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LUDWIG LINK | APRIL 2021 LUDWIG IN THIS ISSUE 4 | Breaking 18 | Q&A with LINK news Lana Kandalaft Ludwig opens a new The challenges and Branch at Princeton hopes of developing APRIL 2021 University cancer vaccines 1 LIFE-CHANGING SCIENCE
ON THE COVER As a lighter take on scientific illustration, this artwork was created to depict Ludwig Harvard Co-director Joan Brugge’s study demonstrating that NRF2 hyperactivation, in cooperation with GPX4, maintains the survival of inner matrix-deprived cells within 3-dimensional tumor spheroids by mitigating ferroptosis, the lipid peroxidation-induced non-apoptotic cell death. The illustration, by Rachel Davidowitz, depicts the fate of inner spheroid cells in the presence or absence of NRF2 hyperactivation. Inner spheroid cells (represented as wooden houses) are vulnerable to lipid peroxidation (fire), compared to outer cells (brick houses). NRF2 hyperactivation (firefighter LUDWIG LINK | APRIL 2021 with water hose) and GPX4 (firefighter with bucket of water) neutralize lipid peroxidation, resulting in the formation of filled spheroid structures. You can read about the study on Page 16. 2
LUDWIG LINK ludwigcancerresearch.org APRIL 2021 LETTER TABLE OF CONTENTS Welcome to the spring issue of Ludwig Link! BREAKING NEWS 4 A 50th anniversary splash 4 This season is said to be all Awards and distinctions 5 about new beginnings, so it’s For enduring contributions 5 fitting that Ludwig just launched For epigenetic research 5 a new Branch at Princeton In memoriam 6 University dedicated to the José Baselga 6 study of cancer metabolism. You can read all about it in Sir Derek Roberts 6 here. Ludwig scientists at all the other locations have, Angelika Amon 7 meanwhile, given us much else to cover. You’ll read Pierre Languetin 7 about how targeting certain gut bacteria might boost the efficacy of radiotherapy, how a common nutritional Events 8 supplement could restore the activity of exhausted anti- Virtual conference: LUDWIG LINK | APRIL 2021 Exercise and cancer prevention 8 cancer T cells in tumors—and much, much more. News roundup 9 You’ll also see in here a brief report on an engaging virtual Immune revival 9 Cancer Prevention and Physical Activity Conference Gut reaction 10 Ludwig convened in February in partnership with Cancer TAPS and more 10 Research UK and with support from the Conrad N. Hilton Stop signal 11 Foundation. The conference was one of several events Target: TNBC 11 planned this year to celebrate Ludwig’s 50th anniversary. The immunologic X-factor 12 Fuel gauge 12 An essential inefficiency 13 On a sadder note, we share the loss of four friends Shattered sources 13 of Ludwig—former Ludwig Institute Board members Structural solution 14 Sir Derek Roberts and Pierre Languetin, Ludwig MIT Liquid crystal dysfunctions 14 investigator Angelika Amon and former Scientific Advisor Tired TIL recharge 15 José Baselga. Personal nanovaccine 15 Rescued from ROS 16 The interview in this issue is with Ludwig Lausanne’s Lana Direct-on predictions 16 Kandalaft. And we asked Ludwig scientists to tell us how Carts of mice 17 the pandemic changed their perspective on balancing Clinical trials 17 work and personal life. See some select responses in our Going viral 17 “Ask a scientist” section. Q&A with Lana Kandalaft 18 Happy reading! Ask a scientist 23 Rachel Reinhardt Required reading 25 Senior Vice President for Communications 3
Breaking news A 50th ANNIVERSARY SPLASH Ludwig Cancer Research announced on Altered metabolism is a salient feature The Ludwig Princeton team: its 50th anniversary the newest Branch of cancer biology, as cancer cells Kim Sokoloff of the Ludwig Institute for Cancer must rewire their metabolic circuitry Research. Based at Princeton University, to sustain their proliferation. Such the Ludwig Princeton Branch will be adaptations not only drive tumor growth, wholly dedicated to the study of cancer but cripple the anti-tumor immune metabolism and the clinical translation response and compromise cancer of its findings, which will be conducted immunotherapy as well. Metabolic in partnership with RWJBarnabas Health dysfunction also causes the wasting and Rutgers Cancer Institute of New disorder known as cachexia that Jersey and other institutions. contributes enormously to cancer- related mortality. Yet the metabolic Joshua Rabinowitz “A more sophisticated understanding of rewiring comes at a cost to cancer cells: John O’Boyle cancer metabolism holds considerable it creates biochemical vulnerabilities LUDWIG LINK | APRIL 2021 promise for the optimization of cancer that can be exploited for cancer prevention and therapy, yet few prevention and therapy. organizations have assembled a critical mass of experts dedicated exclusively to The Ludwig Princeton Branch will this promising frontier of research,” said focus on three main areas of cancer Chi Van Dang, scientific director of the metabolism: metabolic interactions Ludwig Institute for Cancer Research. between the tumor and the rest of the “The Ludwig Princeton Branch will fill body, including how the body supports that gap.” tumor growth and metastasis, and Eileen White how tumors induce cachexia; dietary Kim Sokoloff Ludwig Princeton is directed by strategies for the prevention and Princeton University’s Joshua treatment of cancer; and the interplay Rabinowitz, and two other scientists of host metabolism, the gut microbiome have been named founding Members of and the anti-cancer immune response. the Branch: Associate Director Eileen White, of Rutgers University and Yibin “Every one of us chooses, day-by-day, Kang, also of Princeton University. what to eat,” said Ludwig Princeton Branch Director Josh Rabinowitz. “This new partnership goes to the heart “These choices don’t just impact of what Princeton is all about. It draws metabolic health, but also immunity and Yibin Kang on Princeton’s breadth of excellence cancer risk. We want to understand the in fundamental research to drive real- underlying biochemical mechanisms and world breakthroughs at the cutting apply this knowledge to find new ways to edge of cancer care,” said Princeton prevent and treat cancer.” University Provost Deborah Prentice. 4
Awards and distinctions FOR ENDURING CONTRIBUTIONS In November, Ludwig Lausanne received a conducted groundbreaking research Team Science Award from the Society for on individualized immunotherapies— Immunotherapy of Cancer for landmark such as dendritic cell vaccines and research in basic and tumor immunology. the engineering and reinfusion of The award recognizes research teams T cells for cancer therapy. Ludwig around the world that have made lasting Lausanne scientists have made contributions to the field of cancer significant discoveries on the immune immunotherapy. Established in 1973 microenvironment of brain and ovarian under the leadership of the immunologist tumors, the identification of potent Jean-Charles Cerottini, the Lausanne patient-specific neoantigens for use Branch initially led pioneering studies in novel immunotherapies and the George Coukos on the development and functional mechanisms by which cancer metabolism Ludwig Lausanne diversification of the immune system’s thwarts the immune response. Several T cells, the underlying mechanisms and Ludwig researchers and alumni were also LUDWIG LINK | APRIL 2021 dynamics of their responses