. which obviously consisted of multiple unidentifiable species) belonging to eight classes, dominated by Euglenophyceae (38%), Bacillariophyceae (31%) and Chlorophyceae (21%). Number of species was 80 at Lake Tehang, 77 at Lake Batu and 74 at Lake Lutan. Only Cryptomonas sp. and Trachelomonas volvocina were abundant in all of the three observed lakes. In floral composition, Lakes Tehang and Batu were similar to each other but Lake Lutan was remarkably different from other lakes. 2) The long-term surveys in Lakes Tehang and Batu exhibited seasonal trends of phytoplankton population dynamics. Chlamydomonas sp, Cryptomonas sp. and Trachelomonas volvocina occurred throughout the year, while Peridinium sp. and Trachelomonas armata were abundant only in the flood season and Cymbella spp., Eunotia spp., Navicula spp., Euglena proxima, E. spirogyra, Phacus pleuronacles, Trachelomonas hispida and Trachelomonas spp. were abundant only in dry season. 31
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