MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018

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MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
MICROSCOPY
AUSTRALIA
RESEARCH
HIGHLIGHTS
2018
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
We invite you to explore how our
       collaborative research infrastructure
       empowers discovery and innovation.
       See how this new knowledge
       can deliver a healthier and more
       prosperous Australia.

       CONTENTS
       NEWS FROM THE TEAM                                                                2
       STATS		                                                                           4
       NETWORK                                                                           6
       EQUIPMENT & EXPERTISE                                                             8
       TECHNIQUE DEVELOPMENT                                                            10
       AUSTRALIAN NANOTECH – BUILDING BUSINESS                                          12
       SUPPORTING MEDTECH & PHARMA                                                      14
       STORIES AND STRUCTURES – NEW CONNECTIONS                                         16
       IMC19		                                                                          18
       GLOBAL BIOIMAGING – EXCHANGE OF EXPERIENCE                                       20
       FUTURE DIRECTIONS                                                                21
       RESEARCH OUTCOMES & SOCIAL IMPACT                                          22 – 43
       CONTACTS                                                                         44

       Image: Electron backscatter diffraction of a high entropy alloy.
       Dr Mehdi Eizadjou, Lena Frommeyer, Prof. Simon Ringer and Prof. Gerhard Wildetoo.
       Cover image: Autofluorescent confocal image of a living Melaleuca (paperbark) leaf.
30μm
       Area is approximately 1mm across. Paul Rigby.
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
MINISTER                                                                                        CHAIR                                                                                                  CEO

                                          Senator the Hon. Dan Tehan,                                                            Dr Gregory R. Smith                                                                              Prof. Julie Cairney
                                          Minister for Education and Training                                                    Chair of Board                                                                                   Chief Executive Officer

NEWS FROM   I want to congratulate Microscopy Australia                         2018 has been a very significant year            Microscopy Australia proudly launched its       Our users rely heavily on access to              This budget provided a welcome
                                                                                for this organisation. Most notably              Stories and Structures – New Connections        our sophisticated microscopy facilities          investment in our National Collaborative
            on what has been a busy and successful year.                        it has involved a name change with               exhibition this year. The event was             to do world-leading research. With               Research Infrastructure Strategy, including
                                                                                the former Australian Microscopy                 introduced to the public during Sydney’s        surveys indicating that more than 90%            $15M above business as usual for
            The Morrison Government is committed to supporting

THE TEAM
                                                                                and Microanalysis Research Facility              2018 Vivid Ideas festival. It has since         of users are satisfied with our services,        Microscopy Australia. This investment, in
            industry, business and the research sector as it drives             becoming the more user-friendly,                 commenced a tour of the country.                it is with some trepidation that we have         conjunction with substantial co-investment
            innovation across Australia.                                        simpler-named Microscopy Australia.              By contrasting high resolution microscopy       changed our long-established ‘AMMRF’             from our host universities and state
                                                                                                                                 images with traditional forms of imagery        brand to Microscopy Australia. The new           governments, will support our new five-
                                                                                The 19th International Microscopy
            Microscopy Australia continues to empower research for              Congress (IMC) came to Sydney in 2018.
                                                                                                                                 produced by noted Aboriginal artists, the       name is simple and descriptive and we            year investment strategy.
                                                                                                                                 exhibition provides a unique event that is      feel that it clearly conveys our vision
            social impact that is vital to our future economic prosperity.      This four-yearly event is effectively a global
                                                                                                                                 attracting wide interest.                       and purpose. The response amongst
                                                                                                                                                                                                                                  This plan includes much-needed
            You produce leading edge research across a wide variety             Olympics of Microscopy. Since 2010, a
                                                                                                                                                                                 our stakeholders and users alike has
                                                                                                                                                                                                                                  investment in important emerging
                                                                                local organising committee had sought            Very pleasingly, the inclusion of                                                                microscopy technologies including
            of fields, while launching your new name and branding and           to win the IMC for Australia. It made very       Microscopy Australia in the Federal
                                                                                                                                                                                 been overwhelmingly positive and I am
                                                                                                                                                                                                                                  atomic-scale microscopy, cryo-electron
                                                                                                                                                                                 confident that it will serve us well into
            exploring new and exciting ways to share your successes –           strong submissions both in Rio de Janeiro        Government’s NCRIS 2018 budget
                                                                                                                                                                                 the future.
                                                                                                                                                                                                                                  microscopy and high-sensitivity
            both here in Australia and around the world.                        (2010) and in Prague (2014), at which time       round was announced before the                                                                   microanalytical tools. Access to these
                                                                                the Sydney bid for 2018 was successful.          last financial year ended. A multi-year         As we approach the end of 2018, we               capabilities and the associated expertise is
            Your collaboration with the Powerhouse Museum for the               Ultimately, a very highly regarded               co-investment strategy now enables the          reflect on a very significant year. Along with   crucial for Australia to maintain a world-
                                                                                international conference and exhibition          acquisition of major new instruments            our name change, other highlights include        leading position in geoscience, medical,
            Stories and Structures – New Connections exhibition, as part        was run in Sydney last September with            at various Microscopy Australia nodes.          our participation in the organisation of the     biological, materials, plant and nano
            of the 2018 Vivid Ideas program, explored an interesting link       over 2,000 participants. Microscopy              These new microscopy techniques and             19th International Microscopy Congress           sciences. A small increase in our federal
            between the world of art and the world of research.                 Australia played a significant part at this      related capabilities will permit Microscopy     in Sydney in September, the launch of the        operational funding has also provided an
                                                                                IMC event.                                       Australia to continue supporting a world-       Stories and Structures – New Connections         opportunity for us to expand the national
            I wish Microscopy Australia every success in 2019 and               As part of our international partnership
                                                                                                                                 leading position in technologies including      exhibition and associated Vivid Ideas            network by supporting open access to
                                                                                                                                 geoscience, medical, biological, materials,     event, and of course, good news in the           infrastructure and technical experts at
            beyond. Keep up the good work.                                      with Global Bio-Imaging (GBI), Microscopy
                                                                                                                                 and horticulture. Most critically, this NCRIS   May budget.                                      a new partner facility in Victoria. As we
                                                                                Australia worked with GBI and the National
                                                                                                                                 round has also funded the inclusion of a                                                         expand into Victoria, we think our new
                                                                                Imaging Facility to organise and host three
                                                                                                                                 new Victorian node to join the Microscopy                                                        name reflects the wider reach of our
                                                                                highly successful workshops in Sydney
                                                                                                                                 Australia partnership. Monash University                                                         national facility.
                                                                                after the IMC. These brought bioimaging
                                                                                                                                 has been selected and will be brought on
                                                                                managers and staff together from around
                                                                                                                                 board in 2019.
                                                                                the world to share their knowledge,
                                                                                experience and best practices.

                                                                                                                                                                                                                                                        MICROSCOPY AUSTRALIA | 2018 | 2 – 3
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
STATS
                                                                 233
                                                                 INSTRUMENTS
                                                                                         RESEARCH
                                                                                        COMMUNITY
                                                                                                                   BIG NEWS
                                                                 3,900

2018
                                                                 USERS              50% PHYSICAL & MATERIALS       This year’s                         • Our team made major
                                                                                                                                                         contributions to the
                                                                                    34% BIOMEDICAL                 standout                              Australian microscopy

                                                                 120+
                                                                                                                                                         community at IMC19 –
                                                                                    16% GEOSCIENCE & ENVIRONMENT   achievements                          the world’s largest
                                                                                                                   include:                              microscopy conference.
                                                                 INDUSTRY CLIENTS                                  • Launch of our rebrand with
                                                                                                                                                       • Hosted and helped organise
                                                                                                                                                         three Global BioImaging
                                                                                                                     a focus on research outcomes        workshops in Sydney.
                                                                 268,000                                             and the idea “There is so
                                                                                                                     much more to see”.                • Amazing new experts have
                                                                                                                                                         joined the team.
                                                                 HRS BEAMTIME

       Image: Neurons from Stem Cells - Confocal | Jianyun Gao
                                                                                                                   • Five years of certainty
                                                                                        SUPPORTING                   around operational funding        • Launched new modules
                                                                                          DIVERSE                    + $15M on top of business           and content on MyScope,
                                                                                                                     as usual funding.                   our online learning resource:
                                                                 160,000                INDUSTRIES
                                                                                                                   • Launched some of Australia’s
                                                                                                                                                         www.myscope.training.

