ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...

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ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
ZN-c3 WEE1 Data Review KOL Event

           April 12, 2021
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
Forward-Looking Statements and Disclaimer
Zentalis Pharmaceuticals, Inc. (“we,” “us,” “our,” “Zentalis” or the “Company”) cautions that this presentation (including oral commentary that accompanies this presentation) contains forward-looking
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This presentation also contains estimates and other statistical data made by independent parties and by us relating to market size and other data about our industry. This data involves a number of
assumptions and limitations, and you are cautioned not to give undue weight to such data and estimates. In addition, projections, assumptions and estimates of our future performance and the future
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to the accuracy or completeness of that data or undertake to update such data after the date of this presentation.

Data of Fulvestrant, RAD1901, Abemaciclib, Alpelisib, AZD1775, Venetoclax and Osimertinib presented in this presentation is based on evaluation of comparable proxy chemical compounds purchased
from commercial sources rather than the pharmaceutical company commercializing or developing, as applicable, the compound.

 2
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
Broad Oncology Pipeline Designed to Improve Patient Outcomes
                                                                                                     IND Enabling                                    Phase 1/2                                     Phase 3                             Collaborator (1)
    ZN-c5: Oral SERD
                                                 Monotherapy
    Breast Cancer
                                                 Combinations

    ZN-c3: WEE1 Inhibitor
                                                 Monotherapy
    Solid Tumors
                                                 Combinations

    ZN-d5: BCL-2 Inhibitor
    AML or Non-Hodgkin’s
    Lymphoma                                     Monotherapy

    Breast Cancer                                Combination with ZN-c5

    ZN-e4: EGFR
    NSCLC
     (1)   Zentalis is currently evaluating ZN-c5 in combination with palbociclib (Ibrance®), as part of a clinical research collaboration with Pfizer, evaluating ZN-c5 in combination with abemaciclib (Verzenio®), as part of a clinical research
           collaboration with Lilly. Zentalis intends to evaluate ZN-c3 in combination with niraparib (ZEJULA®), as part of a clinical research collaboration with GlaxoSmithKline. Zentalis maintains full ownership of ZN-c5 and ZN-c3 in each
           such collaboration. SciClone has development and commercial rights to ZN-e4 in Greater China (including Macau and Hong Kong), South Korea, Taiwan and Vietnam. Zentera, our majority-owned joint venture, has development
3          and commercial rights to ZN-c5, ZN-c3 and ZN-d5 in select Asian countries (including China). Zentera submitted INDs in China for each of ZN-c5 and ZN-c3 and intends to submit an IND in China ZN-d5 in 2021.
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
ZN-c3: WEE1 Inhibitor

4
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
ZN-c3: A DNA Damage Response (DDR) Drug Candidate

                                                                                                               ZN-c3

• WEE1 is a protein kinase expressed at high levels in many cancer types that prevents entry into mitosis in response to
  DNA damage by regulating the G2 checkpoint
• WEE1 inhibition causes cancer cells to proceed to mitosis without repairing DNA damage, resulting in premature
  mitotic entry and apoptosis
• ZN-c3 has demonstrated significant growth inhibition and induced apoptosis in vitro and anti-tumor activity in vivo
5   Source: Drawing based on Targeting WEE1 Kinase in Cancer. Matheson CJ, et al. Trends Pharmacol Sci. 2016
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
WEE1 Inhibitors Show Strong Preclinical Activity and Clinical Responses
Combination of WEE1 and PARP                                         Phase II Study of WEE1 Inhibitor Plus                                                 Phase II Trial of WEE1 Inhibitor in
Inhibitors Showed Improved Anti-                                     Gemcitabine for Platinum-Refractory Recurrent                                         recurrent Uterine Serous
Tumor Activity Compared to the Use of                                Ovarian Cancer: Double-Blind, Randomized,                                             Carcinoma (USC) (3,4)
Each as Monotherapy (1)                                              Placebo-Controlled(2)

               AZD1775
               AZD1775
                              AZD1775
                              AZD1775

     (1) Fang, Y. Cancer Cell (2019). A total of 2 x 106 OVCAR8 ovarian cancer cells were injected subcutaneously (s.c.) and grown for 2 weeks in nude mice. Mice were randomized with six in
         each group and treated as indicated. Average tumor volume ± SEM are displayed. p value: one-way ANOVA. **p < 0.01
     (2) Lheureux S., Lancet (2021). Addition of a WEE1 to Gemcitabine shows a statistically significant improvement in mOS over Gemcitabine with placebo (HR=0.56, P=0.017)
     (3) Liu, J.F. AZD1775 SGO Presentation (2020)
 6   (4) An aggressive subtype of endometrial carcinoma characterized by frequent TP53 mutations (>90%)
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
ZN-c3: Excellent Potency, PK and Preclinical Activity
         ZN-c3 Anti-Proliferative Activity in a Panel of Cell Lines
Compound                                                     CTG IC50(nM)
   ID
                         NSCLC                    SCLC                           TNBC               Ovarian cancer cells    ZN-c3 Induced Prolonged Tumor Growth Delay
                NCI-H23      A-427      DMS-53            NCI-           MDA-            HCC        OVCAR3       UWB               A427 Human NSCLC Tumor Xenograft Model
                                                         H1048          MB-231           1806                    1.289
ZN-c3              124           88       118                92            190            95             69       54
                                                                                                                                                                            AZD1775
AZD1775(1)         108           94       130                97            233            94             124      57

