Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024

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Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Second French Plan
for Open Science

GENERALISING
OPEN SCIENCE
IN FRANCE 2021-2024
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
• Second French Plan for Open Science

Second French Plan for
Open Science
        GENERALISING
        OPEN SCIENCE
        IN FRANCE 2021-2024

                                                               3
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Second French Plan for Open Science • Table of contents

                   Table of contents
                   Introduction                                                                      6

                   Path One
                   Generalising open access to publications                                          8

                   Measures                                                                          10

                                eneralise the obligation to publish in open access all articles
                               G
                          1    and books resulting from publicly funded calls for proposals

                               Support open access economic publishing models that do not
                         2 require the payment of articles or books processing charges
                               (“diamond” model)

                               Encourage multilingualism and the circulation of scientific
                         3 knowledge by translating publications by French researchers

                   Path Two
                   Structuring, sharing and opening up research data                                 12

                   Measures                                                                          14

                               Implement the obligation to disseminate publicly funded
                         4 research data

                               Create Recherche Data Gouv, the federated national platform
                         5 for research data

                               Promote widespread adoption of data policies that cover
                         6 the whole lifecycle of research data, to ensure that they are Findable,
                               Accessible, Interoperable and Reusable (FAIR)

 4
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Table of contents • Second French Plan for Open Science

Path Three
Opening up and promoting source code
produced by research                                                                   16

Measures                                                                               18

       Recognize and support the dissemination under an open source license
   7 of software produced by publicly funded research programmes

       Highlight the production of source code from higher education,
   8 research and innovation

   9 Define and promote an open source software policy

Path Four
Transforming practices to make open science
the default principle                                                                 20

Measures                                                                              22

       Develop and value open science skills throughout the educational
   10 and career pathways of students and research staff

       Value open science and the diversity of scientific productions
   11 in the assessment of researchers, of projects and of universities
       and research performing organizations

       Triple the budget for open science through the National Fund
   12 for Open Science and the Investments for the Future Programme

Report of the First French Plan
for Open Science                                                                      26

APPENDICES                                                                            28

                                                                                                          5
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Second French Plan for Open Science • Introduction

                   Introduction

 6
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Introduction • Second French Plan for Open Science

O
             pen science refers to the unhindered dissemination of results, methods
             and products from scientific research. It draws on the opportunity
             provided by recent digital progress to develop open access to pub-
             lications and – as much as possible – data, source code and research
methods. It is a means for publicly funded research projects to retain control over
the results they produce. It builds an ecosystem in which science becomes better
substantiated and more transparent, reproducible, effective and cumulative. It
aims to democratize access to knowledge, which is useful for teaching and training,
and for the economy, public policy, citizens and society as a whole. Finally, it con-
stitutes a lever for scientific integrity and builds citizen trust in science.

The French Plan for Open Science has provided France with a coherent and dynamic
policy in the field of open science. It was announced in 2018 by the Minister of
Higher Education, Research and Innovation, Frédérique Vidal, and is coordinat-
ed by the Committee for Open Science, which brings together the Ministry, the
universities and research performing organizations and the scientific community.
Substantial progress has been made in the three years since this policy was intro-
duced. The percentage of open access scientific publications in France has risen
from 41% to 56%. Once the National Fund for Open Science had been created, it
launched two calls for projects to promote open science publication and provid-
ed support for international structuring initiatives. The French National Research
Agency (Agence nationale de la recherche, ANR) and other funding agencies now
ask the projects they fund to make the publications available in open access and
draw up data management plans. The position of Chief Data Officer has been
created in the Ministry and a network of such Chief Data Officers is currently be-
ing deployed in the universities and research performing organizations. Around
twenty universities and research organisations now have an open science policy.
Several guides and recommendations for putting open science into practice have
been published.

The progress already made and the changes in the international context induced
us to extend, renew and strengthen our commitments by adopting a Second
French Plan for Open Science, which will take effect until 2024. With this new plan,
France is continuing its ambitious trajectory initiated by the Digital Republic Act
of 2016 and confirmed by the Research Programming Law of 2020, which includes
open science as one of the missions of researchers.

This Second French Plan extends the scope to include source code from research,
structures actions promoting data sharing and openness through the creation of
the Recherche Data Gouv platform, it increases the number of transformative le-
vers available to generalise the practice of open science and is divided up into dif-
ferent disciplines and themes. It is firmly attached to a European-wide vision and,
in the context of the French presidency of the European Union, proposes to act
in favour of open science being effectively taken into account in both individual
and collective assessments for research. This involves initiating a process of sus-
tainable transformation in order to ensure that open science becomes a common
and shared practice, encouraged by the whole international ecosystem of higher
education, research and innovation.

                                                                                                                7
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Path One

                  Generalising
                  open access
                  to publications

                                                          © Thierry Page, Atmosphere Photo

LILLIAD Learning Center Innovation, University of Lille
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Generalising open access to publications • Second French Plan for Open Science

T
        he practice of providing open access         However, 75% of open access journals can
        to scientific publications should now        be classed as “Diamond” journals. These are
        be inescapable, whether this is done         steered by the scientific community and are
        by initially publishing the text as open     not funded by direct contributions from au-
access or by placing it in an open public archive    thors, nor by mandatory contributions from
such as HAL. The aim set by the Research Pro-        readers. Instead, the publication costs are
gramming Law is to achieve 100% open access          covered beforehand by the State, a university,
publications by 2030.