                                                                 MYSCOPE USERS
                                                                                                                     highest resolution microscopes.   • Selection of Monash University
                                                                                                                                                         as our new Victorian facility.
                                                                                                                   • Stories and Structures –
                                                                                                                     New Connections exhibition,       • Continued to enable great

                                                                 1,400+
                                                                                                                     juxtaposing micrographs with        research – check out this
                                                                                    41% MANUFACTURING                Indigenous art was launched         year’s inspiring highlights
                                                                                    22% BIOMEDICAL                   and is now touring Australia.       pg 22 – 43.

                                                                 PUBLICATIONS       37% RESOURCES & ENVIRONMENT

                                                                                                                                                                   MICROSCOPY AUSTRALIA | 2018 | 4 – 5
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
SPECIALISTS
                                                                        NETWORK
                                                                                                                                                                               JAMES
                                                                                                                                                                                COOK
                                                                                                                                                                             UNIVERSITY

                            TEAM
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                            Microscopy Australia. A team of skilled                                                                                ICRO

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                            specialists are keen to share their
                            knowledge, offering personalised support                               UQ                                                                        UNSW
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                            team photographed at various events.                                                                                                                    COPE U
                                                                                                                                                                                                      QUEENSLAND
                            Thanks to all of you.                         CURTIN
                                                                        UNIVERSITY                                            FACILITIES                                                             UNIVERSITY OF
                                                                                                                                                                                                      TECHNOLOGY
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RESEARCHERS                                                                                    CSIRO                             EG
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                                                                                            AUSTRALIAN                                       A L FA CI
                                                                                              ANIMAL                                                                            RMIT
                                                                                              HEALTH                                                                         UNIVERSITY
                                                                                            LABORATORY

                                                             TRAINERS

                                                                                                                                                                                                                     MICROSCOPY AUSTRALIA | 2018 | 6 – 7
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
EQUIPMENT
AND
EXPERTISE                                                              SPECIMEN
                                                                       PREPARATION
                                                                       Biological & Materials
                                                                       Cell Culturing &
                                                                                                     LIGHT & LASER
                                                                                                     TECHNIQUES
                                                                                                     Fluorescence, Confocal
                                                                                                     & Multiphoton Microscopy
                                                                                                                                     SCANNING ELECTRON
                                                                                                                                     MICROSCOPY
                                                                                                                                     Imaging & Analytical
                                                                                                                                     Spectroscopy
                                                                                                                                                                        TRANSMISSION
                                                                                                                                                                        ELECTRON MICROSCOPY
                                                                                                                                                                        Imaging & Analytical
                                                                                                                                                                        Spectroscopy
Microscopy Australia empowers research by providing                    Molecular Preparation         Super Resolution Microscopy     In-situ Imaging & Testing          Cryo-techniques
                                                                       Thermomechanical Processing   Analytical Spectroscopy         Cathodoluminescence                & Tomography
open access to sophisticated instruments and expertise for
                                                                       Ion Milling & Machining       Flow Cytometry                  Electron Backscatter Diffraction   Phase & Z-contrast Imaging
researchers around the country. Our dedicated staff ensure
                                                                       Ion Implantation              Laser Microdissection                                              Electron Diffraction
that researchers collect high quality data. Our range of
specialised techniques is summarised here.

Our online microscopy training tools are also openly accessible with
over 160,000 users worldwide in the last year alone.

With the nation’s largest range of high-end microscopes and
specialists, we also support business across a wide range of
industry sectors. Companies of all sizes, from start-ups to multi-
nationals, benefit from our services, training and R&D partnerships.

                                                                       ION & SPECTROSCOPY            SCANNED PROBE                   X-RAY                              VISUALISATION
                                                                       PLATFORMS                     TECHNIQUES                      TECHNOLOGIES                       & SIMULATION
                                                                       Secondary Ion                 Atomic Force Microscopy         X-ray Diffraction                  Computed Spectroscopy
                                                                       Mass Spectroscopy             Scanning Tunneling Microscopy   X-ray Fluorescence                 Computed Diffraction
                                                                       Imaging Mass Spectroscopy     Near-field Scanning             X-ray Micro &                      Image Simulation & Analysis
                                                                       Atom Probe                    Optical Microscopy              Nanotomography                     Data Mining
                                                                       LA-ICP-MS

Image: Colour-enhanced TEM of a crocodile salt gland

                                                                                                                                                                                           MICROSCOPY AUSTRALIA | 2018 | 8 – 9
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
SYDNEY – ATOMIC-SCALE                                   A snapshot of the
              STUDY OF QUASICRYSTALS                                  technique development
              Quasicrystals have an ordered structure,
              as do ‘conventional’ crystals. However, the
                                                                      work by our expert staff
              pattern of atoms doesn’t keep repeating                 – providing Australian
              itself in the same way as it would in a normal
              crystal. Quasicrystals were discovered by               researchers with
              Dan Shechtmen in 1982 and were considered
              very contentious at the time, causing ridicule          constantly improving
              of him as a scientist. But his expertise in
              transmission electron microscopy (TEM), and
                                                                      tools. All these advances
              his persistence and tenacity, meant that he             were presented at IMC19.
              was able to prove the existence
              of quasicrystals.                                                                               ANU                                              ANU                                           SYDNEY

TECHNIQUE
              In 1991 the International Union of                                                              Optimising automated systems for correlative     Testing traditional assumptions to            Working out atom probe parameters to
              Crystallography rewrote the definition                                                          light and electron microscopy for studies into   find the most practical and efficient         enable analysis of complex biomineralised
              of ‘crystal’ to:                                                                                diabetes, malaria and cancer.                    approach to elemental analysis.               samples like bone and shell.
              “any solid having an essentially discrete diffraction
              diagram”. Quasicrystals are now a popular field of
              study in materials science and engineering.

DEVELOPMENT
              Quasicrystals can exist alongside ‘conventional’
              crystals in various different materials but to
              date there has been no coherent approach to
              the analysis of both structural types in a single
              sample. The analytical expertise of Drs Anna
              Ceguerra, Hongwei Liu and Magnus Garbrecht
              at Microscopy Australia’s University of Sydney
              facility, has focused on developing a calculation
              method that simplifies analysis of the relationships
              between quasi- and conventional crystals. This
              enables exploration of the relative orientations of
              the crystals and can shed light on the behaviour
              and properties of these materials.
              The team’s ‘crystallographic calculator’ allows         UQ                                      UQ                                               FLINDERS                                      CURTIN
              the structures and orientation of all the crystals
                                                                      Repurposing electron beam lithography   Discovering how microwave radiation              Developing an internet-based initiative for   Relating particle morphology to
              in a sample to be understood from both TEM
                                                                      instruments to enable precision         improves sample preparation procedures.          atomic force microscopy (AFM) calibration     automated X-ray diffraction (XRD)
              and atom probe data. This improves the current
                                                                      scanning electron microscopy (SEM)                                                       across three countries; enabling direct       specimen preparation parameters for
              analysis methods and supports research into new
                                                                      imaging of large areas.                                                                  comparison of AFM data from researchers       optimal results.
              and complex areas of materials science using our
                                                                                                                                                               around the world.
              advanced microscopes.

                                                                                                                                                                                                                              M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 10 – 11
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
AUSTRALIAN
                                                                                                  The Graphene Manufacturing Group (GMG)
                                                                                                  is an award-winning Brisbane-based global
                                                                                                                                                        The analysis done for us at Microscopy
                                                                                                                                                        Australia’s University of Sydney facility has
                                                                                                                                                                                                           This enables us to adjust operating windows
                                                                                                                                                                                                           during our manufacturing process and directly
                                                                                                                                                                                                                                                              CLIENT BASE
                                                                                                  technology business empowering innovation             been instrumental in both the process and          link the characteristics of our graphene with      & PRODUCT
                                                                                                  across industries through the bulk supply of          product design of our graphene. It allows          tangible customer outcomes.
                                                                                                                                                                                                                                                              APPLICATIONS

NANOTECH ––
                                                                                                  graphene. GMG began operations in August              us to streamline improvements before and
                                                                                                  2016 from their pilot plant, realising their vision
                                                                                                  to unlock the incredible variety of applications
                                                                                                                                                        during production as well as confirming post-
                                                                                                                                                        production efficacy.
                                                                                                                                                                                                           This independent analysis is also essential
                                                                                                                                                                                                           for us in building successful relationships with   INCLUDE:
                                                                                                  for graphene, that until now, have been                                                                  our current and future customers and with
                                                                                                                                                        Via scanning and transmission electron             our investors.
                                                                                                                                                                                                                                                              CONCRETE

BUILDING
                                                                                                  restricted to research labs.
                                                                                                                                                        microscopy, Microscopy Australia has enabled
                                                                                                  The team at GMG have engineered a unique              us to understand our graphene by providing:        We now have confidence to better understand
                                                                                                                                                                                                           the improvement mechanisms required
                                                                                                  and flexible continuous process that delivers
                                                                                                  high quality graphene at a fraction of the cost       –   sizes and morphology of the carbon             for multiple applications of the wonderous         EPOXY RESIN

BUSINESS
                                                                                                  of existing production methods. The process               structures we were producing                   product we produce.” Craig Nicol, Founder,
                                                                                                                                                                                                           Managing Director and CEO.
                                                                                                  can be tailored to precisely align with GMG’s
                                                                                                  clients’ needs for their different applications.
                                                                                                                                                        –   quantifying our graphene layers (along with                                                       MEDICAL DEVICES
                                                                                                                                                            Raman analysis from Sydney Analytical)         GMG’s success sees them constructing of one
                                                                                                  “Our innovative production process is world-                                                             of the largest graphene plants in the world in
                                                                                                  leading, so it is essential to understand exactly
                                                                                                                                                        –   confirmation of the crystalline structure of   early 2019.                                        BITUMEN
                                                                                                                                                            our graphene.
                                                                                                  what we are manufacturing.