        Improved Tumor Concentration in Preclinical Models
                      Study
                                                    ZN-c3                             AZD1775 (1)
                  (A-427 NSCLC)

          Dose
                                           20        40            80            20      40         80
          (mg/kg/day)

          Cmax (ng/mL)                    1,167     1,997         5,100      635        2,460   4,703
                                                                                                                                                                              ZN-c3
          Tmax (hr)                         1            1          1            1        1         1

          AUC0-24hr (ng.hr/mL)            4,863    17,088         39,722    1,494 6,313 13,408

          Tumor Conc. (ng/mL)             10.5      48.0           811      BQL(2)      BQL     6.95

             (1) AZD1775 data based on evaluation of comparable proxy chemical compound purchased from commercial sources
                 rather than obtained from the pharmaceutical company developing the compound.
             (2) BQL: Below Quantifiable Level
  7          Note: ZN-c3 has excellent thermodynamic solubility of 2132 µM (vs. 60 µM for AZD1775) based on internal data
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
ZN-c3: Differentiated Selectivity Profile in >470 Kinase Screening Panel
                                     AZD1775 (1)                                                                                                                   ZN-c3
                                                                       % Inhibition (@ 1µM)                                                                                                     % Inhibition (@ 1µM)
                                                                           90+ 13 kinases                                                                                                           90+ 5 kinases
                                                                           75-89 24 kinases                                                                                                         75-89 5 kinases

    (1) AZD1775 data based on evaluation of comparable proxy chemical compound purchased from commercial sources rather than obtained from the pharmaceutical company developing the compound
8   (2) Illustrations reproduced courtesy of Cell Signaling Technology, Inc. (www.cellsignal.com)
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
ZN-c3: Comprehensive Clinical Development Plan
Ongoing and Planned Clinical Programs                                   Overview
                 Phase 1                           Phase 2              • Initial Phase 1 monotherapy
                                                                          dose escalation data
                                                                          reported at AACR 2021
     Solid Tumors: Monotherapy Dose       Uterine Serous Carcinoma
                  Escalation               Monotherapy Ph 2 Study       • ZN-c3 was safe and well-
    Initial data presented at AACR 2021   Expected Initiation 3Q 2021     tolerated as a single agent
                                                                        • RP2D for ZN-c3 determined
           Ovarian Cancer
    Chemo Combination Ph 1b Study                                       • ZN-c3 showed Exceptional
          Initiated 4Q 2020               Additional Clinical Studies     Responses in heavily
                                                                          pretreated subjects with
             Osteosarcoma                                                 advanced solid tumors
    ZN-c3 + gemcitabine Ph 1/2 Study
      Expected Initiation 3Q 2021                                       • Corresponding studies with
                                                  Monotherapy Study       Zentera in Greater China
             Ovarian Cancer                       Combination Study
      ZN-c3 + niraparib Ph 1/2 Study
       Expected Initiation 2H 2021

9
ZN-c3 WEE1 Data Review KOL Event - April 12, 2021 - Zentalis ...
Initial Results of ZN-c3 Phase 1 Monotherapy
                   Dose Escalation Trial

10
ZN-c3 Study: Schema and Endpoints

                       Dose Escalation                                            Dose Expansion

                       Dose escalation of                                         Dose Expansion in
                         ZN-c3 QD plus                  MTD/RP2D                subjects with Uterine
     Subjects with
     Solid Tumors
                     1 - 2 additional dosing                                   Serous Carcinoma (USC)
                            schedules                                          or Mutations of Interest
                         (N = up to ~70)                                           (N = up to ~40)

                        Study Objectives include:
                           • Safety and tolerability of ZN-c3, determination of maximum tolerated dose
                             (MTD) based on a CRM model, and recommended Phase 2 dose (RP2D)
                           • Clinical activity according to RECIST v 1.1: ORR, DOR, PFS, CBR
                           • Plasma pharmacokinetics (PK) of ZN-c3
                           • Evaluation of exploratory biomarkers
11
ZN-c3 Study: Inclusion / Exclusion Criteria

Key Inclusion:
• Subjects must have a solid tumor with advanced or metastatic disease, refractory to standard
  therapy or for whom no standard therapy is available, or the subject is ineligible for standard
  therapy
• Eastern Cooperative Oncology Group (ECOG) performance status ≤2
• Measurable or evaluable disease per RECIST version 1.1