The conditions set by the French National Re-
search Agency and the European Union in the
                                                          We will support
context of the Horizon Europe programme
contribute greatly to this aim. The obligation to
                                                          bibliodiversity
publish as open access should now be general-
ised to cover all research funding through pub-
                                                          so that the scientific
licly funded calls for projects, for both books
and scientific articles.
                                                          community can
Since 2018, many research funding agencies                regain control over
federated in cOAlition S have implemented,
through Plan S, a common framework com-                   the publishing system
mitting them to make all publications from re-
search they have funded immediately and obli-
                                                     a consortium of public establishments or a
gatorily available as open access. To achieve this
                                                     non-profit organisation. The recently produced
goal, cOAlition S has adopted a rights retention
                                                     OA Diamond Journals Study, carried out by re-
strategy which enables researchers to dissemi-
                                                     quest of cOAlition S, demonstrated the scope
nate their open-source texts without delay, also
                                                     and strategic nature of these journals, and it
when publishing in a subscription-only journal.
                                                     makes recommendations that France intends
In France we support this new step towards
                                                     to support and enact. The academic presses,
meeting the objectives of Plan S.
                                                     attached to universities or research organisa-
In line with the Jussieu Call for Open Science and   tions, will be strengthened, modernised and
Bibliodiversity, the scientific community should     encouraged to join forces to succeed in their
endeavour to build an ecosystem of open, ethi-       transition towards open access. HAL, the
cal and transparent scientific publishing, involv-   French national open archive, will continue
ing a plurality of editorial stakeholders, formats   to play a key role and will be improved ergo-
and languages. A particularly important issue        nomically and functionally to make it easier for
is that of diversifying the economic models          researchers and institutions to use.
for open scientific publishing. Indeed, the risks
                                                     Although the Helsinki Initiative on Multilingual-
associated with the publication fee model (in-
                                                     ism in Scholarly Communication stressed the
volving the payment of article or book process-
                                                     importance of native languages to engender a
ing charges), such as the budgetary burden,
                                                     social anchoring of scientific knowledge and a
growing inequalities between institutions and
                                                     plurality of thought systems, language barriers
disciplines and the race to produce quantity,
                                                     impede the international circulation of knowl-
are being ever better understood.
                                                     edge, which is just as important. However,
                                                     recent spectacular progress in translation tech-

               Our goal is                           nologies using artificial intelligence should allow
                                                     us to resolve this contradiction. Support will be

           to reach 100%                             provided for experimentation with translation
                                                     tools and services for scientific texts, in order

          of open access                             to encourage international dissemination of
                                                     scientific works originally in the French language

             publications                            and to facilitate access to scientific works written
                                                     in foreign languages for the French-speaking
                                                     public.
                                                                                                                               9
Second French Plan for Open Science - GENERALISING OPEN SCIENCE IN FRANCE 2021-2024
Second French Plan for Open Science • Generalising open access to publications

                   Measures

                            1                                               2                                          3

         Generalise the obligation                        Support open access                          Encourage multilingualism
         to publish in open access                        economic publishing                          and the circulation
         all articles and books                           models that do not require                   of scientific knowledge
         resulting from publicly                          the payment of articles                      by translating publications
         funded calls for                                 or books processing                          by French researchers
         proposals                                        charges (“diamond” model)

                   Continue developing the HAL                                       scientific publications and make it easier for
                   national open archive                                             researchers to do so. Invite universities and
                                                                                     research performing organizations to adopt
                   →    implify the process of making submissions
                       S
                                                                                     this strategy when negotiating with the
                       to HAL for researchers publishing on oth-
                                                                                     publishers.
                       er open access platforms across the world
                       (­CorHAL project).                                        →     upport the diversification of economic
                                                                                      S
                                                                                      models enabling a transition from subscrip-
                   →   Implement HAL’s shared governance and
                                                                                      tion towards open access with no publish-
                       long-term financing model as voted by the
                                                                                      ing fees, notably the “subscribe to open”
                       Open Science Steering Committee.
                                                                                     ­model.
                   →   Develop the integrated service for self-ar-
                                                                                 →    If publication fees still apply, they should
                       chiving, automatic collection of publica-
                                                                                       be exclusively for publications with com-
                       tions and coordination with research data
                                                                                      plete open access, and refused for hybrid
                       (winning project of the call for expressions
                                                                                     ­journals.
                       of interest in Structuring Equipment for
                       Research in the framework of the                          →    reate Open Science Badges to qualify the
                                                                                     C
                       Investments for the Future Programme –                        evaluation methods of open access publica-
                       Programme d’investissements d’avenir – PIA).                  tions, to enhance their enrichment by asso-
                                                                                     ciated data and codes, and to display their
                                                                                     user licences.
                   Building bibliodiversity
                                                                                 →    evelop and support publishing innova-
                                                                                     D
                   →    eaffirm the French commitment to cOA-
                       R                                                             tions: preprints, open peer review, exe-
                       lition S, support the rights retention strat-                 cutable papers (Jupyter notebooks), data
                       egy to provide immediate open access to                       papers, overlay journals, etc.

 10
Generalising open access to publications • Second French Plan for Open Science

Extend the global influence                          →   Create an alliance of public scientific pub-
                                                         lishers committed to open science so as to
of French research publications
                                                         promote the role they play, coordinate their
→    evelop tools to support multilingualism us-
    D                                                    initiatives and encourage resource pooling
    ing semi-automatic translation and linguis-          whenever possible.
    tic and discipline-specific expertise.
                                                     →    evelop and support a public body for the
                                                         D
→   Issue an international call for research into       dissemination and distribution of printed
     automatic translation as part of the Europe-        and digital books, to improve their visibility,
    an Research Area Network.                            particularly in bookshops.

→   In partnership with Wikimedia France, en-       →   Create a Scientific Publishing Observatory
     courage the use of findings from French re-         to bring together stakeholders in public and
     search in the global collaborative Wikipedia        private scientific publishing, research, and
     encyclopaedia.                                      scientific information.

                                                     →    upport multiplatform publishing, in XML,
                                                         S
                                                         notably through Métopes, Lodel, and the
Structure, support and modernise                         Public Knowledge Project, and explore the
French scientific publishing                             potential for shared access to services for
                                                         detecting plagiarism and monitoring manu-
→   I ntroduce a scientific publishing support          script submissions (editorial workflow).
     plan, in line with the commitment in the
     Research Programming Law.

