Transmission patterns of African horse sickness and equine encephalosis viruses in South African donkeys
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Epidemiol. Infect. (2002), 128, 265–275. # 2002 Cambridge University Press DOI : 10.1017\S0950268801006471 Printed in the United Kingdom Transmission patterns of African horse sickness and equine encephalosis viruses in South African donkeys C. C. L O R D "*, G. J. V E N T E R #, P. S. M E L L O R $, J. T. P A W E S K A # M. E. J. W O O L H O U S E % " Florida Medical Entomology Laboratory, Uniersity of Florida – IFAS, Vero Beach, FL 32962, USA # ARC-Onderstepoort Veterinary Institute, Onderstepoort, Republic of South Africa $ Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright, UK % Centre for Tropical Veterinary Medicine, Uniersity of Edinburgh, Easter Bush, Roslin, Midlothian, UK (Accepted 17 June 2001) SUMMARY African horse sickness (AHS) and equine encephalosis (EE) viruses are endemic to southern Africa. AHS virus causes severe epidemics when introduced to naive equine populations, resulting in severe restrictions on the movement of equines between AHS-positive and negative countries. Recent zoning of South Africa has created an AHS-free zone to facilitate equine movement, but the transmission dynamics of these viruses are not fully understood. Here, we present further analyses of serosurveys of donkeys in South Africa conducted in 1983–5 and in 1993–5. Age-prevalence data are used to derive estimates of the force of infection, λ. For both viruses, λ was highest in the northeastern part of the country and declined towards the southwest. In most of the country, EE virus had a higher transmission rate than AHS. The force of infection increased for EE virus between 1985 and 1993, but decreased for AHS virus. Both viruses showed high levels of variation in transmission between districts within the same province, particularly in areas of intermediate transmission. These data emphasize the focal nature of these viruses, and indicate areas where further data will assist in understanding the geographical variation in transmission. that other Culicoides species are involved. The North INTRODUCTION American species C. sonorensis Wirth and Jones is a African horse sickness (AHS) is a viral (Reoviridae : competent laboratory vector [6, 7] while C. bolitinos Orbiirus) disease of equines endemic to sub-Saharan Meiswinkel can be infected in the laboratory [8]. AHS Africa. Introductions to naive host populations else- virus has also been isolated from field collected C. where have caused severe epidemics. In the Iberian bolitinos during an outbreak [9]. Several species of peninsula and Morocco it is estimated that 2000 Culicoides can become infected with other orbiviruses, horses died and 350 000 were vaccinated from such as bluetongue and epizootic hemorrhagic disease 1987–91 [1, 2]. The virus can infect most species of [4, 10–13]. equines, although severe disease is usually found only In South Africa, AHS virus is considered endemic in horses (up to 95 % mortality). Based on its in the northeastern parts of the country (primarily the abundance and known vector competence, the biting Northern Province and Mpumalanga ; Fig. 1) [14]. midge, Culicoides imicola Kieffer (Diptera : Cerato- Outbreaks in southwestern South Africa appear to be pogonidae), is considered the most important vector the result of introductions of the virus to the local [3–5]. This, however, does not exclude the possibility equine and Culicoides populations, followed by the * Author for correspondence. loss of the virus when susceptible hosts are exhausted Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
266 C. C. Lord and others N G M NW NK FS SK NC EC WC Districts analyzed individually Province analysis only Fig. 1. Location of districts sampled in the 1983–5 serosurvey. Filled triangles ; districts with sufficient samples to analyse separately ; open circles, data used only in province and country-level analysis. NC, Northern Cape ; WC, Western Cape ; EC, Eastern Cape ; NK, North Kwazulu\Natal ; SK, South Kwazulu\Natal, FS, Free State ; G, Gauteng ; NW, Northwest ; M, Mpumalanga ; N, Northern. Note that Kwazulu\Natal is one province ; North and South regions were considered separately due to expectations of different transmission rates. or seasonal changes reduce midge populations. Zebra the short-term visiting of horses for competition. The are the primary reservoir host [15], allowing cir- success of the free zone in allowing importation and culation of the virus all year in areas with high zebra exportation of equines, and any potential for expand- populations. ing the free zone, will depend upon an in-depth Until recently, all of South Africa, along with other understanding of how the transmission and epi- countries in the Sub-Saharan area, was considered to demiology of AHS virus varies geographically. be AHS – positive zones. This severely restricted the Although very little is known about its epidemi- movement of equines in and out of these areas. This ology, equine encephalosis (EE) virus (Reoviridae : impacted the horse industry, preventing not only Orbiirus) is also endemic in southern Africa [17]. South African horses from being exported or com- Similarly to AHS virus, EE virus appears to infect peting abroad, but restricting the ability of the several species of equines, with disease found primarily countries involved to host international equestrian in horses. There is a high seroprevalence in equines events. The recent designation of an AHS-free zone in across the country [18], but a limited number of Cape Town (Western Cape) will aid in the exportation clinical cases have been reported ; most cases are of horses from South Africa, but with significant costs subclinical [17]. Although a variety of clinical signs in maintaining appropriate registration, vaccination have been ascribed to EE, few cases have been and quarantine records. The location of the free zone confirmed serologically or by virus isolation. Culi- was based on a historical absence of AHS, not the coides imicola has been shown to become infected and absence of vectors ; difficulties with this approach support replication of EE virus in the laboratory [19], were illustrated with the 1999 outbreak of AHS in the and it is thought that Culicoides are the natural surveillance zone bordering the free zone [16]. Dec- vectors [17]. laration of the small free zone still restricts the Most horses in South Africa (except in the AHS movement of animals within the country and limits free and surveillance zones) are routinely vaccinated Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
AHS and EE in South African donkeys 267 against AHS virus, while donkeys and other equines may result in grouping data that are inherently are rarely vaccinated. We would expect that vac- inhomogeneous. Comparisons of the fit of age-preval- cination of horses would decrease AHS transmission ence data to the force of infection model at different to donkeys, particularly in areas with few wild equines. spatial scales may reveal such groupings. Ideally, these No vaccine is currently available for EE virus ; if the types of data would also be analysed using spatial two viruses have similar transmission mechanisms, we clustering methods to detect biological groupings and would expect higher transmission of EE due to the the appropriate spatial scale. In practice, however, lack of vaccination. A comparison of the transmission the data may not be extensive enough to meet the patterns of the two viruses in donkeys will provide requirements of these methods or the clusters may not insights into the transmission mechanism for EE virus be consistent between different clustering algorithms. and the effect of vaccination against AHS virus. The climate varies considerably across South Africa, Much can be inferred about the transmission of a and we predict that this will result in variation in virus by examination of the prevalence of infection in transmission of vector-borne viruses. The variation in different age classes of the vertebrate host [20]. The climate will affect many aspects of viral epidemiology, prevalence is often measured by the presence of particularly the ecology and population size of the antibodies, which measures exposure to the virus. In vector(s). The west coast of South Africa is primarily an endemic area, the typical pattern is a steady hot, dry desert, changing to semi-arid plateau in the increase in the proportion of individuals infected with interior. The southwestern Cape has a Mediterranean age. In areas with periodic epidemics, there should be climate (warm dry summer, cool wet winter), while sharp increases in the prevalence at ages correspond- the southeast coast is subtropical, with humid, wet ing to each epidemic. If transmission is rare and summers. The temperate eastern plateau (most of sporadic (infrequent introductions of the virus with Northern province and Mpumalanga) is cool, with wet insufficient vectors or hosts to maintain an epidemic), summers and dry winters ; becoming hotter and drier the prevalence should be zero in most age classes with to the north. low prevalence in some classes, but no apparent The highest populations of C. imicola have been pattern. found at sites in the Northern province and northern The force of infection, λ, can be derived based on Kwazulu\Natal [22], with low abundances in the age-prevalence data in endemic areas [20, 21]. This interior of the Eastern Cape. However, trap catches provides a quantitative measure of the strength of varied widely over small spatial scales. Regression transmission, which can be compared between areas models developed from these data [23] indicated that or over time. Based on λ, the basic reproduction soil moisture