Key Exclusion:
• Major surgery within 28 days, radiation therapy within 21 days, stem cell transplant within 3
  months, or serious illness/medical condition
• Hypersensitivity to any drugs similar to ZN-c3, or prior therapy with a WEE1 inhibitor

 12
ZN-c3 Study: Dose Cohorts, Dose Frequency, Number of Subjects
Enrolled and Cancer Types (as of 02/12/2021)
             Dosing Cohorts, Gender and Cancer Type
ZN-c3 Dose in mg      Males    Females   Cancer Types (Primary)                 Dosing Cohorts, Frequency and # of Subjects
25 QD                   0        2       Lung (2)

50 QD                   1        1       Breast, Colon                                                     Median Prior Lines: 4 (1-18)

75 QD                                    Bladder, Breast (2), Colon (3),
(Expansion Cohort)      5        5       Endometrium, Gall Bladder, Pancreas,
                                         Prostate

100 QD                  3        1       Breast, Prostate (2), Testis

200 QD                                   Endometrial Serous Carcinoma,
                        1        2
                                         Rectum, Prostate

300 QD                                   Ampulla of Vater, Breast, Colon (2),
(Expansion Cohort)      6        6       Kidney, Lung, Ovary, Prostate (2),
                                         Retroperitoneum, Uterus (2)
175 BID                                  Ampullary Invasive, Breast, Colon,
                        2        4
                                         Ovary, Pancreas, Prostate

350 QD                                   Colon (2), Gastric (2), Pancreas,
                        3        3
                                         Uterus

400 QD                  2        1       Biliary Tract, Colon, Pancreas

450 QD                  3        1       Colon (2), Lung, Uterus
                                                                                                    RP2D
450 QD Ramp Up          1        2       Lung, Pancreas, Prostate
13
Monotherapy Responses for Representative Agents

                     Untargeted, All-Comer                                     Targeted

           • AZD1775 (WEE1 inhibitor)                            • Larotrectinib (Trk inhibitor)

           • Metastatic Solid Tumor study                        • Metastatic Solid Tumor study

           • N=21                                                • 8/8 PRs (100%) in NTRK fusion(3)

           • 2 PRs (9.5%)(1)                                     • Zero responses in 62 patients (0%)
             Responses only in BRCA mutants                        who were NTRK-

                     Average Expected                                Expected Response Rates
                  Response Rates = 6.5%(2)                                 = 18-78%(4)

     (1)   Do Kh et al. Journal of Clinical Oncology. 2015
     (2)   Chakiba C et al. Journal of Clinical Oncology. 2016
     (3)   Hong DS et al. Annals of Oncology. 2019
     (4)   Gyawali B et al. JNCCN. 2020
14
ZN-c3 Study: Initial Waterfall Plot (Updated 03/01/2021)
                                                            ZN-c3 Dose Escalation and Expansion Study
                                                   Best % Change in Target Lesion Size and Best Overall Response
                                                                 ≥300mg Dose Cohorts (N= 29 (1))
          80
                                                                                                                                                ≥300mg Cohorts N= 42
                                                                                                                                                 Measurable Disease: 37
          60                                                                                                                                     No scans, ongoing: 4
                                                                                                                                                 No scans due to withdrawn consent, Inv Dec: 4
                                                                                                                                                Median Prior Lines: 4 (1-18)
          40
                 PD       PD                                                                                                                    ORR evaluable = 29
                                  PD        PD                                                                                                   ORR: 5/29 (17%) [95%CI: 6%, 36%]
                                                  PD
          20                                             PD                                                                                     ORR evaluable (USC only subset) = 5(1)(3)
                                                                PD
                                                                        PD
                                                                              SD    SD+   CPD   PD
                                                                                                      Inv Dec   SD       PD                                                     USC     USC NSCLC(2) CRC (2) Ovarian (2)
                                                                                                                                   CRC   CRC   LeiomyoS   CRC   LeiomyS   CRC
           0   Pancreas Prostate Pancreas   CRC   SCLC   RCC   Breast   CRC   CRC   USC   CRC   USC    NSCLC    Gastric Pancreas
                                                                                                                                   PD    SD
                                                                                                                                                 SD
         -20
                                                                                                                                                          SD+
                                                                                                                                                                 SD+      PD

         -40
                                                                                                                                                                                 uPR+
                                                                                                                                                                                -43%    uPR+ cPR+
                                                                                                                                                                                                        cPR
         -60                                                                                                                                                                            -49% -50%
                                                                                                                                                                                                       -51%
                                                                                                                                                                                                               cPR+
                                                                                                                                                                                                               -65%
         -80