    SUPPORT OPEN SCIENCE
    IN HUMAN AND SOCIAL
    SCIENCES

—    upport open access book publishing
    S
    through the National Fund for Open
    Science

—   I mplement a scheme for widespread
     collective licenses to permit the use
     of images protected by copyright
     in open access scientific publications,
     under a non-profit structure (article 28
     of the Research Programming Law)

—    upport the national infrastructures
    S
    for research in the human and
    social sciences, and develop a range
    of services to connect data and
    publications in human and social
    sciences, using OpenEdition,
    Huma‑Num and Métopes (winning
    project of the call for expressions
                                                                                                                                      © Cyril FRESILLON/CNRS Photothèque

    of interest in Structuring Equipment
    for Research by the PIA)

              Raman analysis of a Chinese statue’s
         pedestal at the Cernuschi museum in Paris
                                                                                                                               11
Path Two

                Structuring, sharing
                and opening up
                research data

                                                                  © Thibaut VERGOZ / IGE / LGP / PRESHINE / IRD / CNRS Photothèque

Data retrieval from a GEONOR station, near Mount Everest, Nepal
Structuring, sharing and opening up research data • Second French Plan for Open Science

O
          ur aim is to ensure that the data pro-
          duced by French public research is
          progressively structured to conform
          to the FAIR principles (Findable,
                                                             We will create
Accessible, Interoperable, Reusable), safely
preserved and, wherever possible, open to all.
                                                             Recherche Data Gouv
The obligation to open up public research data,              in order to involve
required in the Digital Republic Act of 2016,
should now be enacted in scientific practice                 all research fields
with the help of appropriate infrastructures
and support services. This obligation is limited             in active practices
by legitimate exceptions as defined by the law.
For example, exceptions can be made for pro-                 of open data
fessional confidentiality, industrial and trade
secrets, personal data and copyright-protected
                                                        catalogue will be entrusted to INRAE with
content. In these cases, data sharing practices
                                                        support from universities and other research
should still be encouraged by defining the pro-
                                                        performing organisations and will serve the
cedures to follow.
                                                        national scientific community as a whole. To
In order to implement the national policy on            support and advise researchers throughout
data, algorithms and source code as requested           the data lifecycle, “data workshops” will be
by the Prime Minister, a national Chief Data            organised across the country involving a wide
Officer will mediate a network of similar Chief         range of professions. Thematic reference
Officers working in the executive team of the           centres will conceive and issue repositories and
higher education and research institutions.             best practices for research fields or disciplines.
Through their coordinated actions, the data,            Recherche Data Gouv is founded on shared
source code and algorithms from French public           governance by stakeholders in French higher
research will be preserved, referenced, de-             education and research, and will guarantee that
scribed and promoted under open licenses.               the scientific community retains sovereignty
                                                        over the data it produces.

                                                        The actions involved in managing, preserving,
   We will encourage                                    opening up and sharing data also contribute to
                                                        the progress of scientific research. They make
      practices that                                    it possible to share the effort of collecting data
                                                        within the scientific community, and to consol-
      favor research                                    idate and multiply the results of using them.
                                                        With this in mind, all practices that promote
           data reuse                                   the reuse of research data will be encouraged
                                                        through the creation of a prize for teams which
                                                        carry out exemplary work in this domain.
Recherche Data Gouv, a federated national
                                                        France will continue to provide support for the
platform for research data, will be created to
                                                        Research Data Alliance (RDA), an international
include all research fields in the active practice
                                                        network that defines best practices in the do-
of producing open data. Recherche Data Gouv
                                                        main of research data.
will provide a multidisciplinary data repository
to complement the national and European
infrastructures already used by some scientific
disciplines. It will offer a catalogue that signposts
users to data hosted on other trustworthy
sites, and when finished, it will provide a
single location to promote visibility for all
French research data. The repository and

                                                                                                                                 13
Second French Plan for Open Science • Structuring, sharing and opening up research data

                   Measures

                           4                                                 5                                        6

         Implement the obligation                         Create Recherche Data                        Promote widespread
         to disseminate publicly                          Gouv, the federated                          adoption of data policies
         funded research data                             national platform for                        that cover the whole
                                                          research data                                lifecycle of research data,
                                                                                                       to ensure that they
                                                                                                       are Findable, Accessible,
                                                                                                       Interoperable and
                                                                                                       Reusable (FAIR)

                   Develop and structure the range                               →   Implement the recommendations of the In-
                   of support and tools on offer                                      ternational Committee of Medical Journal
                   to researchers                                                     Editors (ICMJE) by developing Data Sharing
                                                                                      Statements, which publicly detail the con-
                   →   Create Recherche Data Gouv which will                        ditions and procedures for accessing data
                        offer sovereign and certified (Core Trust                    that cannot be opened.
                        Seal) storage and signposting for research
                        data, and a range of support services for re-            →    ontinue the certification process (Core
                                                                                     C
                        searchers, through:                                          Trust Seal) for data repositories.

                      •     territorial network of endorsed “data
                           a                                                     →   upport the enactment of the European
                                                                                     S
                           workshops”, involving a wide range of                     Copyright Directive in the field of text and
                           skills and professions to provide local                   data mining (TDM) to encourage the emer-
                           support;                                                  gence of new knowledge.

                      •    t hematic reference centres that define
                            best practices for the management, des-
                            cription and opening up of data, specific
                            to each discipline or research field.

                   →   eneralise the definition and effective
                       G
                       implementation of data management plans,
                       which guarantee economical preservation
                       and the opening up and sharing of
                       documented data, thus making it possible
                       to reuse and validate them.

 14
Give recognition to and boost                           ENCOURAGE HEALTH
the reuse of research data                              RESEARCH PROJECTS
                                                        TO SIGN UP TO OPEN
→   Encourage best practices in data citation.
                                                        SCIENCE
→    ward an annual research data prize to
    A
    highlight the work of exemplary projects
    and teams in preparing to reuse or reusing      —    educe publication bias, which is the
                                                        R
    research data.                                      tendency to only publish studies that
                                                        obtain positive results, to the detriment
→    rack the changing dynamics in opening up
    T                                                   of inconclusive or negative findings.
    data sets associated with publications that
    are stored in a selection of repositories,          • Propose modifications to the national,
    through the Open Science Barometer.                  European and international rules
                                                         in order to make it obligatory to
→   Launch a Europe-wide call for proposals on          declare all individual patient data
     reusing research data as part of the Europe-        sets, whether this entails clinical
    an Research Area Network.                            trials (including non-drug trials) or
                                                         observational studies.
                                                        • Develop a declaration portal that
Coordinate and promote                                   is interoperable with the European
open data policies                                       and international schemes, by
                                                         reducing the administrative burden
→   Deploy a research data governance policy            on researchers through a single
     and create a specific role for this through         declaration. This portal will encourage
     a network of Chief Data Officers in the             and facilitate data sharing statements,
     universities and research performing                data reuse and the publication
     organizations.                                      of negative results.