and their recognized as members of other teams recruitment for cancer immunotherapy. that received Team Science Awards, The Branch today, directed by George including one led by former Ludwig CEO Coukos, continues that tradition. It has and Scientific Director Lloyd Old. FOR EPIGENETIC RESEARCH Stephen Baylin, the Virginia and D.K. field and has led the development of Ludwig Professor at Johns Hopkins biomarkers for cancer diagnostics and School of Medicine, has been elected novel strategies that target epigenetic Fellow of the American Association for mechanisms for the treatment of the Advancement of Science. He was cancer. Stephen recently joined recognized for his work on the influence Ludwig Oxford as a visiting professor of epigenetic modifications—chemical of cancer epigenetics, where he will “marks” made on DNA and its protein advise the Branch on its research in scaffolding—on gene expression and cancer epigenetics and help guide its cancer progression. More than 30 years collaborations in that area. He has also ago, Stephen co-discovered cancer- been elected to the American Association Stephen Baylin specific changes in the distribution of Physicians and is a member of the Ludwig Johns Hopkins of DNA methylation that aberrantly National Academy of Sciences and silence genes in cancer cells. He has co-leader of a Stand Up To Cancer since remained at the forefront of the Dream Team for epigenetic therapy. 5
In memoriam JOSÉ BASELGA Former Scientific Advisor José Baselga, cancer treatments, particularly against who helped guide the Ludwig Institute’s breast cancer. He was also known for scientific strategy and staffing for his contributions to our understanding ten years before leaving the Scientific of how dysregulation of the PI3K Advisory Committee in 2016, died March signaling pathway drives the genesis 22nd from Creutzfeldt-Jakob disease, of cancers, and the translation of that a rare, degenerative brain disorder. understanding into cancer therapies. He was 61. At the time of his death, He was a Fellow of the American José was executive vice president of Association for Cancer Research and a oncology research and development for former President of the organization. He AstraZeneca. José was renowned for his is survived by his wife Silvia and his four work in developing and testing targeted children. LUDWIG LINK | APRIL 2021 SIR DEREK ROBERTS Former Ludwig Institute Board Member in industrial scientific research, first Sir Derek Roberts passed away on at Plessy—one of Britain’s largest February 17th, one month shy of his 89th electronics manufacturers—developing birthday, due to complications from complex integrated circuits, and COVID-19. He served on the Board for subsequently, heading up General nearly 14 years before stepping down in Electric’s research activities. Elected 2012. An engineer who was twice provost a Fellow of the Royal Society and of the of University College London, Sir Derek Royal Academy of Engineering in 1980, Photo courtesy the Roberts family oversaw several successful projects he was awarded a Commander of the and the university’s expansion during British Empire in 1988 and knighted in his tenure, including its merger with 1995 for services to engineering and the Institute of Child Health. He was an education. The following year, he was early pioneer of silicon-based integrated elected president of the British Science circuit technology, now ubiquitous in Association. Read an interview with Sir electronic devices from PCs to satellites. Derek in the November 2012 issue of His professional life was spent primarily Ludwig Link. 6
In memoriam ANGELIKA AMON Ludwig MIT investigator Angelika Amon the world,” she said. “It’s like Christmas passed away in October from ovarian when you were five. The beauty of cancer. A prolific scientist, Angelika experimental science is that these pioneered research on the underlying eureka moments are often shared with mechanisms and consequences of other scientists, and I’m privileged to chromosomal abnormalities, such as have experienced this.” Angelika was aneuploidy, on fundamental processes a member of the National Academy of of cellular life and demonstrated how Sciences, the American Academy of those dysfunctions contribute to Arts and Sciences and the European developmental disorders and cancer. Molecular Biology Organization. She Other studies in her laboratory yielded was also a professor of Biology at insights into the relationship between MIT, Member of the Koch Institute for stem cell size, function and tissue aging. Integrative Cancer Research, and was Angelika described what she loved most recently named Co-director of the Alana LUDWIG LINK | APRIL 2021 about science in 2019, when accepting Down Syndrome Center at MIT. Click here the Breakthrough Prize in Life Science. for a short video of Angelika speaking “Making a discovery is the best feeling in about her work. PIERRE LANGUETIN Pierre Languetin, a former Ludwig for Economic Cooperation and Board Member, passed away in October. Development and the European Free A Swiss diplomat and central banker, Trade Organization. In 1976, he began he joined the Board of Directors of the a decade-long stretch as a member Ludwig Institute for Cancer Research of the governing Board of the Swiss in 1987 and served with distinction for National Bank, and was named two decades. Pierre was born on April chairman of its Executive Board in 30, 1923, in Lausanne and was educated 1985. In addition to his service to the at the University of Lausanne and the Ludwig Institute, Pierre also served on London School of Economics. A former the boards of numerous organizations, trade negotiator, he often represented including Sandoz, Paribas Suisse and Switzerland at the Organization the Swiss Reinsurance Company. 7
Events VIRTUAL CONFERENCE: EXERCISE AND CANCER PREVENTION When Ludwig Cancer Research and the Conrad N. Others discussed technical issues in clinical studies of Hilton Foundation launched a $10 million Cancer exercise and cancer. Kirsten Rennie of the University Prevention Initiative in 2015, among their stated of Cambridge, for example, stressed the importance goals was the promotion of cancer prevention in the of measuring physical activity independently in free scientific and medical community, and support for its living, pointing to huge differences between self- incorporation into public policy. A Cancer Prevention reports and objective measures of exercise among and Nutrition Conference, convened in London in prostate cancer survivors. On the matter of behavioral partnership with Cancer Research UK in 2018, along interventions, Wendy Wood of the University of with a publication that emerged from the meeting, was Southern California argued that activities reinforced by a first step in that direction. The second was taken rewards—even just “fun”—are more likely to establish from February 23rd to 25th, 2021, in an international, healthful habits, and discussed why habit, more than virtual Cancer Prevention – Physical Activity rationale, might sustain healthful behaviors. Conference organized by the same partnership. LUDWIG LINK | APRIL 2021 On the final day, a fascinating session covered the role After opening remarks by Scientific Director Chi Van of the built environment in medical outcomes, with Dang and Ludwig Oxford’s Peter Ratcliffe, speakers speakers pointing out