Graphene is a single sheet form of carbon                                                                                                                                                                                                                     POLYMERS
that is only one atomic layer thick. It is the
strongest material ever tested and efficiently
                                                 Competitor’s (above) vs GMG’s Graphene (below)
                                                                                                                                                                                                                                                              BATTERIES
conducts heat and electricity.                                                                                                                                                                                                                                FOR ELECTRIC
                                                                                                                                                                                                                                                              VEHICLES
                                                                                                                                                                                                                                                              DEFENCE
                                                                                                                                                                                                                                                              MATERIALS
                                                                                                                                                                                                                                                              COATINGS
                                                                                                                                                                                                                                                              SOLAR CELLS
                                                                                                                                                                                                                                                              METALS
                                                                                                      100nm                                                               100nm

                                                                                                  TEM images of two GMG graphene samples

                                                                                                                                                                                                                                                                 M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 12 – 13
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
SUPPORTING
MEDTECH      LAUNCHED 2018
             MICROSCOPY AUSTRALIA                                                                                                                  AN INTERVIEW
& PHARMA     TECHNICAL VOUCHER FUND                                                                                                                WITH LG PHARMA
             The Microscopy Australia Technical Voucher Fund has been established                                                                  Little Green Pharma (LGP) is a privately              “Engaging with Microscopy Australia,
             with the support of MTPConnect, the Industry Growth Centre for medtech                                                                held pharmaceutical start-up founded in               through their facility at UNSW, we have been
             and pharma. The scheme aims to provide easy, discounted access to                                                                     2016 in Perth, WA. After securing the                 able to validate the physical makeup of some
             our sophisticated instruments and expert technical help for this important                                                            necessary permits and establishing                    of our novel investigational formulas. This work,
             industry. It is designed to reduce barriers and provide industry with access to                                                       manufacturing partnerships in 2017, LGP               supported by a Microscopy Australia Technical
             analytical tools and experts with problem-solving capabilities. Solutions can                                                         became the first company to produce and               Voucher, was very timely, as we were able to
             be tailored to the specific research needs of both SME and large companies.                                                           bring 100% Australian-made pharmaceutical-            use world-class resources, including the new
                                                                                                                                                   grade medicinal cannabis formula to the               Talos Arctica cryo-EM instrument to image
             Our wide-ranging techniques can help medtech industries understand the                                                                Australian market.                                    our samples.”
             structure, function and properties of molecules, cells and materials whether
                                                                                                                                                   “While ensuring supply of our currently available     Lilly Bojarski,
             they are structural proteins, antibodies, drugs, drug delivery systems,
                                                                                                                                                   formula (to prescribing physicians for patients       Medical Science Liaison (NSW)
             biomaterials, alloys, ceramics, nanoparticles or polymers.
                                                                                                                                                   who meet the criteria set out by their state health   “We have subsequently been granted another
                                                                                                                                                   authority regulations and via the TGA’s Special       voucher to continue our research. This will
             ammrf.org.au/industry-services                                                                                                        Access Scheme B) we are also committed to             enable LGP to monitor our formulas for any
                                                                                                                                                   developing new pharmaceutical-grade medicinal         degradation during various storage conditions.”
             (Microscopy Australia website in progress)
                                                                                                                                                   cannabis formulations of quality and efficacy for
                                                                                                                                                                                                         Damian Wood,
                                                                                                                                                   Australians with unmet clinical needs.”
                                                                                                                                                                                                         Head of Pharmaceuticals
                                                                                                                                                   Fleta Solomon, CEO
                                                                                                                                                                                                         “LGP is continuing to engage with academic
                                                                                                                                                   “We are currently producing our LGP Classic           research partners to develop novel approaches
                                                                                                                                                   10:10 oil oral liquid formulation, where each mL      to delivering cannabinoid-containing formulas
                                                                                                                                                   contains 10mg THC and 10mg CBD derived                as efficiently as possible for maximum
                                                                                                                                                   from medicinal cannabis whole plant extract.          clinical effect. We intend to maintain our
                                                                                                                                                   THC and CBD in a 1:1 ratio is a common                association with Microscopy Australia as we are
                                                                                                                                                   starting point for practitioners. We are also         committed to continuing R&D in the medicinal
                                                                                                                                                   continuing to expand and improve our range of         cannabis space.”
                                                                                                  100nm                                            available formulas by engaging with academic
                                                                                                                                                   and other partners to conduct pre-clinical            Lilly Bojarski,
                                                                                                                                                   and clinical development R&D work with new            Medical Science Liaison, (NSW)
                                                                                                                                                   medicinal cannabis formulations, including many
                                                                                               Cryo EM image of cannabinoid-containing liposomes   for which we have secured IP protection.”
                                                                                                                                                   Damian Wood,
                                                                                                                                                   Head of Pharmaceuticals

                                                                                                                                                                                                                           M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 14 – 15
MICROSCOPY AUSTRALIA RESEARCH HIGHLIGHTS 2018
60,000 YEARS OF TRADITION
MEET THE MICROSCOPIC WORLD
We recently created a touring exhibition of
micrographs and associated Aboriginal and Torres
Strait Islander artworks. Funded by external
sponsorship and curated by Microscopy Australia,
it aims to engage all Australians with science and
Indigenous cultures in new ways.

This exhibition explores images that pass on
knowledge and shape our understanding of the world.
Rich visual parallels between the representations seen
in many Indigenous artworks and the microscopic
structures hidden in the natural world, reveal
unexpected and intriguing similarities. This delivers
a new vision of our country and its stories. We hope
that these images will open conversations and provide
opportunities to make new and lasting connections
across disciplines and across cultures.                  Visit the website to view the full exhibition,
                                                         tour dates and hosting information.
Images: Sperm Growing in a Moth Testis | Greg Rouse      Download the exhibition book at:
Witchetty Grub Dreaming | Jennifer Napaljarri Lewis      micro.org.au/storiesandstructures

                                                                                                          M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 16 – 17
IMC19
                                                                                                                   STEM OUTREACH AREA                                                                                INDIGENOUS CULTURE                                                RESPONSE