→    evelop a proactive approach to opening
    D                                               —   Under the Plan France Médecine
    up data associated with articles and publi-          Génomique 2025 (French Plan for
    cations in trustworthy thematic data reposi-         Genomic Medicine), introduce a tool
    tories or in Recherche Data Gouv.                    to collect, process and use large
                                                         volumes of data (DCA – Data Collector
→    hen providing public funding for scientific
    W                                                    and Analyser) to serve healthcare
    publishing platforms and open archives, en-          and research.
    courage collaboration with Recherche Data
    Gouv.                                           —   I n response to the coronavirus pandemic,
                                                         open up all results from the EMERGEN
                                                         programme, which aims to increase
                                                         efforts to sequence the variants
                                                         of the virus present in the country.

                                                                              Experiment with samples
                                                          at the Imagine Institute of Genetic Diseases,
                                                                Necker-Enfants Malades Hospital, Paris
                                                                                                               © Inserm/Delapierre, Patrick

                                                                                                          15
Path Three

                 Opening up
                 and promoting source
                 code produced
                 by research

                                                                                       © Inria / Photo M. Magnin

Code optimizing for oceanographic data analysis by the GEOSTAT project-team at Inria
Opening up and promoting source code produced by research • Second French Plan for Open Science

S
       oftware plays a key role in scientific
       research, and it can be a tool, a result,
       and a research object. Making software
       source code available, with the option
                                                          Distribution
of modifying, reusing and disseminating them,
is a major requirement to ensure the repro-
                                                          of software
ductibility of scientific findings and to support
the creation and sharing of knowledge, in keep-
                                                          products under
ing with the open science ethos.                          open source licence
In order to implement the national policy on
data, algorithms and source code as requested             will be preferred
by the Prime Minister, we aim to ensure that the
source code and software produced through
                                                     France will support the development and pre-
French public research are developed, sustain-
                                                     servation of source code – inseparable from
ably maintained, preserved and treasured. As
                                                     the support of humanity’s technical and scien-
such, the remit of Chief Data Officer in the Min-
                                                     tific knowledge – and it will, from this position,
istry of Higher Education, Research and Innova-
                                                     continue its support for the Software Heritage
tion has been expanded to include algorithms
                                                     universal archive. So as to create an eco-
and source code from research.
                                                     system that connects code, data and publica-
                                                     tions, the collaboration between the national
                                                     open archive HAL, the national research data
         The opening                                 platform Recherche Data Gouv, the scientific
                                                     publishing sector and Software Heritage will be
          of software                                ­strengthened.

         source code                                 In order to increase the visibility of software
                                                     and recognise its contribution to research, a
            is a major                               catalogue of these productions will be built
                                                     and made widely accessible. An open source
    challenge for the                                research software prize will be created to show-
                                                     case and award teams who carry out exemplary
     reproductibility                                work in this field.

  of scientific results                              To facilitate the coordination of the open
                                                     source software communities at a national and
                                                     international level, a Source Code and Software
                                                     College will be created within the Committee
Scientific software stacks are hugely complex        for Open Science. Links will also be forged be-
and sometimes combine hundreds of programs           tween the Open Software Task Force at the
representing millions, even tens of millions of      French Interministerial Directorate for Digital
lines of code. Efforts to develop these stacks       Technology, and the European Open Science
should be pooled at the scale of the interna-        Cloud (EOSC), the Research Data Alliance (RDA),
tional scientific community in the widest sense:     the Research Software Alliance and FORCE 11.
academics, industry and citizens. This impetus
has today become a key lever in research and
innovation. Also, priority will be given to the
dissemination of software productions as open
source software – published under a license
recognised by the Free Software Foundation
and Open Source Initiative, in compliance with
the legal constraints.

                                                                                                                            17
Second French Plan for Open Science • Opening up and promoting source code produced by research

                   Measures

                          7                                              8                                         9

        Recognize and support                          Highlight the production                    Define and promote
        the dissemination under                        of source code from                         an open source software
        an open source license                         higher education,                           policy
        of software produced                           research and innovation
        by publicly funded
        research programmes

                   Define and promote                                        Recognise source code
                   an open source software policy                            as a contribution to research
                   →    roduce a National Charter for Open Source
                       P                                                     →   Create an open source research software
                       Software coming from higher education,                     prize which rewards teams and projects for
                       ­research and innovation.                                  exemplary work in this domain.

                   →    evelop the link between data and software
                       D                                                     →   rovide greater recognition for software
                                                                                 P
                       through a network of Chief Data Officers                  production in the career of researchers, re-
                       in the various universities and research                  search support staff and in the assessment
                       performing organi­zations.                                of research organisations.

                   →    roduce recommendations for funding ­bodies
                       P                                                     →    onitor over time the production of code
                                                                                 M
                       to best support software development.                     and software by French research teams so
                                                                                 as to identify and assess their dynamics,
                   →   Improve the skills of commercialization ser-             openness and impacts through the Open
                        vices for the economic models associated                 Science Barometer.
                        with producing open source software.
                                                                             →    uild a catalogue of software resulting from
                                                                                 B
                   →    upport Software Heritage and recom-
                       S                                                         research, using a standardised metadata
                       mend it for the archiving and referencing of              model that is shared by all the stakeholders
                       source code.                                              in higher education, research and innovation.