how little health considerations covered the existing epidemiology on physical factor into urban planning decisions. In one particularly exercise and cancer, followed by a session on the engaging talk, Rich Mitchell of the University of molecular and physiological mechanisms that might Glasgow discussed his studies examining how poverty drive such effects. In the latter session, Ludwig and the built environment interact with such things as Harvard investigator Rakesh Jain discussed his lab’s childhood activities and transportation to expose kids discovery that exercise normalizes the vasculature of to certain foods, tobacco and other factors with lasting the tumor, improves anti-cancer immune responses consequences for health. and reduces metastasis in mouse models. Memorial Sloan Kettering’s Lee Jones, meanwhile, presented In a concluding Big Ideas session of the conference, his preclinical studies on the significant benefit of Chi noted the pressing need to figure out the exercise on slowing progression of certain types of mechanistic basis of exercise effects on the breast cancer. pathophysiology of cancer. He raised the intriguing possibility that a mechanistic understanding could The second day covered clinical studies of also lead to pharmacological interventions with physical exercise in cancer outcomes and those of matching effects for patients who can’t exercise due interventions that seek to instill healthier behaviors. to their condition. A poll conducted during this session One speaker, Robert Newton of Edith Cowan University, suggested most attendees agreed that mechanistic presented an ongoing study showing that changes in studies are the order of the day. This should help guide immune factors induced by exercise might slow growth the research agenda of the field. of prostate cancer cells even when men are resting. 8
News roundup Taha Merghoub Sadna Budhu Jedd Wolchok Ludwig MSK Ludwig MSK Ludwig MSK IMMUNE REVIVAL LUDWIG LINK | APRIL 2021 Phosphatidylserine (PS) is a small effect was accompanied by an increase molecule mainly found at high levels in the proportion of pro-inflammatory on the outer membrane of dying cells, macrophages and an increase in the from where it is known to promote an recruitment and activation of T cells in immunosuppressive microenvironment tumors. Adding anti-PD-1 checkpoint in tumors through its interaction with blockade immunotherapy to the mix its receptors. A study led by Ludwig further enhanced T cell activation, MSK researchers Taha Merghoub, Sadna responses to radiotherapy and survival Budhu and Jedd Wolchok published in of the mice. The researchers also Cell Reports in January found expression showed that immune cells in the blood of of PS on live tumor-infiltrating immune melanoma patients who have received cells rises after a single dose of radiation radiotherapy similarly express higher delivered to melanoma tumors in levels of PS. These findings suggest mice. The researchers found that PS- that patients could benefit from the blockade with the antibody mch1N11 concurrent blockade of PS and PD-1 in enhanced the effects of radiotherapy combination with radiotherapy. and extended survival of the mice. The 9
News roundup GUT REACTION In a study published in the Journal of by Ralph and Yang-Xin have shown that Experimental Medicine in January, Ludwig radiation activates a signaling pathway in Chicago Co-director Ralph Weichselbaum dendritic cells that primes other immune and Yang-Xin Fu of the University of Texas cells—killer T cells—to attack tumors. This Southwestern Medical Center showed pathway, controlled by a protein named how certain gut bacteria can reduce the STING, ramps up the dendritic cells’ efficacy of radiotherapy. They identified production of immune-stimulating factors two families of bugs—Lachnospiraceae known as type-1 interferons (IFN-I), which and Ruminococcaceae—that interfere boost T cell activation. In this study, they with radiotherapy in mice and described show that butyrate inhibits a step of the how the short-chain fatty acid butyrate, biochemical signaling cascade that links Ralph Weichselbaum a metabolic byproduct of these bacteria, STING activation to the production of Ludwig Chicago undermines the therapy. The antibiotic IFN-I. The researchers suggest that the vancomycin decreased the abundance highly selective targeting of butyrate- LUDWIG LINK | APRIL 2021 of butyrate-producing gut bacteria and producing gut microbiota may augment enhanced antitumor responses following the radiotherapy sensitivity of tumors and radiotherapy in mice. Previous studies led improve patient responses. TAPS AND MORE Chemical, or epigenetic, modifications named TET-assisted pyridine borane made to the DNA base cytosine play an sequencing (TAPS). Now the gold important role in the regulation of gene standard of such technologies, TAPS expression across the genome. The was at the heart of a biotech spin- base is chemically modified with four off that was bought late last year by chemically and functionally distinct Exact Sciences, which will use the “marks”, with 5-methylcytosine (5mC) method in novel cancer diagnostics. In being the most common and most January, researchers led by Chunxiao frequently disordered in cancer. The and his University of Oxford colleague others are 5-hydroxymethylcytosine Ahmed Ahmed reported in Nature (5hmC), 5-formylcytosine (5-fC) and Communications an expanded toolkit for Chunxiao Song 5-carboxycytosine (5caC). The Ludwig the direct and quantitative sequencing Ludwig Oxford Oxford laboratory of Chunxiao Song of all four cytosine epigenetic marks—a reported in 2019 a sensitive, cost- new version of TAPS for 5mC (named effective and efficient method for the TAPSβ) and brand new methods for the whole-genome sequencing of 5mC other three. 10
News roundup STOP SIGNAL TARGET: TNBC During cell division, protein cables Triple negative breast cancers (TNBC) called microtubules latch on to a copy bearing mutations to their BRCA genes of every chromosome at a structure can be treated with a class of drugs known called the kinetochore and pull one of as PARP inhibitors, but the benefits of this each to opposite poles of the dividing therapy are often fleeting. Since PARP cell. In healthy cells, this choreographed inhibitors can also help stimulate anti- segregation of chromosomes is tumor immune responses, researchers monitored by a “spindle checkpoint” that are already examining their combination halts cell division if even one kinetochore Arshad Desai with immunotherapy to improve is not firmly attached to a microtubule, Ludwig San Diego outcomes. In a December paper in Nature ensuring that chromosomes are equally Cancer, a team led by Ludwig Harvard distributed to each daughter cell. In investigator Jennifer Guerriero exposed a January paper in Science, Ludwig a potential challenge to such strategies— San Diego’s Arshad Desai, Pablo Lara- and offered a possible solution. PARP LUDWIG LINK | APRIL 2021 Gonzalez and colleagues detailed the inhibitors, the researchers showed, can mechanism by which the checkpoint also promote an immune-suppressive is generated by the association of two tumor microenvironment (TME), pushing proteins, Cdc20 and Mad2. Using a visual immune cells known as macrophages in probe that tracks one of the proteins, the TME into an immunosuppressive state the team detailed how Cdc20 and Mad2 through the reprogramming of their lipid are geometrically constrained at the metabolism. These immunosuppressive kinetochore, held in a particular position Pablo Lara-Gonzalez macrophages express high levels of the by phosphorylation events that prime Ludwig San Diego CSF-1 receptor, which is essential to their their interaction, and how their enzymatic survival. Jennifer and her colleagues substrates are locally delivered to them demonstrated that treating mice bearing to generate the wait signal. The findings BRCA-deficient TNBC tumors with a help explain why that signal is generated combination of PARP inhibitors and at kinetochores and not elsewhere CSF-1R blocking antibodies extended in the cell, thereby ensuring that no survival of the animals. The effect chromosome is left behind. was mediated primarily by activation of cancer-targeting killer T cells in the less immunosuppressive TME. The authors suggest that combining PARP inhibition with CSF-1R inhibition could be a Jennifer Guerriero promising therapeutic strategy for BRCA- Ludwig Harvard deficient TNBCs. 11