and annual minimum temperatures number, R , can also be calculated. R is defined as the explained much of the variance in collections. These ! ! number of secondary cases resulting from one primary models predict low populations in the dry western case in a completely susceptible population. From this interior, particularly along the Northern–Western definition, it is clear that if R 1, a virus can invade Cape border, and high abundances along the coast ! or persist in a population of hosts. If the type of and in the northeast. However, it should be noted that transmission (e.g. endemic, epidemic, or sporadic) is agricultural land use will also affect populations of due primarily to the size and seasonality of vector C. imicola ; the models did not address this factor. populations shared between AHS and EE viruses, we Two data sets have been collected in the last 20 would expect values of λ for these viruses to be years on the prevalence of AHS and EE viruses in correlated across regions of the country. Vaccination donkeys (Equus asinus) [18]. Basic analysis of the would be expected to depress transmission of AHS, prevalence of the two viruses has been published [18] ; resulting in lower λ for AHS virus. If, however, the we present here a further analysis of the data, the transmission mechanism for EE virus is not dependent force of infection, λ, and the basic reproduction upon the same or similar vectors as AHS virus number, R , for different regions, and implications for ! transmission, we would expect no correlation between the epidemiology of these viruses. the force of infection for the two viruses. Data are often grouped by political subdivisions, METHODS such as provinces, to estimate prevalence or force of Data infection in different areas. However, these political divisions may not reflect biological boundaries and During two serosurveys, in 1983–5 and 1993–5, serum Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
268 C. C. Lord and others samples were collected from donkeys and analysed for increasing function of age. The proportion infected at antibodies to AHS and EE viruses as described in age a, pi(a), is, therefore, Venter et al. [18]. Briefly, veterinarians were asked to pi(a) l 1ke−λi(a−M) collect blood from healthy donkeys which were still resident in their natal district. Attention was focused where M is the age at which maternal antibodies on younger animals ; therefore, the sampled age become undetectable. Using maximum likelihood distribution may not reflect the true age distribution. methods [25], λi can then be estimated as the value Only samples with reliable age data were used for this which maximizes the log likelihood, analysis. Sera were transported to the ARC-Onder- kxiaλi(akM )jyia ln(1ke−λi(a−M)) stepoort Veterinary Institute and tested using ELISA a [24]. Antibodies used were group-specific and not where xia is the number seronegative for virus i at age serotype-specific ; therefore, no information was avail- a and yia the number seropositive at age a. No data able as to the specific serotypes involved in positive were available on M for donkeys ; a value of 5 months reactions. For each sample, the magisterial district was used based on data from zebra [15]. The variance where the donkey resided was also recorded. Samples of λ can be estimated as were grouped into monthly age classes for animals var(λi) lk kyia(akM )# A aged between 5 months and 1 year, and yearly age a B classes above 1 year. Samples from animals 5 A −" e−#λi(a−M) C C e−λi(a−M) months old were not used, to avoid confounding with i j . B 1ke− i(a−M) (1ke−λi(a−M))# λ D D maternal antibodies. The data were analysed at three geographical levels : The goodness of fit of λi for each serotype can be country, province and district (Fig. 1). At the country tested by likelihood ratios, comparing the maximum and province level, all samples with reliable age data log likelihood (ML) with the likelihood from the fully were used. The northern and southern parts of saturated model (SM), calculated using observed Kwazulu\Natal have different climates, and previous values ; 2*(SMkML) " χ#a,n- where n is the number # examination of the data indicated that transmission of age classes. A common λ was fitted using the data patterns might differ ; therefore, the province was for both viruses, and tested by likelihood ratios (as divided into two parts and these were analysed above) to the fit obtained with individual values of λis separately. Districts with 20 samples and a preva- for each virus. A significant lack of fit in this test lence 0 % and 100 % were analysed separately. indicates that the λis are different. Similarly, a No district had a sufficient sample size for independent common λ was fit for each virus for all districts within analysis in the 1993–5 data set ; therefore, only the a province, and compared to the individual values of earlier data