     (1) 3 subjects with no treatment scans (CRC, USC, Pancreas), and experienced clinical progressive disease (CPD). + denotes treatment ongoing
     (2) 3 confirmed Exceptional Responders PRs, including an additional confirmation of Exceptional Responder PR since AACR Presentation Press Release
15   (3) Updated as of 03/15/2021
ZN-c3 Study: Exceptional Responders on Single Agent ZN-c3
                                                       Initial Results from ZN-c3 Study
                      • Preliminary evidence of rapid, single agent clinical activity in heavily
                        pretreated patients generating Exceptional Responses
                      • PRs also in tumor types not expected with WEE1 monotherapy (e.g., non-USC
                        or BRCA1/2 WT patients)
                      • At the time of the data cutoff on March 1, 2021, 5 subjects with best overall
                        response of Partial Response (PR) by RECIST v1.1:
                           • 3 confirmed Exceptional Responder PRs(1) in multiple tumor types (ovarian
                             cancer, CRC, NSCLC)
                           • 2 unconfirmed PRs in USC
                      • RP2D 300mg QD with continuous dosing
                         Exceptional Responses were observed in non-USC patients who had
                        experienced up to 18 prior lines of treatment and no recent responses

16   (1) Additional confirmation of Exceptional Responder PR since AACR Presentation Press Release
Exceptional Responders: Who Are They?
     Who is an Exceptional Responder?                                               Characteristics of an
                                                                                   Exceptional Response

                                                                                     • Unexpected
                                                                                     • Rapid
                                                                                     • Durable

                                                                                  Exceptional Responses are generally
      "NCI selected those that fit specific criteria [for an Exceptional
                                                                                 observed randomly, and the underlying
      Responder]: The patient's tumors shrank or disappeared in response          driver of response is often unknown
      to a drug that worked for less than 10% of patients overall in a
      clinical trial. Or the patient had a response that lasted at least three
      times longer than it had for a typical patient."
                           - Harold Varmus, Weill Cornell Medicine

17
Exceptional Responders Exhibit Unique Biological Features
          Zentalis Predictive Biomarker Approach                        Confirming Biomarker Profile

                     Genomic Profiling
                     (Tissue and Liquid                           • Zentalis has observed, at this initial stage
                           Biopsy)                                  of the ZN-c3 study at the time of the
      Biology MOA                         Proteomics                data cutoff on March 1, 2021, multiple
                                                                    Exceptional Responses on single agent
CRISPR/Cas9 screen                                                  ZN-c3 (3/3 patients or 100% ORR)
                                            Expression data/IHC
                                                                  • Activity in tumor types (e.g., CRC) not
                                                                    previously seen by other WEE1 inhibitors

                   Unique and Predictive                          • In addition: Partial Responses seen in
                     Biomarker Profile                              USC patients
               •   Prospective Identification                     • Zentalis Predictive Biomarker approach
                   of “Exceptional Responders”                      used to confirm unique, novel and
               •   Addresses High Unmet Clinical
                   Need and Meaningful Patient
                                                                    predictive profile
                   Populations
               •   Indication Agnostic
               •   Straightforward Development of
                   Companion Diagnostic
 18
Summary of Relevant Genomic Backgrounds
                                                                                                                                                     CCNE1
                                                              TP53                                       BRCA1/2
                                                                                                                                                   amplification

                                                                                                                                                                Amp
                                                                                                                    MUT
                All subjects                         WT
                   (n=43)
                                                                      MUT                               WT                                             WT

                                                                                                                                                                 Amp
                 Partial
                                                             MUT                                              WT
              Responders (1)
                  (n=5)                                                                                                                                WT

19   (1) Includes 3 Exceptional Responder cPRs (one additional confirmation of Exceptional Responder PR since AACR Presentation Press Release) and 2 USC uPRs
Exceptional Responder #1: First PR seen in ≥3 lines
     Exceptional Responder #1 Summary
     • 63-year-old White male, Stage IV CRC, metastases to
       the liver, lymph nodes, and pleura. ECOG PS 1                  Previous Therapy Experience
     • Heavily pretreated with 5 prior lines of therapy (see                                                                                   Best
       table)                                                   Intent of        Regimen                Start               Stop
                                                                                                                                             response
                                                               Treatment
     • ZN-c3 starting dose: 450 mg QD on August 18th, 2020     Advanced /     Bev / 5FU / LV 20/Jun/2018 28/May/2019                         Unknown
                                                               Metastatic
         •   Dose reduced to 300 mg QD on D32 due to Gr 3
                                                               Advanced /      Irinotecan /  24/Jul/2019 31/Dec/2019                         Unknown
             neutropenia, then 200 mg QD (5/2) on D77 due
                                                               Metastatic     5FU / LV / Bev
             Gr 2 nausea, vomiting and Gr 1 diarrhea
                                                               Advanced /        MK0482      30/Jan/2020 12/Mar/2020                                PD
     • TP53 mutant. BRCA1/2 negative. CCNE1 amp negative       Metastatic
                                                               Advanced /       ABBV181 /          15/Apr/2020 13/May/2020                          PD
     • Duration on study: 169 days (5.6 months), off study     Metastatic        ABBV151                       27/May/2020
       now due to progressive disease
                                                               Advanced /       AGEN2373            1/Jul/2020  1/Jul/2020                          PD
                                                               Metastatic
         Confirmed PR with 51% reduction overall
                                                                     Bev: Bevacizumab, 5FU: Fluorouracil, LV: Leucovorin, PD: Progressive disease
                   (updated 03/01/21);                               AGEN2373: anti-CD137 AB, ABBV181: PD-1 inhibitor, ABBV151: GARP- TGF-β1 MAB
                 First PR seen in ≥3 lines