News roundup THE IMMUNOLOGIC FUEL GAUGE X-FACTOR Sick animals often lose their appetites. Though this behavior is widely observed The liver X receptor β (LXRβ) is a nuclear across species, its consequences on the receptor that plays a key role in the effector T cells battling infection was regulation of lipid and cholesterol not clear. In a December paper in the metabolism and inflammatory immune Proceedings of the National Academy of responses. Yet its precise role in T cell Sciences, Ludwig MSK Director Alexander biology has thus far been unclear. In a Rudensky and colleagues showed that December Brief Definitive Report in the Alexander Rudensky starvation during infection decreases Journal of Experimental Medicine, a team Ludwig MSK the number of effector T cells in mice led by Ludwig MSK’s Alexander Rudensky through mechanisms governed by the and Clarissa Campbell revealed that the cells’ Farnesoid X Receptor (FXR), a loss of LXRβ in a mouse model leads to a nuclear receptor also involved in liver severe deficiency of T cells accompanied responses to fasting and refeeding. That LUDWIG LINK | APRIL 2021 by the spontaneous activation of effector loss of effector T cells, they showed, T cells. Studies of chimeric mice with could be reversed by the provision of the mixed populations of LXRβ-deficient T sugar glucose, supporting the sugar’s cells and normal T cells showed that the availability as a determinant of effector receptor is needed for T cell fitness, and T cell survival. Deletion of FXR in T cells that its loss especially compromises prevented their loss during starvation, regulatory T cells (Tregs), which suppress altered their utilization of fuel from effector T cells and protect tumors from Clarissa Campbell glucose to other nutrients and improved anti-cancer immune responses. LXRβ Ludwig MSK their fitness. It also caused weight loss deficiency, Alexander and his colleagues in the mice. The study, supported by show, profoundly compromises Treg the Ludwig-Hilton Cancer Prevention function. Indeed, the loss of just one Initiative, identified a mechanism by copy of the LXRβ gene in Tregs suffices which the host scales immune responses to induce early and fatal autoimmune in reaction to nutrient availability, and disease in mice. The researchers argue showed that FXR is the sensor in T cells these findings suggest the receptor that triggers those responses. could be a prime target for immunological therapies. 12
News roundup AN ESSENTIAL SHATTERED SOURCES INEFFICIENCY Circles of DNA unassociated with Cancer cells burn sugar using an chromosomes, extrachromosomal inefficient metabolic pathway known as DNAs (ecDNA) encode multiple copies fermentation, which captures much less of cancer genes and drive tumor energy as ATP and which most healthy evolution, growth and drug resistance. cells—except rapidly proliferating ones, Identifying where ecDNA comes from like activated T cells of the immune has been an important challenge of system—use mainly when starved of cancer research. In December, a team oxygen. A study led by Ludwig MIT’s Matthew Vander Heiden led by Ludwig San Diego’s Don Cleveland Matthew Vander Heiden and published Ludwig MIT and Peter Campbell of the Sanger in December in Molecular Cell examined Center reported in Nature that ecDNAs why this is the case. Matthew and his are formed by chromothripsis—or the colleagues show that fermentation, or shattering and shuffled reassembly aerobic glycolysis, helps cells regenerate of chromosomes. While earlier work LUDWIG LINK | APRIL 2021 large quantities of NAD+, a chemical led by Don and Peter had established essential to the synthesis of some large that chromothripsis of missegregated molecules like DNA that all cells need chromosomes can produce the complex to divide. Inhibiting fermentation and genome rearrangements found in many forcing cancer cells to make ATP, the tumors, the researchers now report that currency of cellular energy, through chromothripsis drives the evolution of aerobic respiration slowed their growth. gene amplification in cancer through When those cells were then additionally Don Cleveland production of ecDNA, including the treated with a drug that stimulates NAD+ Ludwig San Diego induction of drug resistance through regeneration, however, their proliferative the generation of ecDNAs carrying a frenzy was restored. Cancer cells, it gene that inactivates an anticancer appears, need NAD+ more than they drug. They showed that once formed, do ATP. When ATP abounds, aerobic ecDNA undergoes successive rounds respiration slows down, and so does of chromothripsis to spawn additional mitochondrial NAD+ regeneration. rearranged ecDNAs that drive increased Cancer cells and activated T cells, the drug resistance by further amplification researchers demonstrate, maintain high of genes responsible for the resistance. levels of NAD+ by employing the less The study lays the groundwork for efficient generator of ATP: fermentation. combination therapy in which a The findings suggest drugs that force chemotherapeutic drug is paired with cancer cells into aerobic respiration or another drug that prevents the DNA inhibit NAD+ production could be useful as fragments created by chromosomal cancer therapies. shattering from closing to form ecDNA circles. 13