were analysed at this level. Few districts λi for each district. If the prevalence of a virus in a were sampled in both surveys. All samples from a district was 0 %, a value of λ l 0 was used for province were included in the province-level analysis comparison. Districts with prevalences of 100 % were regardless of whether the district was also analysed not included in the comparisons, as λ cannot be individually. Figure 1 shows the location of districts calculated. Provinces were compared to a common λ sampled in the 1983–5 survey. In addition, 11 samples for the whole country in the same way. Programs for were available from Windhoek, Namibia, in 1983–5. calculating maximum likelihood estimates of λ, good- Routine vaccination of horses against AHS is less ness of fit tests, and comparisons between districts common in Namibia than in South Africa. Although or provinces were written in Turbo Pascal. the low sample size increases error, these data were 95 % confidence intervals were calculated for analysed for a preliminary comparison of vaccinated pairwise comparisons (estimated λpz n *st. dev) ; ! !#& and unvaccinated areas. non-overlapping confidence intervals are significantly different at the 5 % level. This method assumes that the viruses are independently transmitted, that im- munity is life-long (which is thought to be the case for Force of infection AHS [14]), and that virus prevalence is in equilibrium. It was assumed that donkeys acquire infection with It also assumes that the host population is static (i.e. each virus with an age-independent constant force of is not growing or decreasing and has a stable age infection, λi, e.g. the prevalence is a monotonically structure). Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
AHS and EE in South African donkeys 269 R for each virus is then calculated by ! AHS R l λi(LkM) ! std R l (LkM)*Nvar(λi) ! 1.0 where L is the average lifespan of the host. L was n infected 0.8 estimated as 5 years based on the age distribution of the samples and general information about the use of 0.6 Proportio donkeys in South Africa. The linear relationship 0.4 >10 8-10 between R and λ means that, for a given L and M, rs) ! 0.2 4-6 s (y significant differences for λ also hold for R . 0-6 las ! 0.0 2-4 ec Nb N M NW 0-2 G Ag FS NK RESULTS SK NC EC WC Province level analysis The overall prevalence of each virus by province for EE each virus in the 1983–5 data set is shown in Figure 2. The prevalence of EE virus is generally higher than 1.0 AHS virus, although similar patterns with respect to n infected age are observed between provinces. This pattern is 0.8 more obvious when λ is examined geographically 0.6 (Table 1) ; transmission of both viruses is higher in the >10 Proportio 0.4 8-10 rs) northeast and declines in the rest of the country. 0.2 6-8 s (y There were significant differences in λ both between 4-6 las 0.0 2-4 Nb ec provinces for each virus and between the two viruses N M NW 0-2 G FS Ag NK SK NC within provinces (Table 1). There was significant lack EC WC of fit of the model for several estimates of λ (Table 1) ; Provinc e the fit tended to be poorer when λ was higher. Fig. 2. Pattern of AHS (top) and EE (bottom) virus λ was lower for AHS virus in the 1993–5 data set infection by age in each province for the 1983–5 data set. (Table 1, Fig. 3), significantly so in the Northwest Abbreviations as in Fig. 1. Nb, Namibia. The Transvaal province. For EE virus, however, λ was higher in the region encompasses the Northern and Mpumalanga 1993–5 data set in all provinces considered, signifi- provinces. cantly so in Northwest and Free State provinces (Table 1, Fig. 3). The model did not show any AHS vs. EE significant lack of fit in the second data set (Table 1). In the 1983–5 data set, the transmission rates for EE virus were significantly higher than AHS virus in most District level analysis locations tested, at both the district and province The 1983–5 data were sufficient for district level level. However, the transmission rates (and hence R ) ! analysis in 28 districts in 7 provinces (Fig. 1). There were highly correlated at both levels (provinces : r l was a high degree of variation between districts in 0n84, districts : r l 0n9, Spearman’s rank test, P 0n01 some provinces, in particular those areas with in- for both ; Fig. 5) This relationship did not hold in the termediate levels of transmission (Fig. 4) ; λ was limited data available from Namibia, here the trans- significantly different between districts in 5 provinces mission of AHS virus exceeded that of EE virus. for AHS virus and 3 provinces for EE virus. Note that Interestingly, the correlation was not significant in the the confidence intervals are frequently large ; this is 1993–5 data set (provinces : r l 0n6, P 0n05) ; how- due to the small sample sizes. There was significant ever, there were only four provinces with estimates of lack of fit for the model in several districts (Fig. 4), λ for both viruses. indicating that the assumption of a monotonically increasing prevalence with age was not met. R was ! DISCUSSION greater than 1 in many districts (data not shown ; AHS virus : 11 districts ; EE virus : 22 districts), primarily in The transmission of AHS and EE viruses clearly vary Northern Mpumalanga and the Northwest provinces. across South Africa. As was expected, higher trans- Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