                                                                                                                                                                                                                                                                           “Innovations in microscopy enable us to
                                                                                                                                                                                                                                                                         extend our understanding of ourselves and
                                                                                                                                                                                                                                                                        the world around us. IMC19 brought together
                                                                                                                                                                                                                                                                          leaders in both the development and the
                                                                                                                                                                                                                                                                              application of microscopy in a huge
The Australian Microscopy & Microanalysis                                                                                                                                                                                                                                             range of disciplines”
Society (AMMS) hosted the 19th International                                                                                                                                                                                                                                         Prof. Simon Ringer
Microscopy Congress (IMC19) in September                                                                                                                                                                                                                                              Congress Chair
at the International Convention Centre,
Sydney. Microscopy Australia staff were                                                                                                                                                                                                                                      “An investment in this field (microscopy)
heavily involved in getting the Congress to                                                                                                                                                                                                                               is an investment in nanoparticles that target
                                                                                                                                                                                                                                                                           such things as a drug directly to malignant
Australia, organising the meeting and its                                                                                                                                                                                                                                   cells; 3D printed lattices that act like tiny
diverse scientic program.                                                                                                                                                                                                                                               factories for T-cells; vital in the new generation
                                                                                                                                                                                                                                                                              of cancer immunotherapies and more.
                                                                                                                                                                                                                                                                            Without Microscopy, there is no modern
                                                                                                                                                                                                                                                                                     science – end of story.”
                                                                                                                                                                                                                                                                                       Dr Alan Finkel
                                                                                                                   The Learning Space was a free, four-day                                                           Microscopy Australia enriched the                            Australia’s Chief Scientist
2,100+ DELEGATES FROM 48 COUNTRIES                                                                                 school science program at the Congress,                  4 DAYS                                   IMC19 visitor experience with Australian                      IMC19 opening address
                                                                                                                   initiated by the corporate members of AMMS                                                        Indigenous culture, live art and music.
2,000+ PRESENTATIONS                                                                                               and supported by a bevvy of volunteers                   25+ VOLUNTEERS                           The Stories and Structures – New Connections             “This was a great STEM initiative by
                                                                                                                   from microscopy vendors, universities, the
150 INVITED TALKS                                                                                                  Australian Science Teachers Association                  19 SCHOOLS
                                                                                                                                                                                                                     exhibition brings 60,000 years of visual             IMC19 and an amazing experience for the
                                                                                                                                                                                                                     tradition and storytelling into dialogue with        students who came. We don’t have these
                                                                                                                   and museums around Darling Harbour. As
450 ORAL PRESENTATIONS                                                                                             a corporate member of AMMS, Microscopy                   570 STUDENTS
                                                                                                                                                                                                                     scientific imaging and was on show at the              microscopes at our school and without
                                                                                                                                                                                                                     Congress. One of the exhibition artists, Kurun         the IMC19 Outreach Program, most of
                                                                                                                   Australia contributed both volunteers and
800 POSTERS                                                                                                        organisers to the Learning Space.                        4 SEM’S
                                                                                                                                                                                                                     Warun, attended the IMC trade show at the             our students wouldn’t be able to use this
                                                                                                                                                                                                                     invitation of Microscopy Australia. He used this       equipment. Our students are engaged;
2 NOBEL LAUREATES                                                                                                  570 students from 19 schools were enthralled
                                                                                                                                                                            20 LIGHT MICROSCOPES
                                                                                                                                                                                                                     unique international platform to share his art         they are learning directly from experts.”
                                               MICROSCOPY AUSTRALIA –                                              by hands-on experience with microscopes, a 3D                                                     and culture live onsite.
70 COMPANIES IN TRADE EXHIBITION               RECHARGE LOUNGE                                                     virtual reality visualisation of the inside of a cell,
                                                                                                                                                                            VR                                       For more on Stories and Structures –
                                                                                                                                                                                                                                                                                   Mrs Diane Fairweather
                                                                                                                   and 3D printer demonstrations.                                                                                                                                     Head of Science,
                                                                                                                                                                                                                     New Connections visit the website:
INTRODUCED DIGITAL POSTERS                     The new Microscopy Australia identity was launched                  Congratulations to the outreach team jointly             3D PRINTING
                                                                                                                                                                                                                                                                                   Riverstone High School
                                               at IMC19. Our Recharge Lounge was very popular with                                                                                                                   micro.org.au/storiesandstructures
                                                                                                                   coordinated by Benjamin Pace and Eleanor
                                               delegates and recognition of the new name grew quickly              Kable with a bunch of amazing volunteers keen
                                               as our branded bags and notebooks flew off the shelves.                                                                      Equipment and demonstrations were
                                                                                                                   to share their knowledge. It was great to see            supported by Microscopy Australia,
                                                                                                                   so many people come together to make this                ZEISS, Leica, AXT, Keepad Interactive,
                                               With 125 of our staff gathered from around the nation,
                                               collaborations and knowledge exchange blossomed. Most
                                                                                                                   happen at the IMC19 event, inspiring future              NewSpec, ATA, Coherent, Me3D and                                       CONGRATULATIONS TO EVERYONE INVOLVED
                                                                                                                   microscopists.
                                               gave talks or poster presentations to the international assembly.                                                            UNSW Art and Design, VR: Prof. John                                    IN MAKING IMC19 A GREAT SUCCESS.
                                                                                                                                                                            McGhee.
                                               Many also volunteered to share the wonders of microscopy            The students were excited to continue exploring                                                                                 THE EVENT RECENTLY WON THE INTERNATIONAL
                                               with school groups from around New South Wales.                     microcopy at myscopeoutreach.org
                                                                                                                                                                                                                                                   IAPCO COLLABORATION AWARD.

                                                                                                                                                                                                                                                                                       M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 18 – 19
GLOBAL BIOIMAGING ––                                                                                                                                  FUTURE
                                        EXCHANGE                                                                                                                                              DIRECTIONS
                                        OF EXPERIENCE                        In September 2018 Microscopy Australia,
                                                                             working with the National Imaging Facility,
                                                                             were proud to host three Global BioImaging
                                                                             (GBI) events. An Exchange of Experience
                                                                                                                                                                                              INSTRUMENTS & EXPERTISE
                                                                                                                                                                                              Australian researchers need access to emerging
                                                                                                                                                                                                                                                  TOOL DEVELOPMENT
                                                                                                                                                                                                                                                  We will give Australian science the edge by
                                                                                                                                                                                              microscopy and microanalysis technologies to        developing new instruments and analytical
                                                                             brought together 64 bioimaging facility                                                                          take their research successfully into the future.   techniques. Dedicated staff will be employed
                                                                             managers from 18 countries. They tackled                                                                         We will provide access to new technologies          specifically to develop innovative and useful new
                                                                             big questions about creating a sustainable                                                                       in three key areas: atomic-scale microscopy,        solutions: hardware, software and methods to
                                                                             future for international collaboration and the                                                                   cryo-electron microscopy and high sensitivity       take our capabilities into the future.
                                                                             development of frameworks to ensure quality                                                                      microanalytical tools. These new tools will be
                                                                             of research, service standards and data                                                                          supported by experts to help researchers in both
                                                                             management. Microscopy Australia shared our                                                                      materials and biological sciences produce world
                                                                             experience as a national open access research                                                                    leading research.                                   INDUSTRY ENGAGEMENT
                                                                             infrastructure and the value it brings, not just
                                                                             to researchers, but Australia as a whole.                                                                                                                            We will continue to work with industry,
                                                                                                                                                                                                                                                  particularly with SMEs, through programs
                                                                             The next event, the second International Training                                                                DATA SOLUTIONS                                      such the Industry Growth Centres and our
                                                                             Course on the Management and Operation of                                                                                                                            MTPConnect-funded Technical Voucher scheme.
                                                                             Imaging Core Facilities, provided the opportunity                                                                Researchers are producing ever-larger and           This brings subsidised access to microscopy to
                                                                             for visitors to learn from an international panel of                                                             multi-dimensional data sets and are increasingly    industries both large and small.
                                                                             experts about the nitty gritty of running a world                                                                using multiple instruments as part of a single
                                                                             class facility. This included topics from delivering                                                             study. They need harmonised data analysis,
                                                                             durable, reliable and high-quality image data, to                                                                transfer and storage solutions to turn the data
                                                                             managing difficult clients.                                                                                      into new discoveries. We are finding synergies      TRAINING & COMMUNITY
                                                                                                                                                                                              with other organisations who have similar data
                                                                             This was followed by the second International                                                                    requirements and are working with them to           We will continue to expand our world-leading
                                                                             Training Course on Challenges in Image Data            We would like to thank the commonwealth                   implement systems to meet these challenges.         MyScope training platform to add modules
                                                                             Management and Analysis. This is an area that          government for their continued support                    Microscopy Australia will fund a network of         covering techniques with high demand or high
                                                                             benefits enormously from knowledge sharing                                                                                                                           knowledge requirements. The Stories and
                                                                                                                                    (through the NCRIS scheme) for our core                   dedicated staff around Australia to deploy these
                                                                             as microscopists around the world seek the                                                                       systems and to interface between researchers,       Structures – New Connections exhibition
                                                                             best solutions to getting the most from the large      activities, all our staff for their excellent
                                                                                                                                                                                              instrument scientists and the data and analytics    (see pg 16) will tour Australia to make new
                                                                             datasets that microscopy now generates.                work and sponsors for their commitment                                                                        and lasting connections, encouraging interest
                                                                                                                                                                                              solutions.
                                                                                                                                    to our training and community programs.                                                                       in STEM, particularly amongst Australia’s
                                                                             Feedback from both events was overwhelmingly
                                                                             positive, further projecting Microscopy Australia                                                                                                                    Indigenous youth.
EoE III deligates at the Charles Perkins Centre – The University of Sydney                                                          Image: Scanning electron micrograph of
                                                                             into the global consciousness as a world leader in
                                                                             advanced imaging.                                      the organic fibre network in a chicken egg shell.