News roundup STRUCTURAL SOLUTION The poison arsenic is a well-worn device of to the large variety of p53 mutations, crime novels. But in low doses it can also be their diverse effects and a lack of a useful treatment for acute promyelocytic sites on the p53 protein that can be leukemia. Building on the latter theme, a easily targeted by drugs. However, study led by Ludwig Oxford Director Xin over half of all p53 mutations cause Lu and Min Lu of the Shanghai Institute of structural alterations that affect Hematology performed a screen for drugs p53 activity. These mutants were that could reactivate mutant forms of the the focus of the study reported in p53 tumor suppressor and found that arsenic Cancer Cell in December. For some compounds—including arsenic trioxide— of the structural mutations, arsenic rescued some structural defects in p53. trioxide was also able to reactivate Xin Lu Although p53, called the “guardian of the the tumor suppressor function of Ludwig Oxford genome,” is the most frequently mutated p53 in experimental models. It is now gene in human cancer, efforts to devise being tested in a phase I clinical trial LUDWIG LINK | APRIL 2021 drugs that reactivate the mutated protein in patients with p53-mutated blood have generally come up short. This is due cancers. LIQUID CRYSTAL DYSFUNCTIONS Loss of function of the RNA-binding protein cores. In animal studies, inhibiting the TDP-43 is seen in neurodegenerative proteasome—which degrades proteins— diseases, such as ALS, Huntington’s within neurons to mimic the aging-related disease and Alzheimer’s disease. A study decline in its activity induced the formation led by Ludwig San Diego’s Don Cleveland of TDP-43-containing spherical shells. The reported online in Science in December that shells convert into aggregates when ATP RNA-binding deficient TDP-43—which is levels drop. These findings suggest the TDP- produced by neurodegeneration-causing 43 aggregation seen in neurodegenerative mutations or biochemical modifications to diseases may have its origins in anisosomes. the protein—drives TDP-43 de-mixing into The study also explains the peripheral liquid spherical shells with liquid cores in the neuropathy caused by bortezomib, a Don Cleveland nuclei of neurons. Don and his colleagues proteasome inhibitor used to treat multiple Ludwig San Diego named these structures anisosomes and myeloma. The researchers showed that identified the major components of the anisosomes form in sensory neurons in liquid core to be HSP70 family chaperones, bortezomib-treated mice and rats and are whose activity, powered by the molecule thus likely to form in multiple myeloma ATP, maintains the liquidity of shells and patients who develop peripheral neuropathy. 14
News roundup TIRED TIL RECHARGE PERSONAL NANOVACCINE Ludwig Lausanne’s Ping-Chih Ho and his colleagues reported in Nature Immunology Ludwig Chicago investigator Wenbin Lin in October a novel mechanism by which and his colleagues reported in Science the harsh microenvironment of the Advances in October their design and tumor enervates tumor-infiltrating T preclinical evaluation of a combined lymphocytes (TILs). They also showed nanotechnology-based radiotherapy that a common nutritional supplement, strategy that effectively generates a nicotinamide riboside (NR), could personalized cancer vaccine within the revive the anti-tumor activity of the Ping-Chih Ho body. It revolves around nanoparticles TILs. Starved of oxygen and essential Ludwig Lausanne named nanoscale metal-organic nutrients in tumors, TILs adjust metabolic frameworks (nMOFs) developed in processes to compensate, in part by Wenbin’s lab that amplify the cell-killing making more mitochondria (the energy free radicals generated by radiotherapy, generators of the cell). Meanwhile, boosting its effects. Wenbin’s team LUDWIG LINK | APRIL 2021 prolonged and fruitless stimulation by adapted their nMOFs to carry an adjuvant, cancer antigens pushes TILs into an a substance that stimulates vaccine- exhausted state. Ping-Chih and his team induced immune responses. The adjuvant, found that exhausted TILs are packed known as a CpG oligonucleotide, drives with dysfunctional mitochondria, mainly the maturation of the immune system’s because the TILs can’t remove damaged dendritic cells, which activate and direct ones. This, they showed, is a cause, not a cytotoxic T cells toward cancer cells. consequence, of exhaustion. NR has been Wenbin Lin In mouse models of pancreatic and shown by Ludwig Lausanne researchers Ludwig Chicago colon tumors, which tend to harbor few and others to improve mitochondrial viable cytotoxic T cells and so resist fitness, so Ping-Chih and his colleagues immunotherapy, irradiating tumors examined whether it might rescue TILs treated with the nMOFs caused a release from terminal exhaustion. Their cell of the CpG adjuvant and the shedding of culture experiments showed that NR cancer antigens and molecular danger improved the mitochondrial fitness signals by dying cells. This drove dendritic and function of T cells in conditions cell maturation and activation, which resembling those of the tumor. More stimulated anti-tumor T cells and caused notably, dietary supplementation with regression of treated tumors. When NR stimulated the anti-tumor activity combined with anti-PD-L1 checkpoint of TILs in mouse models of melanoma blockade immunotherapy, the treatment and colon cancer. When combined with elicited immune responses against checkpoint blockade immunotherapies, it untreated tumors as well—and an 83% also significantly inhibited the growth of cure rate in mice implanted with the tumors in the mice. immunosuppressive colon cancer. 15
News roundup RESCUED FROM ROS DIRECT-ON PREDICTIONS Cancer-associated mutations are known Immune checkpoint inhibitors like anti- to stabilize the transcription factor, PD-1 antibodies improve survival in NRF2, that controls the expression of advanced non-small cell lung cancer genes involved in cellular antioxidant (NSCLC). However, conventional imaging defense systems, which shield DNA often can’t identify which patients treated and other vital molecules from highly with these agents will benefit from such reactive molecules called reactive oxygen therapy. In a Cell paper published in species (ROS). In a Molecular Cell paper October, a team led by Ludwig Stanford’s published in October, Ludwig Harvard Joan Brugge Ash Alizadeh and Maximilian Diehn and Co-director Joan Brugge and colleagues Ludwig Harvard Matthew Hellmann of Memorial Sloan reported their analysis of how NRF2 Kettering Cancer Center reported a contributes to cancer cell growth and method to accurately predict early in survival in experiments using lung cancer treatment which patients with NSCLC spheroid models—cultured, three- are likely to benefit from PD-1 checkpoint LUDWIG LINK | APRIL 2021 dimensional mimics of tumors. Their blockade. Called DIREct-On, (for Durable studies showed that its hyperactivation Immunotherapy Response Estimation is required for both proliferation and by immune profiling and ctDNA-On survival of spheroid cultures, though treatment), the method incorporates distinct signaling pathways control each three types of biomarkers to predict outcome. A pathway mediated by mTOR treatment responses: the level of supports proliferation. As for survival, mutation in tumors, changes in levels NRF2 activity protects cancer cells Ash Alizadeh of circulating tumor DNA (ctDNA) and within the spheroid that are deprived Ludwig Stanford levels of circulating cytotoxic T cells. of contact with the extracellular matrix DIREct-On benefits from the noninvasive from a type of programmed cell death measurement of biomarkers not only known as ferroptosis, which is mediated before but during treatment as well. by ROS. But when cells lack NRF2, a In preliminary studies, it accurately critical suppressor of ferroptosis, GPX4, predicted progression-free survival and related proteins are expressed at from blood samples collected after one high levels. Joan and her team show that treatment cycle and was more precise inhibiting both NRF2 and GPX4 leads to than use of any of the three variables the death of cancer spheroids. The results alone. Combining all three resulted in reveal a vulnerability in tumors dependent the prediction of durable clinical benefit on NRF2 hyperactivation that might be with a sensitivity of 94% and specificity targeted for the development of novel Maximilian Diehn of 89%. DIREct-On could help physicians cancer therapies. Ludwig Stanford quickly determine whether anti-PD-1 immunotherapy should be continued, modified or stopped. 16