https://doi.org/10.1017/S0950268801006471 Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. 270 C. C. Lord and others Table 1. Estimated force of infection for AHS and EE iruses in proinces of South Africa ; 1983–5 and 1993–5 AHS EE 1983–5 1993–5 1983–5 1993–5 Province λ n λ n λ n λ n Northern* 0n47p0n04e 296 0n29p0n06 39 0n56p0n05e 262 0n67p0n16 38 Mpumalanga† 0n31p0n04e 133 nda 0n55p0n07e 129 nd Northwest†*‡§ 0n14p0n02e 241 0n06p0n01 141 0n29p0n03e 221 1n04p0n22 99 Gauteng† 0n10p0n03 42 nd 0 0n30p0n06e 43 nd Free State§ 0n01p0n01 98 0n01p0n00 79 0n10p0n02 73 0n60p0n15 34 North Kwazulu\Natal† 0n08p0n02 85 nd 0 0n22p0n03e 87 nd South Kwazulu\Natal† 0n06p0n02 54 nd 0 0n34p0n07 46 nd Northern Cape†* 0n08p0n01e 99 0n02p0n01 25 0n23p0n04 77 0n29p0n11 11 Eastern Cape† 0n0b 43 0n0 13 0n07p0n02 41 nd 5 Western Cape† 0n01p0n00 111 0n0 20 0n05p0n01e 94 highc 18 South Africad 0n13p0n01e 1202 0n06p0n01 317 0n25p0n01e 1073 0n70p0n08 205 λ : estimated value pst. dev ; n : number of sera used in estimating λ. a nd ; analysis not done ; either no samples from province or too few to warrant analysis. b λ l 0, none of the samples were positive ; 0 used in comparisons. c All samples were positive ; λ could not be calculated but was high. d Samples from all provinces combined. e significant lack of fit of model. λ significantly different between viruses : †1983–5 *1993–5. λ significantly different between data sets : ‡AHS §EE.
AHS and EE in South African donkeys 271 ì Not done 0 N N 0 - 0.19 0.2 - 0.39 G M G M ≥ 0.4 NW NW FS NK FS NK NC SK NC SK EC EC WC WC AHS 1983-85 EE 1983-85 N N G M G M NW NW FS NK FS NK NC SK NC SK EC EC WC WC AHS 1993-95 EE 1993-95 Fig. 3. Map of λ values by province for both viruses and both data sets. Exact values and errors in Table 1. Provinces with 100 % prevalence were assigned to the highest λ category. mission occurred in the warmer northeast. Zebra in AHS virus and EE virus can be sustained in these this area experience very high transmission of AHS areas (R 1). This is, however, sensitive to the ! virus [15, 21], and serve as a reservoir [15]. The estimates of M and L used, longer average lifespans or transmission patterns would suggest that zebra also shorter durations of maternal antibodies would raise serve as a reservoir for EE virus, but further work is the estimates of R . Areas in the South African ! required to confirm this. The data analysed here did interior and Kwazulu\Natal show patterns consistent not include identification of the serotypes of AHS with epidemic transmission, while the Cape provinces virus, as all nine serotypes circulate in the zebra appear to have only rare, sporadic transmission. Data population [15, 21] it is likely that multiple serotypes were lacking in many areas in the middle and western would be present in the donkey population as well. parts of the country, however ; it is difficult to identity Multiple serotypes also occur in EE virus [17], but the boundaries of these zones. there are few data available on the patterns of serotype The data from Windhoek, just inside Namibia to prevalence. Frequently, outbreaks of AHS outside the the north of Northwest province, indicates some of endemic areas are of only one or two serotypes at a the impact of vaccination against AHS virus and the time [5] ; serotype data from donkeys would be infor- potential for increased AHS virus transmission if mative in tracking outbreaks of individual serotypes vaccination pressure was released ; transmission of through space and time. AHS virus was higher than in either of the adjoining Estimates of λ indicate that the Northern province, South African provinces. Mpumalanga, and parts of the Northwest province These transmission patterns, which are similar have higher transmission of both viruses than the rest between AHS virus and EE virus, indicate that aspects of the country. The values of R indicate that both of transmission are shared between the two viruses. ! Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