 18
Opening up and promoting source code produced by research • Second French Plan for Open Science

Coordinate the communities that                       Build an ecosystem that connects
use source code and open source                       code, data and publications
software
                                                      →   I n the context of public funding for journals
                                                           and conferences, recommend adopting a
→   Create a College of Experts for source code
     and software within the Committee for                 policy of open source software associated
     Open Science.                                         with the articles, developing articles about
                                                           the software and experimenting with ap-
→   stablish a long-lasting link between the
    E                                                      proaches that link articles, data and code.
    Committee for Open Science and the Open
    Software Task Force at the French Intermin-       →    evelop proper coordination between soft-
                                                          D
    isterial Directorate for Digital Technology.          ware forges, open publication archives,
                                                          data repositories and the scientific publish-
→   
    Establish a link with national and interna-           ing sector.
    tional stakeholders, particularly the Soft-
    ware Working Group at the EOSC, the FAIR          →    ropose standardising the Software Heritage
                                                          P
    for Research Software Working Group at                Identifier (SWHID), which will complement
    the RDA, FORCE11 and the Research Soft-               the DOIs for software.
    ware Alliance – ReSA.

    ENCOURAGE CROSSOVERS
    BETWEEN OPEN SCIENCE
    AND ARTIFICIAL
    INTELLIGENCE

—    o predict and assess changes in
    T
    biodiversity caused by climate change
    and/or human activities, support the
    ANR’s “Artificial intelligence research
    in the field of biodiversity” challenge
    by supplying all participating research
    projects with shared data sets.

—    eed or develop machine learning
    F
    bases for the automated translation
    of scientific texts.

—    upport the creation of a reference
    S
    centre for digital pathology to stimulate
    innovations in artificial intelligence
    in the field of pathology as part
    of an organised challenge.
                                                                                                                                    © Inria / Photo S. Erôme - Signatures

                          Graph structures study
               by the TYREX project-team at Inria

                                                                                                                             19
Path Four

                 Transforming
                 practices to make
                 open science
                 the default principle

                                                                                                       © Christophe HARGOUES / LMGC / CNRS Photothèque

Research team at the laboratory of mechanics and civil engineering (CNRS, University of Montpellier)
Transforming practices to make open science the default principle • Second French Plan for Open Science

O
           pen science should become the de-           data requires new skills and leads to the emer-
           fault principle for researchers and it      gence of new professions which are important
           should constitute a criteria of excel-      to develop, recognise and value.
           lence in research, as is now the case
in the Horizon Europe programme. For this,             Aligning the assessment and training policies
the higher education and research ecosystem            will make it possible to reduce the contradic-
must be transformed to align the incentives,           tory demands to which researchers have been
strengthen capacity and increase recognition           subject, so that the benefits of open science
of the efforts made.                                   are fully understood. With this objective in
                                                       mind, researchers’ access to public data and
                                                       private data of general interest will be made
                                                       easier, through the creation of a mediator for
       Transformation                                  data of general interest. Adopting open licens-
                                                       es for data, publications and source code will
   of the assessment                                   help to free up the circulation of scientific find-
                                                       ings, and the generalisation of the ORCID iden-
   system is required                                  tifier for researchers will consolidate their dig-
                                                       ital identity and increase the visibility of their
    in order to foster                                 work.

      long‑term open                                   To meet the ambitious objectives of this new
                                                       plan, open science policies should be strength-
    science practices                                  ened and amplified. The National Fund for
                                                       Open Science will be continued and its field
                                                       of action expanded. We propose that funding
To ensure these practices persist over time, the       from the PIA is used to intensify and diversity its
assessment system for researchers, laborato-           actions. A firm commitment from universities
ries, universities and research performing or-         and research performing organizations to for-
ganizations must be changed so that it becomes         malise and implement open science policies will
coherent with the principles of open science.          enable their widespread territorial deployment.
In line with the San Francisco Declaration on Re-      In parallel, France will increase its presence in
search Assessment (DORA) and the Leiden Man-           the international bodies for open science, par-
ifesto for Research Metrics, this involves reduc-      ticularly the EOSC, to support the construction
ing the importance of the quantitative aspect          of an effective, regulated, transparent and resil-
to the benefit of a more qualitative approach,         ient ecosystem, which serves to help the scien-
taking into account – beyond what publications         tific community and society as a whole.
do – the plurality of research findings, making
                                                       Finally, open science policies must be better
reasoned use of indicators and rewarding co-
                                                       monitored and their impacts measured through
operation and openness over competitiveness
                                                       a consolidation of the Open Science Barometer
and secrecy. As part of the French Presidency
                                                       and an expansion of its scope to include new
of the European Union, France intends to hold
                                                       aspects. These policies will be informed by con-
a European event to promote open science at
                                                       tributions from research, through the creation
the Académie des sciences (Paris). It will also
                                                       of an Open Science Lab dedicated to devel-
encourage the creation of a coalition of Euro-
                                                       oping “research on research”, and through the
pean researchers who commit to implementing
                                                       launch of a dedicated call for proposals by the
operational, reciprocal and legible transforma-
                                                       French National Research Agency.
tions in their assessment practices.

To transform daily practices, the concept of
open science should be present throughout the
research training programmes, from bachelor’s
degree level to senior researchers, with an em-
phasis on the strategic stage of the doctorate.
The management and opening up of research

                                                                                                                                21
Second French Plan for Open Science • Transforming practices to make open science the default principle

                   Measures

                          10                                               11                                         12

         Develop and value                                Value open science and                          Triple the budget
         open science skills                              the diversity of scientific                     for open science
         throughout                                       productions in the                              through the National
         the educational                                  assessment of researchers,                      Fund for Open Science
         and career pathways                              of projects and                                 and the Investments
         of students                                      of universities and research                    for the Future Programme
         and research staff                               performing organizations

                   Recognise open science                                        →    ncourage the journals’ editorial commit-
                                                                                     E
                   in assessments                                                    tees and scientific publishers to request
                                                                                     that the data and code associated with
                   →   In the context of the French Presidency of                   the texts submitted be provided, to take
                        the European Union, organise E      ­uropean                 these into account in the assessment pro-
                        Open Science Days at the Académie des                        cedures and to make public their policies
                        Sciences in Paris. These will propose creating               concerning the data and code linked to
                        an international coalition focussed on taking                the publications.
                        open science into account in the assessment
                        of researchers, projects and research institu-           →    romote the use of narrative CVs to reduce
                                                                                     P
                        tions. They will also emphasize open access                  the importance of quantitative assessments
                        with no publication fees and the importance                  to the benefit of qualitative ones, and exper-
                        of source code in open ­science.                             iment with an “openness profile” on O ­ RCID.