News roundup Clinical trials CARTS OF MICE GOING VIRAL Chimeric antigen-receptor (CAR)-T Targovax, a company developing cell therapy involves taking a patient’s immune activators for combination peripheral blood T cells and engineering therapy in solid tumors, completed them with a receptor that redirects part 1 of its two-part, open label phase them to attack their tumor. Though such 1 trial evaluating the combination of therapies have been approved for blood the oncolytic virus ONCOS-102 and the cancers, their application to solid tumors checkpoint blockade durvalumab, a PD- has proved challenging, in part because L1 inhibitor, for colorectal cancer (CRC) the microenvironments of solid tumors Melita Irving and platinum-resistant ovarian cancer suppress immune responses. Meanwhile, Ludwig Lausanne that has spread to the peritoneum—the due to technical difficulties associated membrane that lines the inner wall of the with developing mouse CAR-T cells, abdomen. ONCOS-102 is an experimental new CAR therapies have typically been cancer therapy comprised of an preclinically evaluated using human CAR-T engineered adenovirus that replicates LUDWIG LINK | APRIL 2021 cells in mice that lack an immune system. specifically inside cancer cells, leaving The CAR-T cells are thus not challenged healthy cells unharmed. The trial met in the context of inhibitory immune the pre-defined efficacy threshold infiltrates in tumors. In November, Ludwig in the CRC cohort at week 24 and the Lausanne’s Melita Irving, George Coukos, second part of the CRC expansion Evripidis Lanitis and colleagues reported cohort is now open for recruitment. The in the Journal of Experimental Medicine treatment did not meet that threshold a method to overcome that difficulty George Coukos for the ovarian cancer cohort, which involving, among other things, the Ludwig Lausanne is now closed. The trial was designed sequential use of three immune factors with a dose-escalation phase assessing known as interleukins (IL-2, 7 and 15) in three different dosing levels, followed the cultivation of mouse CAR-T cells. The by an expansion phase. The study team also developed “4th generation” (4G) is sponsored by Ludwig and led by CAR-T cells engineered to co-express Ludwig MSK’s Dmitriy Zamarin. CRC is the IL-15 protein, which stimulates T cell a challenging disease to treat, with a proliferation and survival, and showed response rate to immune checkpoint that their CAR-T cells were superior in inhibitor monotherapy of less than 5%. persistence, fitness and efficacy in a The researchers are betting immune mouse model of melanoma. Notably, the activation by ONCOS-102 will sensitize 4G CAR-T cells reprogramed the tumor these tumors to immune checkpoint microenvironment by activating tumor- Evripidis Lanitis inhibition and improve the response targeting natural killer cells and causing Ludwig Lausanne rate. a decline in M2 macrophages that can suppress anti-cancer responses. 17
Q&A LANA KANDALAFT ASSOCIATE DIRECTOR OF CLINICAL TRANSLATION, LUDWIG LAUSANNE Can you tell us about what excites you most in your work right now? We’re pretty unique here at the Ludwig Lausanne Branch, in that there are not many translational programs around the world like ours. I have an amazing team to LUDWIG LINK | APRIL 2021 work with in developing cancer vaccines and other immunotherapy products for our patients. And right now, we are in an excellent position to deliver some innovative products to them. Our work is very gratifying because we are able to see our technologies being implemented in clinical protocols and witness first-hand how a treatment is working and whether it is benefitting an individual patient. You’ve done a lot of research on ovarian cancer. How optimistic are you about near-term opportunities for immunotherapy treatments for this kind of cancer? While we don’t have immunotherapy for better response. Chemotherapy and PARP ovarian cancer as yet, we have a lot of inhibitors are viable combination partners promising leads. I think the challenge is for immunotherapy and combining going to be defining exactly which patients checkpoint inhibition with other drugs may get the best results from different may lead to some new options for approaches. There are a couple of studies patients. But none of these combinations out whose results are encouraging and are standard of care right now. Now indicate we need combination therapies the more that we understand the tumor along with chemotherapy to produce a microenvironment and its influence on a 18
Q&A handle. Number two, in order to ramp up production, you have to have the infrastructure to actually manufacture It’s a different ballgame when you interact with these products. Producing them and getting them to patients is complex patients and their husbands or mothers or sisters ... and very challenging. While it took us part of my attachment to ovarian cancer stems quite a few years to build, the Center of Experimental Therapeutics (CTE) has from my personal experience with patients. two GMP manufacturing facilities: the Tumor Processing Facility and the Cellular Manufacturing Facility. Just as CAR T-cell therapy has been approved for standard of care for some cancers, I believe these patient’s response to therapy, the more new immunotherapies will be as well. we’ll be able to understand how various And third, once we’ve developed these combination therapies work and which therapies there are some big questions LUDWIG LINK | APRIL 2021 ones might work best. to answer. How will the world adapt? Will pharma make use of all the good My interest is in vaccines, and I have a technology we’ve developed and run with paper out right now with my colleagues it? Will every hospital in every country here Alexandre Harari and Cheryl Chiang and in every city have the infrastructure at the Ludwig Lausanne Branch on a in-house to treat its patients? Will these personalized cancer vaccine strategy therapies eventually become part of the that recognizes the importance of T cells standard of care? We have a lot of hurdles for controlling ovarian cancer. Some to overcome, but I’m confident they are all interesting early data have come out that doable. may lead us in directions that we want to go, but larger studies need to be done Given all these challenges, what is it to validate the findings. Vaccines are about ovarian cancer that drives you? not the cure, however. It’s my hope that It’s what’s called the silent killer because they will eventually be integrated into the it’s a very tough cancer to detect and by standard of care, but they will not be the the time a woman receives a diagnosis, definitive cure for ovarian cancer. the disease is quite advanced, at either Stage III or IV. I started working on it at the What worries you the most about Ovarian Cancer Research Center at the developing these therapies? University of Pennsylvania with George First of all, they are difficult to develop, Coukos and found it very challenging to and the difficulty is the technology— treat. The disease landscape is such that choosing the right antigen, choosing the cancer bounces back in 85% of women the right TCR (T cell receptor). The who undergo the standard of care, which is T cells themselves are difficult to surgery followed by chemotherapy. I think 19