272 C. C. Lord and others (5.23) AHS 3.00 EE Transvaal (3.48) 2.00 ì 1.00 + + 0.00 le u l-N ni i ni l-M n g e oy i la an v do ur al rto ta na wa Th Rita ha iy ut hi al lb an al be za M Vu G M Ts de Ba D id oh M +§ + Province: N+ N+ (1.95) 1.25 (1.57) Central + 1.00 0.75 ì 0.50 + + + + 0.25 + + + 0.00 Ba -NW ris ng Ko a M ster M we O o I-0 l-G ks S ris g ith on K t K its a ch l U a H bur op l-F D tian ot N ll-N l-S m Ch ke m k D tre al ob ol an go al al fo l al a ic ar Fl + +§ Province: NW + G FS NK + SK 1.00 (1.31) Cape + 0.75 ì 0.50 + + 0.25 + + + 0.00 t Ba -NC im y y C s ry h C ar es A uth re a rle ag ca l-W l-E bu le H -w Ce fri lb So be ac l es al al ly al Tu M m rk al K M +§ Province: EC NC WC + Fig. 4. Variation in λ by districts. Bars show λp95 % confidence interval ; estimates with non-overlapping confidence intervals between viruses in one location or between districts within a province for one virus are significantly different. Province abbreviations as in Fig. 1. ‡, districts significantly different within province for AHS virus, § for EE virus. j, AHS and EE viruses significantly different ; * , significant lack of fit of model. The most likely explanation, as has been previously consistent with the geographical patterns observed in suspected [17], is that the two viruses are transmitted these data, although the model used for prediction by the same vectors. The population size of the vector depends upon the presence of livestock and may not has been shown to be an important factor in many be accurate in some parts of the country. Comparisons modeling studies of vector-borne disease, including of the geographical distribution of various Culicoides AHS [20, 26]. The geographical abundance pattern of species, historical records of AHS cases, and trans- C. imicola predicted based on satellite imagery [23] is mission rate data would be valuable. Epidemics in the Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
AHS and EE in South African donkeys 273 3 M N 2 EE Ro SK G NW All NC 1 NK FS Nb EC WC 0 0 1 2 AHS Ro Fig. 5. Correlation between R for AHS and EE viruses, by province, in the 1983–5 serosurvey. Province abbreviations as ! in Fig. 1. Nb, Namibia ; all, all samples from South Africa. central and western parts of South Africa clearly valuable in understanding the epidemiology of AHS depend on many factors. Recently, outbreaks of AHS and EE viruses in South Africa. virus have been linked to El Nin4 o\Southern Os- Another consideration for the lack of fit of the cillation events [27], most likely due to the effect of model is sample size, particularly in the older age weather patterns on Culicoides abundance and zebra classes. The sampling of donkeys was deliberately migration patterns. biased towards younger animals [18] ; this could affect Clearly, the simple model of a constant force of the parameter estimates. Small sample sizes will infection was not appropriate for all of the data. At obviously skew prevalence data, and will affect the the province level, the lack of fit of the model used is, goodness of fit of models. There may, however, be in part, due to the heterogeneity of transmission and epidemiological concerns not adequately considered pooling data over large regions. The model was by this model. Using age-prevalence data for es- generally better supported at the province level when timation of λ depends upon the assumption of a the districts were not as different or the data came monotonically increasing prevalence with age ; this from fewer different districts (Table 1, Fig. 4). Pooling may not be appropriate in areas with sporadic or of data over heterogeneous groups, whether the epidemic transmission. In these areas, we would expect groups are defined by geography, age, or other factors, to see no infection in young age classes (animals born may lead to problems in fitting models [21, 28]. This after the last outbreak), with a constant prevalence could also be a factor in the lack of fit of the model in in older age classes (those exposed to past epidemics). some districts ; analysis of transmission in some areas In addition, the duration of the immune response in may require a finer spatial scale than was possible with the absence of viral challenge is not known in donkeys. these data. Preliminary attempts to use cluster analysis If older animals loose immunity, we would expect an on these data failed ; there were insufficient data to age-prevalence curve which initially rises, then falls identify reliable clusters. Sample sizes sufficient for with age. Visual inspection of the data from provinces analysis at the district level (or finer scale) for more and districts where the model exhibited significant locations, particularly in areas with high heterogeneity lack of fit, however, did not show the patterns expected in prevalence, would be required for detailed spatial from either of these hypotheses. It is most likely, analysis. This type of data and analysis would be therefore, that the lack of fit of the model to these data Downloaded from https://www.cambridge.org/core. IP address: 46.4.80.155, on 17 Mar 2021 at 20:42:14, subject to the Cambridge Core terms of use, available at https://www.cambridge.org/core/terms. https://doi.org/10.1017/S0950268801006471
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