                   →   I nclude the open science principles and best
                        practices in the Hcéres reference files and
                                                                                 Develop and recognise the skills
                        strengthen cooperation between the Hcéres
                        and the Committee for Open Science.                      and professions of open science

                   →    educe the influence of the journal impact
                       R                                                         →   Consider data literacy as a set of key
                       factor, starting with the removal of all refer-                skills and develop the range of initial and
                       ences to this indicator and to H-index in the                  continuing education degree programmes
                       texts of calls for projects and in the applica-                in data science and engineering by building
                       tion forms.                                                    on existing initiatives.

 22
Transforming practices to make open science the default principle • Second French Plan for Open Science

→   ncourage the development of teaching
    E                                                  Encourage stakeholders
    units or training pathways in open science at
                                                       in higher education and research
    bachelor’s and master’s level and strength-
    en open science training for doctoral stu-         to adopt an open science policy
    dents, by defining a frame of reference for
    open science training for doctoral schools,        →   ncourage universities, research organisa-
                                                           E
                                                           tions, prestigious universities and engineer-
    by creating an open science thesis prize,
                                                           ing schools to adopt an open science plan,
    and by offering thematic booklets from the
                                                           which is made public and is closely super-
    Passport for Open Science.
                                                           vised.
→   Increase awareness-raising and training
                                                       →    ncourage these stakeholders, and the na-
                                                           E
     programmes in open science for senior
                                                           tional research infrastructures, IDEX, I-SITE,
     researchers.
                                                           European universities and projects funded
                                                           by the PIA to request open-source publi-
→    upport the evolution in skills and career
    S
    pathways for research staff, with a notable            cations, data and source code and to offer
    emphasis on valuing skills and professions             support to researchers in these fields.
    linked to managing data lifecycles and de-
    veloping source code.                              →    ncourage the universities and research
                                                           E
                                                           performing organizations who have signed
                                                           DORA to actively inform their assessment
→   In the competency framework for research-
    ers, research engineers and technicians, in-           committees and support them in the ef-
    troduce a subset of competencies linked to             fective implementation of the principles
    open science.                                          adopted.

    SUPPORT THE DEVELOPMENT
    OF OPEN SCIENCE IN THE
    FIELD OF CLIMATE, EARTH
    SYSTEMS AND BIODIVERSITY
    STUDIES, IN LINE WITH
    THE CLIMATE LAW

                                                                                                                                        © Hubert RAGUET/CNRS Photothèque
—    ake use of the recommendations
    M
    of the “observation of natural
    environments and systems” task force
    that are validated, to strengthen
    research services, such as long‑term data
    integration services and resulting models.

—    o accelerate and strengthen climate
    T                                                    Observation of plant behavior
    and earth system studies, boost                      at the European Ecotron in Montpellier
    the development of a framework                            data sets for each field. This involves
    for data preservation and description                     encouraging dialogue between the
    practices in these fields, and generalise                 scientific domains to facilitate integrated
    their referencing in the research                         ecosystem approaches. For example,
    infrastructures of the national road map                  this can be useful when studying
    or in Recherche Data Gouv.                                interactions between the ocean and
                                                              the atmosphere, or the continental
—    upport data set harmonisation and
    S
                                                              surface and the atmosphere.
    interoperability to build large reference

                                                                                                                                23
Second French Plan for Open Science • Transforming practices to make open science the default principle

                   →    ecommend the use of open licenses for
                       R                                                         Simplify researchers’ lives
                       research productions – the (French) public
                                                                                 through open science
                       license, one of the (international) Creative
                       Commons licenses or the specific open li-                 →   In line with the national policy on data, al-
                       censes for software – to promote the reuse                     gorithms and source code as requested by
                       of publications, data and source code and                      the prime minister, accelerate researchers’
                       to protect their provenance.                                   access to public data and create a mediator
                                                                                      to facilitate access to data of public inter-
                   →     reate a working group for participative
                        C
                                                                                      est owned by private parties. In particular,
                        research within the Committee for Open
                                                                                      this will help to increase the contribution
                       ­Science.
                                                                                      researchers make to designing and assessing
                                                                                      public ­policies.
                   →    ncourage all stakeholders in higher educa-
                       E
                       tion and research to get involved in shared
                       work on open educational resources to                     →    ncourage researchers to adopt the ORCID
                                                                                     E
                                                                                     identifier to consolidate their digital identi-
                       make them more visible and easier to share
                                                                                     ty and increase the visibility of their work,
                       and encourage their reuse.
                                                                                     and propose adding data from ORCID to

                        MAKE USE OF THE RESEARCH
                        INFRASTRUCTURES
                        WHICH HAVE SIGNED
                        UP WITH THE NATIONAL
                        ROAD MAP TO TRANSFORM
                        PRACTICES AND GENERALISE
                        OPEN SCIENCE

                                                                                                                                       © Sébastien CHASTANET/CNRS Photothèque
                   —    I nvite infrastructures to include
                         in their access conditions the principles
                        of open access publication
                        and of opening by default of data
                        and source code.

                   —    I nvite infrastructures to formalise
                         their open science policies by making
                         a strategic document public, and
                         to effectively implement the FAIR
                                                                                   Aerial view of the Pic du Midi Observatory
                         principles and data management plans
                         by and for their users.
                                                                                   —     et infrastructures involved
                                                                                        G
                   —     rovide each infrastructure with
                        P                                                               in assembling and hosting large reference
                        a persistent digital identifier (funder                         data sets and guidelines for practices
                        ID) that the researchers will be asked                          by discipline and theme for preserving,
                        to mention in their publications,                               describing and referencing
                        code and data produced through                                  research data.
                        this infrastructure.
                                                                                   —    I mplement the winning projects
                   —     ncourage infrastructures within a policy
                        E                                                                of the call for expressions of interest
                        of recruiting professionals responsible                          in Structuring Equipment for Research
                        for processing, quality checking,                                by the PIA which strengthen the
                        describing and preserving data.                                  development of infrastructures,
                                                                                         platforms and services for thematic data.