                                                                                                                                                                                        1μm
                                                                                                                                                                                                                                                                    M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 20 – 21
RESEARCH
                                                                                                                                                                  OUTCOMES
                                            1                                    2                       3                              4
                                           PILBARA ROCKS POINT                  GENETIC ENGINEERING     MAGNESIUM                      A SOLAR FUTURE
                                           TO PAST LIFE ON MARS                 FOR FOOD SECURITY       PLASTICITY GAINS

                                                                                                                                                                  & SOCIAL
                                            5                           6                                7                                       8
                                                                                                                                                                  IMPACT
MyScope                                    FISH SMELL                  BECOMING A FLOWER                INSIGHTS INTO
                                                                                                        PARKINSON’S DISEASE
                                                                                                                                                FROM AUTOMOTIVE
                                                                                                                                                WASTE TO ROBUST
                                                                                                                                                                  Take a closer look at this year’s research
                                                                                                                                                                  highlights – all enabled by Microscopy Australia.
                                                                                                                                                COATED STEEL
Explore our online platforms to train                                                                                                                             With over 3,900 researchers annually,
in advanced microscopy:                                                                                                                                           here are just a few of our recent stories.
myscope.training

                                                                                                                                                                                                                                                       RESEARCH OUTCOMES
Introduce your family to microscopy
with our engaging simmulator activities:
myscopeoutreach.org
                                            9                     10            11                      12                    13                14

                                                                                                                                                                  2018
Image: Colour enhanced scanning electron   VIRTUAL LEAF       CONCENTRATING     SUPPORTING INDUSTRY –   BACTERIA              GOLDEN EFFECTS    RARE MINERAL
micrograph of a moth egg
                                                              SUNLIGHT IN       AURUBIS                 LIKE IT ROUGH         ON CELLS          REVEALS HUGE
                                                              SOLAR CELLS                                                                       IMPACT CRATER

                                                                                                                                                                                                    M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 22 – 23
RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

                                                                                                                                                                                                                                                                                                    1mm

                                                          1
                                                                                  CHALLENGE                                        RESEARCH                                                                                                     IMPACT

                                                          PILBARA ROCKS
                                                                                  The serious search for life elsewhere in the     Rocks in the Pilbara region of north Western          The answer unfolded when Tara Djokic, working         The finding of 3.5 billion-year-old-life
                                                                                  Universe is a rather infant endeavour for        Australia preserve the oldest known fossilised life   with Prof. Van Kranendonk and Prof. Malcolm           inhabiting land-based hot springs on Earth
                                                                                  humanity. How do we formulate a search           on the planet. Some of these are stromatolites        Walter at UNSW, discovered the presence               suggests a good place to start looking for
                                                                                  strategy and what questions do we ask?           – rock structures built by communities of             of geyserite directly interlayered with the

                                                          POINT TO PAST
                                                                                                                                                                                                                                               signs of life on Mars would be around ancient
                                                                                  Since life on Earth was microbial for its        micro-organisms. In the late 1970s geologists         stromatolites. Geyserite is a rock type that only     hot spring rocks. In fact, many of the rocks
                                                                                  first three billion years, we can begin with a   were excited to discover the oldest known             forms at the edges of hot spring pools such as        on Mars are the same age as the Dresser
                                                                                  deeper understanding of the history of life on   stromatolites on Earth in a group of rocks called     those seen today in Yellowstone National Park.        formation and evidence of ancient hot
                                                                                  this planet.                                     the Dresser Formation, located in the east

                                                          LIFE ON MARS
                                                                                                                                                                                         Electron microscopy in the Microscopy Australia       springs has already been identified on the
                                                                                                                                   Pilbara. Geologists continued investigating to                                                              red planet.
                                                                                  ‘Extremophile’ microbes living on Earth today                                                          facility at UNSW Sydney showed that very fine
                                                                                                                                   interpret the ancient environment that supported
                                                                                  thrive in extreme conditions – hyper-hot,                                                              light and dark layers in the rock sample were         Ref: Djokic et al., 2017,
                                                                                                                                   these microbes.
                                                                                  cold, salty, acidic – conditions too harsh                                                             composed of titanium dioxide and clays. These         Nature Communications, 8, 15263
                                                                                  to support more complex plant and animal         Initial research suggested a quiet shallow-           minerals aided in identifying the geyserite as they
                                                                                  life. Although we see no sign of complex life    water marine setting such as the modern-day           are known to precipitate from modern hot spring
Images: Pilbara region of north Western Australia                                 elsewhere in our solar system, we know of        Shark Bay, WA. Later work by Prof. Martin             pools. The proximity of geyserite and fossil life
                                                                                  active and ancient environments that could       Van Kranendonk’s research group at UNSW               allowed the researchers to conclude that life was

                                                          Signs of life –
Mars, NASA
                                                                                  support extremophiles. Mars is one example,      Sydney suggested it was actually a dynamic            flourishing in and around the edges of hot spring
Geyser in an Icelandic hot spring field                                           as well as the moons of Jupiter and Saturn;      volcanic setting with large volumes of circulating    pools, approximately 3.5 billion years ago. The
                                                                                  Europa and Enceladus.                            volcanically heated water. This model raised          discovery of geyserite in the Dresser formation

                                                          3.5 billion years ago
Section of geyserite showing the dark and light banding
                                                                                                                                   interesting questions. Were the ancient microbes      also showed that land-based hot springs were
                                                                                                                                   surviving in volcanically heated water, or were       present on Earth around 3 billion years earlier
                                                                                                                                   they simply growing in the quiet areas of the         than previously known.
                                                                                                                                   system, unrelated to hydrothermal activity?

                                                                                                                                                                                                                                                                M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 24 – 25
RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

                                                                                                                                                                                            3      MAGNESIUM
                                                                                                                                                                                                   PLASTICITY GAINS

                                                                                                                                                                                          Materials science aims to improve economically valuable
                                                                                                                                                                                          metal alloy properties such as lightness, strength and
                                                                                                                                                                                          plasticity. Plasticity is the property of material to be shaped
                                                                                                                                                                                          without breaking. As the lightest metals available for