Q&A there is a watchful waiting period with this disease where a vaccine could be given to women in remission to prevent recurrence. But it might have been my exposure to patients when I was at Penn that changed my mentality and the way I approach this disease. It’s a different ballgame when you interact with patients and their husbands or mothers or sisters or other close relatives. And I think part of my attachment to ovarian cancer stems from my personal experience with patients, many of whom have become friends. Can you tell us what you find most LUDWIG LINK | APRIL 2021 Lana with Ludwig Lausanne’s Alexandre Harari, left, and Director George Coukos. stimulating about the research environment at Ludwig Lausanne? At Ludwig we are really very lucky. The leadership has set a specific direction operation focused on vaccines. It was for the organization, and everyone on the difficult because we didn’t have a Good team has a shared sense of purpose, and Manufacturing Practice (GMP) facility we are all working towards one goal. Or, and had to outsource everything. Here as I like to say, we’re all drumming to the in Lausanne, we built a department same beat. Our focus is on translational that has it all. We’re one of the largest science—primarily tumor immunology immunotherapy centers in Europe, and and the design and development of we have it all right here—the researchers, novel immunotherapies. I admit it can be the doctors and the patients. Within the daunting in terms of career development CHUV’s Department of Oncology, we because not every member can become created the CTE, which I run with a staff their own PI or have their own lab or run of 140. We have a clinical investigation their own Branch. But at the end of the unit to run our clinical trials and two day, we’re all working on something that GMP manufacturing facilities for cancer will eventually get to our patients and immunotherapies. Without these hopefully make a difference. resources, we could not have achieved what we are achieving right now. What has it enabled you to do that you could not do previously? Your training has been very international. Prior to coming here, I worked with George What perspective does that provide for at Penn developing immune therapies for you? ovarian cancer patients. It was a small That you can be whoever you want to 20
Q&A I lack the time right now to even think about using social media. I would need the support of a very good communications team to even start. What would our readers be surprised to know about you? I’m aware that people perceive me as a workaholic, and I know they think that I have no private life. But I do. I am a mother with two amazing boys. I’m a very good cook and have even mastered a Lebanese lamb dish that my dad said was even better than my mother’s. Music is a big part of my life. I wrote my entire PhD thesis to Jon Bon Jovi’s music— LUDWIG LINK | APRIL 2021 Lana with Ludwig Lausanne Director George Coukos. played very loud. And since moving to Switzerland, I have fallen in love with the mountains and ski touring. It’s my new be wherever you are. It doesn’t matter passion. Exhausting, but so beautiful. if you’re in India, Spain, the U.S. or Switzerland. All it takes is the right Would you share a story that led to you mindset and the right attitude. Every new choosing your field of work? venue presents a different challenge. It was in Cardiff, Wales, where I was Each institution has a lot to offer. You working on my PhD in pharmaceutical have to adapt, as each has its own mission drug delivery. I had just started a course and its own way of doing things. There in pharmaceutical biology that was are new languages to learn, new cultures interesting, but I couldn’t see a real-world to embrace and new techniques to learn. application. One evening when I was But since I left home at such a young age, sitting at the bench next to my computer, I was able to adapt quite easily and absorb I came across a paper written by Doug everything around me like a sponge. And Hanahan and Bob Weinberg entitled The bottom line, science is science, whether Hallmarks of Cancer. I said to myself, “Ah, you are working in the U.S. or Switzerland. Lana, this is what you need to do. You need to deliver drugs to cancer. This is what you What is the most effective/best way for must do.” So I immediately started looking scientists to use social media to engage, into postdoc opportunities at the National communicate and interact? Cancer Institute in Bethesda. That was Honestly, I don’t know. It’s very important a turning point in my life. When I came to communicate about your work and to Lausanne in 2012, and first saw Doug share it with others, but I have to admit Hanahan, I was so excited and thrilled to 21
Q&A actually meet him that I know my face turned completely red. I kept saying to myself, Doug Hanahan is here, and it was his amazing paper that really touched me Since I left home at such a young age, I was able to and changed my life. adapt quite easily and absorb everything around me When you’re not wearing your many like a sponge. And bottom line, science is science, science hats, what other activities are you involved in? whether you are working in the U.S. or Switzerland. I’m at a stage in my life where my role as a mother has changed. I have a different connection with my two sons, who are now 10 and five years old, than I did when they were younger. While I encourage them to be independent, they will often matter whether you are male or female, bike alongside me when I run. I still play everyone is working towards the same LUDWIG LINK | APRIL 2021 a lot of tennis and in winter we ski a lot goal. Here at the CHUV, women are well on the weekends. Opera is not my thing, represented as 69% of the employees sports are. And I watch a lot of movies are female, and many are in leadership with the boys and, of course, listen to positions. music. My role as a mentor is very important to What kind of music do you listen to? me, and I often wish I had more time to I’m into French rap because it’s what my devote to it. I am often approached by kids are listening to, and I want to be cool. young women who want to know how I I also listen to a lot of oldies because was able to achieve what I did, what my growing up, my dad was always playing life is like, and ask whether a life outside them. But it’s definitely the music from the lab possible. Mentoring the younger the 80’s that gets me pumped up. It’s great generation is key to helping them reach music to run to. the next level. I had one very talented female postdoc who came to work for There has been a lot of discussion in the me and over the years received a number media lately about women in science. of promotions, and ultimately became What has been your experience as a a key member in our department here female scientist? How do you see your at the CHUV. She now works in the role in helping to mentor women? pharmaceutical industry. One day, she Again, I have been very lucky in that I have came to me and said, “Lana, you didn’t just always worked in an environment where give me a job, you gave me a career.” That the leadership has been nothing but touched me deeply and reinforced how supportive of women. The field of science important it is to mentor and inspire the is challenging as it is, and it doesn’t really next generation. 22