 24
Transforming practices to make open science the default principle • Second French Plan for Open Science

    the research information systems to limit           Develop the Open Science
    the number of repeated submissions.
                                                        Barometer as a tool for monitoring,
→    nrich ScanR, a search engine for research
    E                                                   observing and measuring
    and innovation which brings together data           the impact of open science
    from laboratories, research project authors,
    public funds and businesses.                        →    xpand and sustain the Open Science Barom-
                                                            E
                                                            eter by introducing new indicators that cover
                                                            more than just publications:
Participate in the European
                                                          •     o monitor declarations of health studies,
                                                               T
and international open science                                 particularly clinical trials;
landscape
                                                          •     o monitor the opening up of data and
                                                               T
→     nsure that sovereign solutions are adopt-
     E                                                         source code;
    ed to allow higher education and research
    stakeholders to keep control over their               •    To monitor data sharing statements;
    open science services for publications, data,
    source code, videos and open educational              •    o monitor the uses society makes of
                                                               T
                                                               open science;
    ­resources, etc.
                                                          •     o monitor the universities and research
                                                               T
→    articipate in the governance of standards
    P
                                                               performing organizations’ open science
    for metadata and persistent digital identi-
                                                               policies, ideally at the European level;
    fiers for research objects and stakeholders
    (Crossref, DataCite, ORCID, ROR, etc.) and            •    To monitor accessibility for disabled
    in the governance of open science services                  people to French scientific publication
    (Directory of Open Access Journals, Direc-                  platforms;
    tory of Open Access Books, OPERAS, etc.)
                                                          •    To monitor publication fees for articles
→    ncourage the creation of an open ecosys-
    E                                                           and books.
    tem for citations as an alternative to propri-
    etary environments by supporting the Initi-
    ative for Open Citations and the Open­Alex
                                                        Develop research on research
    project run by OurResearch.
                                                        in order to advance open science
→    reate a post of national open science co-
    C
    ordinator and a network of national open            →   Create an Open Science Lab to develop re-
    science coordinators, the Council of nation-            search on research, with the aim of inform-
    al open science coordination (CoNOSC).                  ing and guiding open science policies and
                                                            encouraging their enactment in the differ-
→    ontinue to structure the French communi-
    C                                                       ent disciplines. The Open Science Lab could
    ty in its contribution to the EOSC: promote             be part of an Open Science Observatory to
    the EOSC membership to French research                  be created at international level.
    organisations, moderate the community of
    French EOSC stakeholders, organise an an-           →    ropose that the ANR launch an annual call
                                                            P
    nual EOSC-France event.                                 for projects involving research on research
                                                            with an open science perspective.
→    ctively encourage French open science
    A
    services to sign up to the EOSC catalogue
    of services.

→   Include commitments to support open sci-
     ence in the Open Government Partnership
     (OGP).

                                                                                                                                 25
Report

     First French Plan
     for Open Science

     On 4 July 2018, Frédérique Vidal, the Minister        →    he French National Research Agency re-
                                                               T
     for Higher Education, Research and Innovation,            quests that the research projects it funds
     launched the French Plan for Open Science.                draw up data management plans (DMP).
     Three years after this plan was introduced, the
     report testifies to the success of the mobilisation   →    he role of ministerial Chief Data Officer
                                                               T
                                                               was created at the Ministry of Higher Educa-
     and to a committed transformation. A budget
                                                               tion, Research and Innovation and a network
     of 15.8 million euros has been allocated.
                                                               of Chief Data Officers is currently being set up
                                                               in the universities and research performing
                                                               organizations.
     Theme one: Generalising
     open access to publications                           →   The Recherche Data Gouv project was for-
                                                                malised.
     →    he National Fund for Open Science was
         T
         created.                                          →    he National Fund for Open Science provid-
                                                               T
                                                               ed support for the Research Data Alliance
     →    he HAL national open archive received some
         T                                                     and a French section was created.
         exceptional funding and introduced sustaina-
         ble economic and governance ­models.
                                                           Theme three: Adopting a sustainable
     →   he French National Research Agency
         T
         requests that all scientific articles from        approach at European and
         the projects it funds are published in open       international level
         access journals.
                                                           →   The Passport for Open Science for PhD
     →    wo calls for proposals in “open scientif-
         T                                                      students and other practical guides were
         ic publishing and editing” were launched,              published.
         worth nearly 5 million euros.
                                                           →    rance contributes to structuring and gov-
                                                               F
     →   The Open Science Barometer was created               erning the EOSC.
          in 2018.
                                                           →    he National Fund for Open Science sup-
                                                               T
                                                               ported the international open science
                                                               infrastructures (DOAB, PKP, OpenCitations,
     Theme two: Structuring                                    Software Heritage).
     and opening up research data
                                                           →    wenty research performing organisations
                                                               T
     →   he French National Research Agency
         T                                                     adopted an open science policy, and the
         launched a flash call for proposals worth 2.5         Conference of University Presidents ­created
         million euros to accelerate development in            a network of open science advisors in the
         response to the issues of data management.            universities.

                                                           To find out more, read the full report of the
26                                                         First French Plan for Open Science 2018-2021.
Report of the First French Plan for Open Science • Second French Plan for Open Science

                                                                      Mandatory open access
                                                                      for publications
Announcement of the                                                   from research projects           Flash call for proposals
First French Plan for Open                                            financed by the French           on open science                 Creation of the
Science by Frédérique Vidal            ouvrirlascience.fr             National Research                and research data                Open Science
at Lille                               website launch                 Agency (ANR)                     by the ANR                         Committee

      July                                 December                           January                           March                         April
     2018                                    2018                             2019                              2019                         2019

                 First edition of the Open       First edition of the Open
                    Science National Days        Science Barometer:                        Support given to the Research Data
                                                 41% of French publications                 Alliance and to Software Heritage              September
                                                                                                                                             2019
                                                 are open access

                                                                                                    Second edition of the Open
                                                                                                            Science Barometer:
                                                                                                  49%    of French publications
                                                                                                                are open access             December
                     Adoption of a new funding                                                                                               2019
                     and governing model for the                                                          First call for proposals
                     national open archive (HAL)                                                  of the National Fund for Open
                                                                                                  Science (FNSO) on open acces
                                                                                                             scientific publishing

                                July                                             January
                               2020                                               2020