20
Exceptional Responder #1: Unexpected, Dramatic and Durable
Decrease of Tumor Marker within Weeks of First ZN-c3 Administration
                                        CEA Tumor Marker
                                                   Start of ZN-c3

                                                                    • CEA tumor marker typically
                                                                      used in CRC
                                                                    • Patient experienced rapid CEA
                                                                      decrease from 327 ng/mL at
        PD1i + Bispecific GARP-TGF-β1                                 baseline to
Exceptional Responder #1: Baseline and Follow-up Liver Imaging and
Tumor Markers with 51% Partial Response (Updated 03/01/21)

              Baseline: 07/30/2020   1st Assessment: 10/09/2020
22
Exceptional Responder #2: Experienced 18 prior lines and first
response seen in over two years with ZN-c3
      Exceptional Responder #2 Summary                               Intent of
                                                                    Treatment
                                                                                       Regimen            Start            Stop          Best
                                                                                                                                       Response
 • 72-year-old White female, Stage IV ovarian cancer, metastases     Adjuvant        Carboplatin /     8/Sep/2011      10/Nov/2011     Unknown
   to the pleura, peritoneum and retroperitoneum. ECOG PS 1                            Paclitaxel
                                                                     Adjuvant          Letrozole      27/Apr/2012      25/Oct/2013         PD
 • Heavily pretreated with 18 prior lines of therapy, 11 of which
   were in the advanced/metastatic setting (see table)               Adjuvant        Carboplatin /     7/Nov/2013      20/Feb/2014         SD
                                                                                       Paclitaxel
 • ZN-c3 starting dose: 175 mg BID on October 7th, 2020              Adjuvant        Carboplatin /    17/Apr/2014     29/May/2014      Unknown
     • Dose was reduced to 300 mg QD on D13 due to Gr 3                                  Taxol
        diarrhea and Gr 2 dehydration, further modified to 200       Adjuvant           Zejula        UNK/UNK/20       20/Jul/2014     Unknown
        mg QD (5/2) on D69 due to persistent Gr 1-2 dizziness                                             14
        Tolerating 5 days on 2 days off weekly                       Adjuvant          Arimidex       20/Mar/2015       5/Jun/2015     Unknown

 • CA-125 dropped from 610 kU/L at baseline to 125 kU/L within       Adjuvant          Aromasin      Total 18 Prior Lines14/Aug/2015
                                                                                                       13/Jun/2015                     Unknown
   4 weeks after first dose and normalized 3 weeks later             Advanced/
                                                                     Advanced       APG115   (MDM2
                                                                                       Paraplatin /  27/Feb/2019​
                                                                                                      8/Jan/2016       05/Aug/2019​–
                                                                                                                      23/Jun/2016       NASD​
                                                                                                                                            (not
                                                                    /Metastatic
                                                                      Metastatic           inh)
                                                                                        Avastin /                         UNK –        applicable)
 • TP53 mutant. BRCA1/2 negative. CCNE1 amp positive                                 / Pembrolizum
                                                                                         Gemzar                        28/Apr/2016
                                                                                            ab​
 • Duration on study. 186 days (6.2 months) and remains on           Advanced /
                                                                     Advanced
                                                                                         Avastin
                                                                                        ABBV-155​
                                                                                                      28/Jul/2016
                                                                                                     09/Sep/2019​
                                                                                                                       8/Sep/2016
                                                                                                                       09/Sep/2019​
                                                                                                                                           SD
                                                                                                                                           PD
                                                                     Metastatic
   study                                                            / Metastatic      (CD275 ADC)
                                                                     Advanced /         Avelumab     10/Nov/2016       16/Mar/2017         SD
                                                                     Advanced
                                                                     Metastatic          NC318​
                                                                                     (MSB0010718     16/Oct/2019​      23/Dec/2019​        SD​
       Confirmed PR with 65% reduction overall (updated             / Metastatic     (Siglec-15
                                                                                            C)  AB)
     03/01/21) with 18 prior lines and first response seen in         Advanced
                                                                      Advanced          SM08502​
                                                                                       Liposomal     13/Feb/2020​
                                                                                                     13/Apr/2017​       9/Apr/2020​
                                                                                                                       31/Aug/2017​        PD
                                                                                                                                           PD
                                                                    // Metastatic    (CLK inhibitor)
               over two years; Remains on study                        Metastatic      Doxorubicin​

23
Exceptional Responder #2: Unexpected, Dramatic and Durable
Decrease of Tumor Marker within Weeks of First ZN-c3 Administration