  2      GENETIC ENGINEERING                                                                                                                                                              structural engineering, magnesium alloys are the focus of
                                                                                                                                                                                          much research, and new processing methods continue to
         FOR FOOD SECURITY                                                                                                                                                                be developed. Improving the plasticity of these alloys is a
                                                                                                                                                                                          challenge due to the crystal structure of magnesium.
Future food security is vital in the face of          Mathematical modelling shows that crop yield
growing populations and environmental                 could be increased by up to 60% if the C3 plant                                                                                     Dr Suqin Zhu has worked extensively on these alloys and
uncertainty. Genetic engineering could hold           RuBisCO could be replaced with Cyanobacteria                                                                                        developed a process called high strain-rate rolling (HSRR) that
the key to increased crop yields.                     RuBisCO and the rest of the CO2 concentrating                                                                                       is strikingly effective at producing high quality magnesium alloy
                                                      components in functional carboxysomes.                                                                                              sheets that are strong and easy to work. Dr Zhu is now working
There are three major groups of plants with                                                                                                                                               with Prof. Simon Ringer at the University of Sydney and uses
respect to how they collect and use carbon            Drs Ben Long, Wei Yih Hee and Prof. Dean Price                                                                                      Microscopy Australia instruments to understand, at a microscopic
dioxide (CO2). C3 plants use CO2 directly from        from the Australian National University (ANU),                                                                                      scale, how HSRR increases strength and plasticity.
the air whereas C4 and crassulacean acid              have used tobacco as a model plant. Using just
metabolism (CAM) plants first convert it to an        four of the necessary genes from cyanobacteria,                                                                                     Transmission Kikuchi diffraction and atomic-scale transmission
acid called malate. Malate allows CO2 to be           they have successfully engineered tobacco                                                                                           electron microscopy (TEM) revealed that HSRR alloys have a very
stored and concentrated around RuBisCO, the           chloroplasts to make basic carboxysomes.                                                                                            high density of a particular kind of distortion, known as a stacking
enzyme that starts CO2’s conversion into sugars.      Transmission electron microscopy in the                                                                                             fault. These distortions are created in the alloy’s crystal lattice
C3 plants are most efficient in fertile, moist and    Microscopy Australia facilities at ANU showed                                                                                       early in the HSRR process. These don’t allow the lattice planes
temperate conditions while C4 plants are more         these carboxysomes to be full of RuBisCO                                                                                            to slide past each other. However, as the process continues at
efficient in hot and arid conditions.                 and around 100 nanometres in diameter, the                                                                                          higher strain, these stacking faults transform into a different kind
                                                      same size as those that naturally occur in                                                                                          of distortion, known as perfect dislocation, that slides easily.
RuBisCO works very slowly and in C3 crops it
                                                      cyanobacteria.
is a major limiting factor for their photosynthetic                                                                                                                                       Through this series of structural reactions, HSRR makes two
performance and yield.                                This success provides a critical step toward the                                                                                    significant changes to the structure of the alloy. Firstly, perfect
                                                      construction of fully functional carboxysomes in                                                                                    dislocations greatly increase plasticity because they allow the
Cyanobacteria use a different version of                                                                                                                                                  crystal lattice planes to slide. Secondly, HSRR makes smaller
                                                      plants incorporating a complete cyanobacterial
RuBisCO. This enzyme, along with other                                                                                                                                                    crystals, which make the modified alloy stronger and tougher
                                                      suite of CO2 concentrating components. This
components that concentrate CO2 around                                                                                                                                                    than it was before the HSRR.
                                                      promises stronger crop yields, while improving
it, is held in micro-compartments called
                                                      use of both nitrogen fertiliser and water across a
carboxysomes, enabling it to work much faster                                                                                                                                             Microscopy is essential to the atomic-scale engineering of alloys.
                                                      wide range of environmental conditions.
than plant RuBisCO.                                                                                                                                                                       If the HSRR process can be scaled to industrial production and
                                                      Ref. B. Long et al. 2018 Nature Communications,                                                                                     commercialised, these innovative magnesium alloys will have
                                                      9:3570 | DOI: 10.1038/s41467-018-06044-0                                                                              100nm         great economic potential. They will have applications in vehicles,
                                                                                                                                                                                          from trains and planes to cars and bikes, and in electronic and
                                                                                                                                                                                          biomedical devices.
                                                                                                           TEM image of plant carboxysomes encapsulating RuBisCO enzymes.                 Ref: S.Q. Zhu & S.P. Ringer, 2018, Acta Materialia, 144, 365
                                                                                                                                                                                          Image: TEM image showing stacking
                                                                                                                                                                                          faults and dislocations in a Mg alloy.

                                                                                                                                                                                    1nm

                                                                                                                                                                                                                                   M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 26 – 27
RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

                                               4

                                           A SOLAR FUTURE
200,000TW OF                               CHALLENGE
                                           In a world in need of cheaper, sustainable
                                                                                           RESEARCH
                                                                                           Phosphorene is a 2D form of phosphorus only           –
                                                                                                                                                     IMPACT
                                                                                                                                                      This new microwave method for producing

SOLAR ENERGY
                                           and clean energy solutions, solar is            a few atoms thick. Researchers at Flinders                 phosphorene will contribute significantly to
                                           an obvious option. However, the cost            University considered that its properties could            the field of phosphorene research.
                                           and efficiency issues of different solar        increase the efficiency of a variety of different
                                           cell technologies continue to challenge         solar cell types. Their approach was to include       –    Efficiency gains in a range of cheap, easy-

FALLS ON EARTH
                                           researchers.                                    a layer of ultra-thin phosphorene nanoflakes into          to-make and efficient solar cells without the
                                                                                           these next-generation solar cells.                         need for platinum.
                                           The solar cells on our roofs today use
                                                                                                                                                 –    Greater uptake of solar energy as a viable

EACH YEAR
                                           crystalline silicon. These are reasonably       The research team led by Prof. Joe Shapter
                                           efficient but remain expensive and require      and Dr Munkhbayar Batmunkh developed a                     and sustainable option for power generation.
                                           a lot of energy to manufacture. Physical        quick and simple way to make thin flakes of           “With these promising early results, further
                                           inflexibility also limits their applications.   phosphorene with microwaves.                          studies with the microwave technique and
                                           Several cheaper, more adaptable and                                                                   other solvents will help improve stability and
                                                                                           Black phosphorus is immersed in the common

TOTAL GLOBAL
                                           easier-to-manufacture alternatives are being                                                          durability of phosphorene and allow us to
                                                                                           organic solvent, N-Methyl-2-pyrrolidone (NMP),                                                                   1nm
                                           seriously investigated.                                                                               look at ways to produce larger amounts for
                                                                                           and exposed to microwaves for just 10 minutes.
                                           Two of these alternative cells are:             This contrasts to previous methods involving 15       possible commercial applications”

ENERGY DEMAND
                                                                                           hours of treatment with sound waves. By using         Dr Christopher Gibson
                                           –   based on carbon nanotubes and silicon:                                                                                                                 Transmission electron micrograph of
                                                                                           Microscopy Australia facilities in South Australia    Refs: M Bat-Erdene et al. 2017,                      atoms in a phosphorene flake.
                                               the main challenge with these cells is
                                                                                           for a wide range of visualisation and analytical      Small Methods 1, 1700260
                                               efficiency.

PER YEAR =
                                                                                           techniques, the team was able to demonstrate
                                                                                                                                                 M Bat-Erdene et al. 2017,
                                           –   dye-sensitised solar cells (DSSC):          the ultra-thin phosphorene nanoflake structure
                                                                                                                                                 Adv. Funct. Mater. 27, 1704488
                                               thin-film, semi-flexible, translucent       and high quality of their phosphorene flakes.
                                               and simple to make, but use costly                                                                M. Batmunkh et al. 2018,

20TW
                                                                                           These flakes were then incorporated into both
                                               components such as platinum and                                                                   Angew. Chem. Int. Ed. 57, 2644 –2647
                                                                                           dye-sensitised and carbon nanotube–silicon
                                               ruthenium. Although they are not
                                                                                           solar cells to act as the electrocatalysts in these
                                               currently as efficient as crystalline
                                                                                           systems. This fabrication was supported by
                                               silicon cells, they have a wider range
                                                                                           the Australian National Fabrication Facility in
                                               of applications.
                                                                                           Adelaide.
                                                                                           The DSSC–phosphorene cells showed
                                                                                           superior photovoltaic efficiency of 8.31% which
                                                                                           outperforms expensive platinum-based DSSC.
                                                                                                                                                                                                           300nm
                                                                                           The carbon nanotube–silicon–phosphorene
                                                                                           solar cells gave a 25% improvement in power
                                                                                           conversion over the carbon nanotube–silicon
                                                                                           alone.                                                                                                     Atomic force microscopy image
Image: Morning sun seen from                                                                                                                                                                          of a flake of phosphorene.
the Apollo 7 spacecraft, NASA.

                                                                                                                                                                                                                    M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 28 – 29
RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

                  5
                        FISH SMELL
                Some fishes, especially sharks, are believed to have an acute sense of smell
                to help them detect food, mates or predators. Although a lot is known about
                bony fishes, data is still lacking for cartilaginous fishes such as sharks, skates
                and rays. The relative size of the olfactory bulbs (OBs) in the brains of animals,
                including fish, can be used to predict olfactory abilities, but it is not clear
                whether this is the best measure for sensitivity.

                Ms Victoria Camilieri-Asch, working with Prof.     Ms Camilieri-Asch has also used transmission
                Shaun Collin at the University of Western          electron microscopy to count the number of
                Australia (UWA) has used a number of               nerve cells taking signals into and out of the OBs
                microscopy techniques at Microscopy Australia      (left). She found huge differences: for one nerve
                at UWA to discover more. By using iodine-based     cell coming out of the OB, the shark has 200
                stains to enhance contrast for X-ray computed      times more nerve cells going to it, suggesting
                tomography (CT), she has visualised the brain      that the shark is much more sensitive to
                and olfactory system of two model species; the     olfactory information than the goldfish.
                brown-banded bamboo shark (right) and the          Ms Camilieri-Asch is also using confocal
                common goldfish. This has generated accurate       microscopy to look at the distribution of different
                3D models that she used to calculate the           receptor cells in the olfactory cavities of sharks.
                volume of the olfactory system. In collaboration
                                                                   Although cartilaginous fishes are considered
                with the VascLab at UWA and the PAWSEY
                                                                   evolutionarily primitive, they are certainly more
                Supercomputing Centre, these models are being
                                                                   complex than was initially thought. Studying
                used to study the water pressure and flow in the
                                                                   their olfactory abilities is contributing to a better
                nasal cavities of these species.
                                                                   understanding of their behaviour.