                                 Publication
                                                                FNSO gives support to 3 fundamental
                                 of the Passport
                                                                international Open Science projects by:
      July                       for Open
                                                                   OpenCitations
                                 Science,
     2020                        a practical
                                                                   Directory of open access books                                 Formalization of the
                                                                   Public Knowledge Project                                      Recherche Data Gouv
                                 guide for PHD
                                 students                                                                                           project, a national
                                                                                                                           plateform for research data

                          November                                                      January
                           2020                                                         2021
                                                                                                                                             March
                                                                                                                                             2021

             22 projects       Creation of the                          Third edition of       Second call for proposals
               won the first   "Chief Data Officer"                   the Open Science         of the National Fund
                  FNSO call    position at the Ministry                     Barometer:         for Open Science
              for proposals    of Higher Education,
                               Research                               56% of French            on open access scientific
                                                                                               publishing
              2,6 M€           and Innovation
                                                                            publications
                                                                        are open access

                                                                                                             Second French Plan                July
                                                                                                               for Open Science              2021

                                                                                                                                                       27
Second French Plan for Open Science • Appendices

                   APPENDICES

                   Lexicon                                                                                 Abbreviations
                   Algorithm: set of processes or            Open science skills: Skills relative to the   and organisations
                   rules to resolve a type of problem.       publication system, data structuring,
                   In computing, algorithms are then         legal rights, new digital uses and best       ANR – Agence nationale de la
                   transposed into source code,              practices for open science.                   recherche / French National Research
                   ultimately leading to executable                                                        Agency
                   software.                                 Persistent Identifier (PID): identifier
                                                             attributed to a person or object              Crossref – a Digital Object Identifier
                   Bibliodiversity: in the publishing        that is unambiguous and persists              (DOI) Registration Agency for
                   world, this corresponds to a diversity    over time.                                    scientific publications
                   of publishing bodies, as opposed                                                        DataCite – a Digital Object Identifier
                   to publishing concentration.              Publication bias: tendency to only
                                                             publish positive results, or to publish       (DOI) Registration Agency for research
                   The concept also covers a diversity                                                     data
                   of editorial formats (journals, books,    less negative or inconclusive results.
                   encyclopedias, etc.) and languages.       Due to this fact, the meta-analyses,          DORA – San Francisco Declaration
                                                             which synthesize all studies on the           on Research Assessment
                   Chief Data Officer: this officer works    subject, cannot provide a complete
                   closely with the governance of the        overview of the research carried              EOSC – European Open Science Cloud
                   universities and research performing      out. For example: In Europe today,
                   organizations to coordinate               50% of clinical trials for cancer publish     HAL – French national open
                   stakeholder actions in inventorying,      no results at all. Many different             archive managed by the Centre
                   governing, producing, circulating         strategies have been put in place             pour la communication scientifique
                   and using the data, algorithms and        to compensate for this publication bias:      directe (Centre for Direct Scientific
                   source code produced by research.         journals publishing negative results,         Communication - CCSD), a mixed
                   Not to be confused with the               publication of results in Clinicaltrials.     service unit
                   Delegate for data protection, nor         gov, submitting articles based on their       Hcéres – Haut conseil de l’évaluation
                   (in the information technology field)     methodology before obtaining the              de la recherche et de l’enseignement
                   with the database administrator.          results (known as registered reports).        supérieur / High Council for Research
                   Data paper: as opposed to                 Publication fees: some (25%) open             and Higher Education Assessment
                   a traditional scientific article          access journals ask authors to pay            IDEX – Initiative d’excellence /
                   that uses, analyses and interprets        publication fees, also known as APCs          Benchmarks of Excellence, research
                   scientific data, a data paper gives       (article processing charges), to fund         universities with global influence
                   a detailed description of one or more     the editorial work. However, other
                   sets of data so as to facilitate their    funding models do exist.                      I-SITES – Initiative Science, Innovation,
                   understanding and potential reuse.                                                      Territoires, Economie / Science,
                                                             Publications: scientific                      Innovation, Territories and Economy
                   Diamond model: 75% of open                communications resulting from                 Initiative, universities that use
                   access journals do not ask authors        the work of researchers. These                their thematic scientific attributes
                   to pay publication fees. In this          publications are subject to peer              to develop a partnership strategy
                   open access publication model,            review.                                       with the business world
                   the publication costs are covered
                   beforehand by the State, a university,    Public interest data: data possessed          ORCID – Open Researcher and
                   a consortium of public establishments     by legal persons governed by private          Contributor ID, a persistent digital
                   or a non-profit organisation.             law that could serve for descriptions,        identifier for researchers
                                                             elucidations or actions for the public
                   FAIR principles: the notion               interest, or presenting an interest           OGP – Open Government Partnership,
                   of FAIR data describes methods            for public research.                          organisation uniting 78 countries and
                   of constructing, preserving,                                                            hundreds of civil society organisations
                   presenting and publishing data            Research data: factual records                for transparency in policy-making
                   in a way that ensures the data are        (figures, texts, images, sound, videos,
                   Findable, Accessible, Interoperable       etc.) used as primary sources for             PIA – Programme d’investissements
                   and Reusable.                             research and which are generally              d’avenir (French Investments for the
                                                             accepted by the scientific community          Future Programme)
                   “Hybrid” journals: these journals         as being necessary to validate the
                   are circulated by subscription while      research findings.                            RDA – Research data alliance.
                   asking their authors to pay publication                                                 Research Data. Sharing without
                   fees (also called APCs) so that their     Software programme: an executable             barriers
                   article can be published as open          computer program.
                                                                                                           ROR – Research Organization Registry,
                   access. This payment of additional        Source code: a set of statements              unique identifiers for research
                   fees to subscription-only journals        or instructions comprising a computer         organizations
                   introduces double-dipping.                programme in a programming
                   Open data and shared data: open           language. Source code are generally
                   data are accessible to all. Shared data   presented in the form of a set of text
                   are accessible under authorisation        files that can be read by a user and are
                   to identified individuals or groups.      executable by a machine. Source code
                                                             is the representation of a software
                                                             programme that enables the user
                                                             to make modifications.

 28
Appendices • Second French Plan for Open Science

APPENDICES

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