                               CA-125 Tumor Marker
                                                     Start of ZN-c3
               CLK inhibitor
                                                                      • CA-125 tumor marker typically
                                                                        used in ovarian cancer
                                                                      • CA-125 dropped from 610 kU/L
     Siglec-15 mAb                                                      at baseline to 125 kU/L within
                                                                        4 weeks after first dose
                                                                        and normalized 3 weeks later
                                                                      • Patient remains on study and
                                                                        tumor marker remains down

24
Exceptional Responder #2: Baseline and Follow-up Porta Hepatis
Lymph Node; Overall 65% Partial Response (Updated 03/01/21)

               Baseline: 09/22/2020   1st Assessment: 11/24/2020

25
Exceptional Responder #2: Baseline and Follow-up Pleural Lesion
with Complete Regression

               Baseline: 09/22/2020   1st Assessment: 11/24/2020

26
Exceptional Responder #3: No responses seen prior to ZN-c3

     Exceptional Responder #3 - Summary
                                                                        Previous Therapy Experience
 • 61-year-old White male, Stage IV NSCLC,                    Intent        Regimen​          Start​         Stop​        Best
   metastases to lung, liver, ECOG PS 0                   of Treatment​                                                 Response​

 • 3 prior lines of therapy in the advanced/metastatic    Neoadjuvant     Carboplatin/    27/Nov/2018    05/Feb/2019       SD
                                                                           Paclitaxel
   setting
                                                            Adjuvant​      Durvalumab​    UNK/Feb/2019   UNK/Jul/2019      PD
 • ZN-c3 starting dose: 350 mg QD on November     17th,
   2020, no dose reduction                                 Advanced       Carboplatin​/   UNK/Jul/2019    23/Oct/2019      PD
                                                          / Metastatic    Pemetrexed
 • TP53 mutant. BRCA1/2 negative. CCNE1 amp                Advanced       Atezolizumab    UNK/Jan/2020   UNK/Mar/2020      PD
   negative                                               / Metastatic
                                                           Advanced         Docetaxel     UNK/Apr/2020   20/Sep/2020​      PD
 • Duration on study: 145 days (4.8 months) and           / Metastatic
   remains on study

       Confirmed PR with 50% reduction overall at
           first evaluation; Remains on study

27
Exceptional Responder #3: Baseline and Follow-up Lung Mass
Imaging with 50% Partial Response

          Baseline: 11/10/2020         1st Assessment: 01/18/2021

28
USC Partial Response #1
      USC Partial Response #1 - Summary
                                                                       Previous Therapy Experience
     • 72-year-old, White female, Stage IV USC; metastases to
       peritoneum and lymph nodes, ECOG PS 1                     Intent of     Regimen          Start         Stop         Best
                                                                Treatment                                                Response
     • 1 prior line of therapy in the advanced/metastatic        Adjuvant     Carboplatin    10/Dec/2018   27/Mar/2019   Unknown
       setting                                                                / Paclitaxel
                                                                Advanced /    Paclitaxel /   06/Dec/2019   27/Mar/2020   Unknown
     • Starting dose: 350 mg QD on December 9th, 2020           Metastatic      Avastin
        • Dose reduced to 300 mg QD on D55 due to Gr 3          Maintenance     Avastin      24/Apr/2020   30/Oct/2020   Unknown
          fatigue
     • Tumor marker CA 125:
        • December 8th, 2020: 35.8 U/mL
        • February 10th, 2021: 16 U/mL
     • TP53 mutant. BRCA1/2 negative. CCNE1 amp negative
         Unconfirmed PR of 49%; Remains on Study

29
USC Partial Response #2
     USC Partial Response #2 - Summary
 • 69-year-old, African American female, Stage IV USC,
   metastases to lymph node and lung, ECOG PS 1                         Previous Therapy Experience
                                                            Intent of        Regimen             Start         Stop         Best
 • 4 prior lines of therapy in the advanced/metastatic     Treatment                                                      Response
   setting                                                 Advanced /   Carboplatin / Taxol   13/Sep/2019   22/Nov/2019     PD
                                                           Metastatic       / Avastin
 • Starting dose: 300 mg QD on January 13th, 2021
                                                           Advanced /      Trastuzumab        24/Feb/2020   07/Apr/2020     PD
     • Dose modified to 300 mg QD (5/2) on D44 due to Gr   Metastatic       (Herceptin)
       2 nausea                                            Advanced /    Pembrolizumab /      30/Apr/2020   21/May/2020     PD
                                                           Metastatic       Lenvatinib
     • Further reduced to 200 mg QD on D51 due to Gr 2
       fatigue, nausea and anorexia                        Advanced /      Doxorubicin        24/Jun/2020   12/Nov/2020     PD
                                                           Metastatic       Liposomal
 • Tumor marker CA-125:
     • Baseline: 440.4 U/mL
     • D63: 46.4 U/mL
 • TP53 mutant. BRCA1/2 negative. CCNE1 amp negative
      Unconfirmed PR of 43%, Remains on Study