                                                                                                                           The brain is 30mm long

 0.1μm
Image details                                                                                                                                       M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 30 – 31
RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

  6     BECOMING                                                                                                  7     INSIGHTS INTO
        A FLOWER                                                                                                        PARKINSON’S DISEASE
How plants trigger their cells to develop into   In an experimental plant strain one of these                   Just as your parcels are packaged and                A number of microscopy techniques in
flowers has long confounded researchers.         molecules, called ACS1, accumulates to well                    delivered to your doorstep, so your body             Microscopy Australia’s UQ facility complimented
                                                 above normal levels, disrupting normal plant                   has molecular machines responsible for               other results from the LMB. Results revealed that
However, a new class of signalling molecules
                                                 growth. Prof. Leon’s group found that the                      packaging cellular cargo and ensuring it             three of the retromer proteins form a supportive
called apocarotenoids may hold the answer.
                                                 pattern of gene activity in these plants suggests              gets to the correct location within the cell.        network of arches that are docking points for
Plant biologists have recently shown that
                                                 that ACS1 promotes flower development.                         However, just as parcel delivery can go              control proteins. In cooperation with membrane-
apocarotenoid signals (ACS) give plants
                                                                                                                wrong, so it can in your body. Misdelivered          associated sorting proteins, they cause the
essential cues for root, leaf, and flower        To explore this possibility, Dr McQuinn analysed
                                                                                                                cellular cargo can lead to devastating               membrane to bend and form tubules. It is these
development, as well as protecting them          the plant architecture and leaf structure by
                                                                                                                neurodegenerative diseases such as                   tubules that deliver the cargo around the cell.
from adverse environmental conditions. How       using cryo scanning electron microscopy at
                                                                                                                Parkinson’s disease.                                 The structure shows that a mutation known to
they do this is being investigated by Dr Ryan    Microscopy Australia’s facility at the ANU and
                                                                                                                                                                     cause Parkinson’s disease might interfere with
McQuinn and Prof. Barry Pogson at the ARC        compared them to normal plants.                                An international team led by A/Prof. Brett Collins
                                                                                                                                                                     how the arches interact with each other.
Centre of Excellence for Plant Energy Biology                                                           100μm   from the University of Queensland (UQ), Dr John
                                                 Leaves usually develop in a spiral pattern
at the Australian National University (ANU) in                                                                  Briggs at MRC Laboratory of Molecular Biology        This work will allow scientists to better
                                                 (top), with an abundance of spiky hairs. The
collaboration with Prof. Patricia Leon at the                                                                   (LMB), UK, and Prof. David Owen at Cambridge         understand how mutations in retromer lead
                                                 experimental plants (bottom) lack the spiral leaf
National Autonomous University of Mexico                                                                        Institute for Medical Research, UK have joined       to neurodegeneration and potentially provide
                                                 arrangement and hairs. Instead, the surface
(UNAM).                                                                                                         with collaborators at the Max Planck Institute of    a basis for designing drugs to help treat the
                                                 is much bumpier with cells more closely
                                                                                                                Biochemistry, Germany, to solve the structure        disease.
                                                 resembling the part of a flower where pollen
                                                                                                                of retromer, the molecular machine responsible
                                                 attaches for pollination. This was confirmed                                                                        Ref.: Oleksiy Kovtun et al. 2018,
                                                                                                                for ensuring the safe and efficient transport of
                                                 when pollen came in contact with the lumpy                                                                          Nature 561, 561–564
                                                                                                                cellular cargo.
                                                 cells of the experimental plant, “inflating” like it
                                                                                                                                                                     View the video: Structure of the membrane-
                                                 would during pollination.                                      Retromer consists of four proteins bound to the      assembled retromer coat by cryo-electron
                                                                                                                membrane surrounding a cellular compartment          tomography. Oleksiy Kovtun & John Briggs.
                                                 ACS1 appears to be the first chemical signal
                                                                                                                called an endosome. It is found in species from
                                                 discovered that triggers flower formation.                                                                          www.youtube.com/watch?time_
                                                                                                                baker’s yeast to humans and controls molecular
                                                 Elucidating this previously enigmatic process                                                                       continue=7&v=nEuG2-FLAHA
                                                                                                                sorting – redirecting incoming molecules to
                                                 opens up potential new ways to control flowering
                                                                                                                where they need to go.
                                                 with significant implications for agriculture and
                                                 future food security.                                          Recently, the team determined the 3D structure
                                                                                                                of the entire yeast retromer complex in its                             Scan for Video
                                                                                                                assembled, membrane-bound state. Cryo-
                                                                                                                electron microscopy on frozen samples enabled
                                                                                                                the intricate details of the protein structures to
                                                                                                                be elucidated.

                                                                                                                                                                                                                         Image: Cryo-electron tomography of
                                                                                                                                                                                                                         tubules showing the retromer arches.

                                                                                                        100μm
                                                                                                                                                                                                                                                                M I C R O S C O P Y A U S T R A L I A | 2 0 1 8 | 32 – 33
RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

                                                                                                                                                       10μm
8
                                    CHALLENGE

FROM
                                    1. The heterogeneous nature of complex                Prof. Sahajwalla and her team use
                                       industrial waste makes it difficult to sort        Microscopy Australia at UNSW to monitor and
                                       and recycle, so much of it ends up in              modify their processes to arrive at the most
                                       landfill.                                          effective coatings.

AUTOMOTIVE                          2. Steels and hybrid steels that have high
                                       abrasion and corrosion resistance are
                                       highly valued for industrial applications.
                                                                                              Prof. Sahajwalla is working in recycling
                                                                                              science to enable global industries to

WASTE
                                       However, they are costly and difficult to              safely utilise toxic and complex waste
                                       produce.                                               as low-cost alternatives to virgin raw
                                                                                              materials and fossil fuels.
                                    An opportunity exists for innovation in
                                    complex industrial waste management and

TO ROBUST
                                    steel production. A combined solution could           She has already developed and commercialised
                                    have a global impact on productivity and              ‘green steel’ technology, which uses old rubber
                                    sustainability.                                       tyres and waste plastics to fuel steel making.
                                                                                          This innovation delivers zero-waste recycling

COATED STEEL
                                                                                          because the rubber and plastics are completely
                                                                                          consumed. It also significantly reduces the
                                    RESEARCH                                              amount of coal and coke used to fuel the
                                    ARC Laureate Professor at UNSW Sydney,                furnaces.
                                    Veena Sahajwalla, has developed a process
                                    to use complex automotive waste as an input
                                    stream to modify and toughen steel. Titanium                                                             Scanning electron micrograph showing the microstructure of the
                                    from paints, pigments and UV protection; silicon
                                                                                              IMPACT                                         ultrahard ceramic layer derived from waste materials.
SILICON FROM GLASS                  from glass, and nitrogen and carbon from              –    Provides durable steel products for
                                    plastics are transformed by using a precisely              industry’s demanding applications
                                    controlled, high-temperature procedure. They
                                    react to form titanium nitride and silicon nitride,   –    Reuses valuable resources –

NITROGEN AND CARBON FROM PLASTICS   ceramics that become chemically bonded to
                                    the surface of normal carbon steel. Carbides          –
                                                                                               towards zero waste
                                                                                               Saves raw, virgin materials –
                                    also form under these surface coatings. Both               more sustainable industry
                                    the nitrides and carbides increase hardness and

TITANIUM FROM PAINTS                improve resistance of the steel to corrosion and
                                    abrasion. The process is cost effective and can       Ref: Farshid Pahlevani, et al. 2016,
                                    be modified to customise the surface to suit the      Scientific Reports, 6:38740
                                    intended application of the material.                                                                                                                                                                         5μm
                                                                                          This work has been supported by ARC industrial
                                                                                          Transformation Hub – Green Manufacturing.
                                                                                          [Prof. Sahajwalla’s ‘green steel’ technology was   Prof. Sahajwalla at the furnace                    The cross-sectional microstructure of the
                                                                                          named on the US Society for Manufacturing                                                             ultrahard surface layer exposed using a focused
                                                                                          Engineers’ 2012 list of ‘innovations that could                                                       ion beam microscope.
                                                                                          change the way we manufacture’.]