Ask a scientist How has the pandemic changed your perspective on balancing your work and personal life? Prior to the pandemic, I had a system and support structure that allowed me to balance my work in the lab and the clinic with caring for and spending good time with my husband and our four children. That system of balance disappeared when the pandemic hit and schools shut down. My husband (who is also in academic medicine) and I have been doing 100% work and 100% childcare at the same time, all the time it seems. To cope with this new unbalanced reality, I have been learning to say “no” more to work commitments, to reset my expectations of what I can accomplish every day, and to seek and cherish those rare quiet and un-interrupted moments when I can think creatively about LUDWIG LINK | APRIL 2021 an experiment or write a paper. It has been hard. But the extra time with my children and a chance to take a break from frequent academic travel has been really wonderful, and my ability to multi-task has improved to a new level. MICHELLE MONJE DEISSEROTH Ludwig Stanford Prior to the pandemic, research was the center of my life, and I had to travel frequently for scientific meetings. I see now that my mindset was not sustainable, especially on maintaining my personal life, as well as supporting the development of my lab members. After the shocking experience and a ‘valuable’ reset happened in 2020, I realize that work-life balance is key to sustaining my research motivation and appreciate the fact that everyone in my lab is heading to our goal in their own way. Although this pandemic is sad in many ways, I do feel that it brings positive changes for our research and training culture. PING-CHIH HO Ludwig Lausanne 23
Ask a scientist This pandemic has brought a general sense of uncertainty and disorientation. The possibility to go to conferences and build a good network is still missing, and I fear this will have a negative impact on my career. However, I will do my best and fight to keep my research and progress going even in this tough period. FRANCESCA ALFEI Ludwig Lausanne With hours limited by the shift system, I have found I am able to achieve more than I expected by being more efficient, whilst the extra time at home has highlighted the indispensable nature of interests outside of work. I have also learned not to worry about things that you have no control over. LUDWIG LINK | APRIL 2021 MICHAEL McCLELLAN Ludwig Oxford For me, the pandemic has emphasized the importance of having firm boundaries between work and personal time. Home-schooling whilst in a lab meeting, responding to emails whilst shushing a crying baby, cramming in lab time then rushing home for childcare, etc. This is not conducive either to good research or to good parenting. In the future I will be very grateful to work and to parent at separate times and with my full focus. ALICE NEAL Ludwig Oxford I’ve realized that achieving a work-life balance is not just a worthwhile goal— it is vital for mental and physical health and future success. I’ve learned that mastery of work-life balance comes down to how well we can prioritize the aspects of our lives that we most enjoy, whether professional or personal. SEAN PITRODA Ludwig Chicago 24
Required reading Cancer Cell Ludwig Chicago Ludwig Lausanne Ludwig MSK 2020 December 7 Journal of Journal of Cell Reports Online ahead of print Experimental Medicine Experimental Medicine 2021 January 12 Arsenic Trioxide Rescues 2021 January 26 2020 November 6 Targeting phosphatidylserine Structural p53 Mutations Suppression of local type I Optimized gene engineering enhances the anti-tumor through a Cryptic Allosteric Site. interferon by gut microbiota- of murine CAR-T cells reveals response to tumor-directed Chen S, Wu JL, Liang Y, Tang YG, derived butyrate impairs the beneficial effects of IL-15 radiation therapy in a preclinical Song HX, Wu LL, Xing YF, Yan N, antitumor effects of ionizing coexpression. model of melanoma. Li YT, Wang ZY, Xiao SJ, Lu X, radiation. Lanitis E, Rota G, Kosti P, Ronet C, Budhu S, Giese R, Gupta A, Chen SJ, Lu M. Yang K, Hou Y, Zhang Y, Liang Spill A, Seijo B, Romero P, Dangaj Fitzgerald K, Zappasodi R, Schad H, Sharma A, Zheng W, Wang L, D, Coukos G, Irving M. S, Hirschhorn D, Campesato LF, Torres R, Tatebe K, Chmura SJ, De Henau O, Gigoux M, Liu C, Mazo Ludwig San Diego Pitroda SP, Gilbert JA, Fu YX, G, Deng L, Barker CA, Wolchok Science 2021 January 1 Nature Immunology Weichselbaum RR. JD, Merghoub T. 2020 October 5 Online A tripartite mechanism ahead of print catalyzes Mad2-Cdc20 assembly Science Advances Journal of Experimental at unattached kinetochores. Disturbed mitochondrial 2020 October 2 Medicine dynamics in CD8+ TILs reinforce Lara-Gonzalez P; Kim T; Oegema 2020 December 29 Nanoscale metal-organic T cell exhaustion. K; Corbett K; Desai A frameworks for x-ray activated Nuclear receptor LXRβ controls Yu YR, Imrichova H, Wang H, Chao in situ cancer vaccination. fitness and functionality of T, Xiao Z, Gao M, Rincon-Restrepo LUDWIG LINK | APRIL 2021 activated T cells. Science 2020 December 17 Ni K, Lan G, Guo N, Culbert A, Luo M, Franco F, Genolet R, Cheng Online ahead of print T, Wu T, Weichselbaum RR, Lin W. WC, Jandus C, Coukos G, Jiang Michaels AJ, Campbell C, Bou- YF, Locasale JW, Zippelius A, Liu Puerto R, Rudensky AY. HSP70 chaperones RNA- PS, Tang L, Bock C, Vannini N, free TDP-43 into anisotropic Ho PC. intranuclear liquid spherical Ludwig Harvard Proceedings of the National shells. Academy of Sciences USA Nature Cancer Yu H, Lu S, Gasior K, Singh D, 2020 December 14 Epub 2020 December 14 Ludwig MIT Vazquez-Sanchez S, Tapia O, FXR mediates T cell-intrinsic Toprani D, Beccari MS, Yates Targeting immunosuppressive Molecular Cell responses to reduced feeding JR 3rd, Da Cruz S, Newby JM, macrophages overcomes PARP 2020 December 22 Online ahead during infection. Lafarga M, Gladfelter AS, Villa E, inhibitor resistance in BRCA1- of print associated triple-negative Campbell C, Marchildon F, Cleveland DW. breast cancer Increased demand for NAD+ Michaels AJ, Takemoto N, van der relative to ATP drives aerobic Veeken J, Schizas M, Pritykin Y, Mehta AK, Cheney EM, Guerriero Nature glycolysis. Leslie CS, Intlekofer AM, Cohen P, JL. 2020 December 23 Epub Luengo A, Li Z, Gui DY, Sullivan Rudensky AY. Chromothripsis drives the LB, Zagorulya M, Do BT, Ferreira Molecular Cell evolution of gene amplification R, Naamati A, Ali A, Lewis 2020 October 30 Epub CA, Thomas CJ, Spranger S, Ludwig Oxford in cancer. 3D Culture Models with CRISPR Matheson NJ, Vander Heiden MG. Nature Communications Shoshani O, Brunner SF, Yaeger Screens Reveal Hyperactive 2021 January 27 R, Ly P, Nechemia-Arbely Y, Kim NRF2 as a Prerequisite for DH, Fang R, Castillon GA, Yu M, Li Subtraction-free and bisulfite- Spheroid Formation via JSZ, Sun Y, Ellisman MH, Ren B, free specific sequencing of Regulation of Proliferation and Campbell PJ, Cleveland DW. 5-methylcytosine and its Ferroptosis. oxidized derivatives at base Takahashi N, Cho P, Selfors LM, resolution. Kuiken HJ, Kaul R, Fujiwara Liu Y, Hu Z, Cheng J, Siejka- T, Harris IS, Zhang T, Gygi SP, Zielińska P, Chen J, Inoue M, Brugge JS. Ahmed AA, Song CX. 25
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