30
RP2D Shows Highest AUC Between 25 mg and 400 mg Doses
                                      Interim Plasma Pharmacokinetics
                     20000
                                             Day1 (QD)
                                             Day15 (QD)                                   • Greater than dose proportional
     AUClast (ng•hr/mL)

                                             Day1 (BID)                                     exposure up to 450 mg (not
                     15000
                                             Day15 (BID)                                    plotted)
                                                                                          • 1.87 to 2.50-fold accumulation
                     10000                                                                  at 200-350 mg dose
                                                                                          • No additional increase of
                          5000                                                              exposure occurs beyond Day 15
                                                                                            (up to Cycle 6)
                                                                                          • ZN-c3 shows ~30% more
                             0
                                 0           100         200        300          400        exposure than AZD1775 300 mg
                                                                    RP2D                    dose(1)
                                                   Dose (mg)
                           25 & 50 mg: n=2         200 mg: n=3        400 mg: n=3
                           75 mg: n=10/8           300 mg: n=16/9     175 mg BID: n=7/5
                           100 mg: n=4             350 mg: n=10/9

31   (1) Cancer Chemotherapy and Pharmacology (2020) 86:97–108
Decreases in p-CDK1 Show Target Engagement for WEE1 Inhibition
                                                                                                                                1. CDK1 phosphorylation by WEE1
       Confirmation of WEE1i Target Engagement in Surrogate Tissue
     1. CDK1 phosphorylation (p-CDK1) is mediated by WEE1                                                                         ZN-c3                 WEE1
     2. Inhibition of WEE1 therefore will lead to inhibition of p-CDK1
     3. Skin biopsies were performed at baseline (C1D1) and on-
        treatment (C1D15) to verify p-CDK1 levels, and hence level of target                                                                       1.
                                                                                                                                       2. p-CDK1 inhibition
        engagement of WEE1
                                                                                   p-CDK1 = Brown Staining (subject with cPR)                      Y15
                                                                                                                                                         CDK1
3. Skin Biopsy
                                                         Basal       C1D1
                                                         epidermis

                                                                     C1D15

                              Hair bulb
                                                                             40x
                                                                                     -99%                        -100%
32    Source: Drawing adapted from Servier Medical Art                              Hair bulb                 Basal epidermis
PK/PD Correlation Shows Active Target Engagement at RP2D
                                                                   WEE1 Target Engagement

                                                      100
More WEE1 Target Engagement

                                                                                                                • Inhibition of p-CDK1
                                                       50                                                         demonstrates WEE1 target
                              p-CDK1 (% inhibition)

                                                                                                                  engagement
                                                        0                                                       • Increase in dose / drug
                                                                                                                  exposure directly relates to
                                                                                                                  WEE1 target engagement
                                                       -50
                                                                                     Average drug
                                                                                     exposure at RP2D           • Data supportive of RP2D
                                                      -100
                                                             0   5000    10000          15000           20000
                                                                        AUC0-24 hr (ng*h/mL)

                                                                   Higher Drug Exposure

                   33
Interim Adverse Events (≥3 events) of All Patients (as of 02/12/2021)
                                    Nausea      63.6                                    5.4             5.4                          49
                                  Diarrhea                43.6                            3.6         3.6                  32.7         N = 55
                                    Fatigue                41.8                         5.4             5.4           29
                                  Vomiting                        34.5                     1.8       1.8              29
                       Decreased appetite                                23.6              1.8            10.9
                                   Anemia                                        14.5   9         5.4 7.2
                               Constipation                                        10.9                7.2
                               Dehydration                                         10.9               5.4
                         Edema peripheral                                          10.9          0
                            Abdominal pain                                              9 1.8         5.4
                                  Dizziness                                             9             5.4
                              Hypertension                                              9 5.4      1.8
                  Platelet count decreased                                              9 3.6      3.6 7.2
         White blood cell count decreased                                               9 3.6      3.6 7.2
       Alanine aminotransferase increased              ALL AEs                         7.2 1.8 1.8 5.4            Related AEs
     Blood alkaline phosphatase increased                                              7.2 1.8      3.6
                                  Dyspnea                                              7.2 1.8     1.8
                       Hypophosphatemia                                                7.2          3.6
                               Hypotension                                             7.2 1.8     1.8
                                    Pyrexia                                            7.2       0                    All Grades (All AEs)
                         Weight decreased                                              7.2          3.6
                     Abdominal distension                                                5.4       1.8                All Grades (Related AEs)
                                    Ascites                                              5.4     0
                            Confusion state                                              5.4 1.8   1.8                Grade ≥ 3 (Related AEs)
                                 Headache                                                5.4        3.6
                 Hepatic enzyme increased                                                5.4 3.6    3.6               Grade ≥ 3 (All AEs)
               Neutrophil count decreased                                                5.4       1.8
                                Tumor pain                                               5.4     0
                                          -75            -50               -25                   0               25                50            75
34
Interim AEs (all events): ZN-c3 ≥300 mg versus Adavosertib 300 mg(1)