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RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

SECURING CROP                                                                                              9

PRODUCTIVITY IN                                                                                          VIRTUAL
FUTURE CLIMATES                                                                                          LEAF
                                                                                                         CHALLENGE                                        RESEARCH                                                  IMPACT
                                                                                                         Leaves are the pivotal points for the            Prof. Margaret Barbour from the University            The proposed 3D virtual leaf will substantially
                                                                                                         exchange of water, carbon, and energy            of Sydney (UoS) won a Sydney Research                 improve our understanding of the many
                                                                                                         between the biosphere and the atmosphere.        Excellence Initiative 2020 grant from the             nuances of leaf anatomy and function.
                                                                                                         So far, it has been difficult to measure these   University to bring together the world’s leading
                                                                                                         processes within the leaf at a microscopic       plant biologists working in this area to review the   It will deliver fundamental insights into:
                                                                                                         scale. Plant biologists have resorted to         current state of knowledge and define priorities      –    movement of carbon dioxide and water
                                                                                                         highly simplified 2D imaging methods and         for future research.                                       within leaves over multiple scales
                                                                                                         1D models to study 3D leaf processes.
                                                                                                                                                          The resulting workshop spawned an international       –    relationships between leaf anatomical
                                                                                                         Measurements within leaves in 3D would
                                                                                                                                                          collaboration across three continents including            diversity and functional diversity
                                                                                                         enable a consensus framework to be
                                                                                                                                                          researchers from Harvard, Yale, the University
                                                                                                         established so leaf processes, such as                                                                 –    designing the most productive leaves for our
                                                                                                                                                          of California Davis, the University of Queensland
                                                                                                         photosynthesis and water transport, can be                                                                  major crop plants
                                                                                                                                                          and the Australian National University. This led
                                                                                                         accurately modelled through simulations.
                                                                                                                                                          to a landmark paper published in Trends in            The group’s goal for the next decade is to
                                                                                                                                                          Plant Science in October 2018. It showed how          pursue a coordinated, collaborative study of
                                                                                                                                                          recent advances in imaging and computational          detailed leaf anatomy for several model species
                                                                                                                                                          technology are enabling a data-rich scientific        representing a range of plant types. They can
                                                                                                                                                          pipeline that integrates 3D leaf measurement,         then apply the resulting data to model key
                                                                                                                                                          anatomical modelling, and biophysical simulation      3D leaf processes including photosynthesis,
                                                                                                                                                          from the sub-cellular to the tissue level and         respiration and water transport.
                                                                                                                                                          beyond. Imaging techniques, including serial
                                                                                                                                                          block face imaging, conducted at Microscopy
                                                                                                                                                          Australia’s UoS facility, were fundamental to this
                                           Data reconstruction showing parts of two cells in a wheat
                                           leaf. Cell walls in blue and purple, chloroplasts in green,                                                    visualisation, providing high-resolution images of
                                           mitochondria and peroxisomes in red, and thylakoid grana                                                       internal cellular anatomy.
                                           in yellow. Credit Elinor Goodman and Minh Huynh

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RESEARCH OUTCOMES & SOCIAL IMPACT – 2018

 10 CONCENTRATING SUNLIGHT                                                                                 11 SUPPORTING INDUSTRY                                                                                  12 BACTERIA
    IN SOLAR CELLS                                                                                            – AURUBIS                                                                                               LIKE IT ROUGH
                                                                                                                                                                                                                  Breast implants consist of an outer shell        They used X-ray microtomography in the
                                                                                                                                                                                                     20μm         and a filler material. One of the many risks     Microscopy Australia facility at the University
                                                                                                                                                                                                                  of breast implant surgery is the formation of    of Sydney to collect highly accurate 3D data
                                                                                                                                                                                                                  scar tissue around the implant in response       on the surface area and roughness of 11
                                                                                                                                                                                                                  to this foreign object in the body. Known as     available implants. These measurements
                                                                                                                                                                                                                  capsular contracture, the scar tissue can        enable unprecedented precision in the
                                                                                                                                                                                                                  squeeze the implant and cause distortion         modelling and classification of the various
                                                                                                                                                                                                                  and hardening of the breast tissue.              implants. The researchers also tested these
                                                                                                                                                                                                                                                                   implant shells to relate surface roughness to
                                                                                                                                                                                                                  Textured surfaces on breast implants were
                                                                                                                                                                                                                                                                   bacterial attachment and growth.
                                                                                                                                                                                                                  developed in the 1960s to improve tissue
                                                                                                                                                                                                                  incorporation and reduce capsular contracture.   The team’s research showed a significant
                                                                                                                                                                                                                  While textured surfaces can achieve this aim,    linear relationship between surface area and
                                                                                                                                                                                                                  they do promote more bacterial growth in         bacterial attachment/growth. For smoother
                                                                                                                                                                                                                  the lab, and it seems, in the body. As well as   implants there was some variation between the
                                                                                                                                                                                                                  causing infection, this bacterial growth can,    species of bacteria that preferred to grow on
                                                                                                                                                                                                                  in itself, encourage capsular contracture.       the individual types.
   10nm                                               100nm                                                                                                                                                       This complex area calls for a combination of
                                                                                                                                                                                                                                                                   These measurements provide a vastly
                                                                                                                                                                                                                  laboratory and clinical research.
                                                                                                                                                                                                                                                                   improved system to enable surgeons to
                                                                                                                                                                                                                  Many types of implants are available with        better correlate objective measurement with
Photovoltaic cells convert light from the Sun      The researchers first lay down a continuous layer      Aurubis AG, with its headquarters in                Images from this commercial work are                surfaces ranging from very smooth to highly      functional outcomes.
into electricity and are the main components       of gold on the silicon, surrounded above and           Germany, is one of the world’s major copper         confidential, so the example above comes from       textured. Prof. Anand Deva, and his team at
                                                                                                                                                                                                                                                                   Ref: P. Jones, et al. 2018,
of the solar panels placed on rooftops to          below by two barrier layers to restrict the particle   producers. Their Research, Development and          an unrelated copper smelter. The image shows        Macquarie University aimed to investigate
                                                                                                                                                                                                                                                                   Plast. Reconstr. Surg., 142, 4, 837-849
harvest energy. If solar panels could be made      elongation process. The system was heated              Innovation (RDI) team is always seeking ways        the complex microstructure and mineralogy           these different surfaces to systematically
cheaper and more efficient they would be           to make the gold form into spheres and then            to increase efficiency in processing more and       of some waste material. The bright spherical        study the relationship between surface
more widely used. One way to increase their        irradiated with various doses of high energy gold      more complex raw materials.                         particles are valuable copper remaining in          area, roughness, and capacity for bacterial
efficiency is to concentrate light coming into     ions in order to cause controlled elongation of                                                            the slag after “extraction”. Microanalysis like     attachment and growth in the lab.
                                                                                                          “Knowledge of the behaviour of feed/product
the cell. This can be achieved by adding a         the round particles.                                                                                       this helps plant engineers to make informed
                                                                                                          materials at various process stages provides
thin transparent layer filled with small metal                                                                                                                decisions on how to minimise copper loss in the
                                                   At the Microscopy Australia facility at ANU,           important guidance for any modification or new
particles that help direct light that would                                                                                                                   smelting processes.
                                                   the researchers used transmission electron             design of the process flow”, says Dr Ata Fallah,
otherwise be reflected or scattered, into the
                                                   microscopy (TEM) to examine the features               Senior Manager of Pyrometallurgical Process         More accurate information on metal loss and
solar cell.
                                                   produced in their process. High dose irradiation       Characterisation, RDI at Aurubis AG. “Careful       element behaviour can be obtained using
                                                                                                                                                                                                                  X-ray microtomography images
Optimised cell performance will depend on the      led to a dense array of elongated gold particles       characterisation of materials produced in these     these microanalysis techniques than by the
                                                                                                                                                                                                                  of a selection of implant shells
size, shape and density of metallic particles      forming in the middle layer. Further studies           stages is one of the first steps towards building   bulk analysis methods conventionally used at        showing surface roughness.
in the added layer. Pablo Mota-Santiago            to evaluate the effectiveness of the different         the knowledge base.”                                metallurgical processing plants. Microscopy
and A/Prof. Patrick Kluth from the Australian      particles in concentrating light can now take                                                              Australia’s advanced micro-imaging and              Each sample is 1.4mm square.
                                                                                                          Microscopy Australia at the Australian National
National University (ANU) are collaborating with   place.                                                                                                     microanalysis facilities empower problem-solving
                                                                                                          University has provided microscopic level
researchers in France and have focused on ways                                                                                                                at the industrial level, letting Aurubis maximise
                                                   Image: TEM images of the spheres (left) and            analysis by using electron microprobe and
to control the size of elongated gold particles                                                                                                               value from its processes.
                                                   elongated gold particles (right)                       QEMSCAN analysis to characterize Aurubis’s
deposited on a silicon wafer.
                                                                                                          materials during the copper smelting process.

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