                                                                     N = 34                                                                                     N = 34
                                                           • ≥300 mg QD                                                                              • 300 mg QD for days
                                                             continuously for 21                                                                       1-5, then days 8-12
                                                             days of 21-day cycle                                                                      of 21-day cycle
                                                           • 6.3 grams dosed                                                                           (published)
                                                             in cycle                                                                                • 3.0 grams dosed
                                                                                                                                                       in cycle

                                                                                                       Adverse Events (%)
     Source: Liu JF et al. J Clin Oncol. 2021 Mar 11:JCO2003167
35   (1) Non-head-to-head comparison. Results of a head-to-head comparison may differ significantly from those set forth herein. In addition, because our Phase 1 clinical trial for ZN-c3 and
     the Adavosertib clinical trials were separate trials, differences between the results of the trials may not be statistically or clinically meaningful
ZN-c3 Exhibits Meaningfully Reduced Hematological Toxicities
                versus Adavosertib(1)
                                                                Chart Title TRAEs at ≥RP2D
                                              Interim Grade ≥3 Hematological
                35
                                                                                    32.3

                30

                25                23.5

                                             63% Less
                                                                                              91% Less                                                                                              Despite continuous
                20                                                                            Neutropenia
                                                                                                                                                                                                    dosing delivering twice
% of Subjects

                                             Anemia for
                                                                                              For ZN-c3
                                             ZN-c3
                                                                                                                                     14.6
                                                                                                                                                                                                    the drug load, ZN-c3
                15
                                                                                                                                                                                                    induces markedly less
                                                                                                                                               60% Less
                                                                                                                                               Thrombocytopenia                                     hematological toxicity
                10                               8.8                                                                                           For ZN-c3

                                                                                                                                                    5.8
                 5
                                                                                                   2.9

                 0
                                       Anemia                                         Neutropenia                                   Thrombocytopenia
                                                   Adavosertib 300mg Intermittent                  ZN-c3 ≥ 300mg QD Continuous
                     Source: Liu JF et al. J Clin Oncol. 2021 Mar 11:JCO2003167
                36   (1) Non-head-to-head comparison. Results of a head-to-head comparison may differ significantly from those set forth herein. In addition, because our Phase 1 clinical trial for ZN-c3
                     and the Adavosertib clinical trials were separate trials, differences between the results of the trials may not be statistically or clinically meaningful
Other ZN-c3 Studies

37
ZN-c3 Phase 2 Monotherapy Study in USC

     Overview of Uterine Serous Carcinoma (USC)                                                                         USC Represents High Unmet Medical Need
     • Type II endometrial cancer
                                                                                                                    Comprises 10% of Endometrial Cancers with Highest Mortality
     • Not hormonally mediated
                                                                                                                                              All Endometrial Cancer
     • Approx. 70% of USC present with Stage III or IV disease                                                                         New Cases and Deaths (2020 Estimated)
       at diagnosis                                                                                                     100%
                                                                                                                                                    All Other
     • Poor survival rates; only 30-50 %, even if confined to                                                                                      Endometrial
       uterus                                                                                                                                        Cancer        7,680

     • >90% of USCs have TP53 mutation                                                                                  50%
                                                                                                                                         59,058

     • Recurrence rates are 29-80% post-surgery
     • ~6k new cases and ~4.5k deaths in U.S. per year                                                                                                             4,910
                                                                                                                                         6,562        USC
     • Current standard of care: comprehensive surgery,                                                                  0%
                                                                                                                                       New Cases                  Deaths
       adjuvant chemotherapy and adjuvant vaginal cuff
       brachytherapy
                                                                                                                               Zentalis Initiating Phase 2 Monotherapy Trial for
                                                                                                                                          Patients with USC in 3Q 2021

38    Source: Gynecologic Oncology 115 (2009) 142-153, David Boruta et al.; National Cancer Institute, SEER 2020 Data
ZN-c3 + Gemcitabine: Novel Combination Approach for Osteosarcoma

                                                 ZN-c3 + Gemcitabine SJSA-1 Sarcoma Tumor Model                                                        Clinical Unmet Need in Osteosarcoma
                      3600                Vehicle control (1d off, 6d on) × 2 cycles
                                          ZN-c3 30 mg/kg (1d off, 6d on) × 2 cycles + qd × 3 days
                                          Gemcitabine 100 mg/kg qw × 3                                                                                 • Approximately 1,000 new cases in the US(1)
                      3000                ZN-c3 30 mg/kg (1d off, 6d on) × 2 cycles + qd × 5 days p.o. + Gemcitabine 100 mg/kg qw × 3 i.p.
                                                                                                                                                       • Up to 90% have sequence mutations or
                                                                                                                                                         structural variants in TP53 and are often
Tumor Volume (mm3)

                      2400
                                                                                                                                                         enriched in relapsed or refractory cases,
                                                                                                                                                         portending resistance to chemotherapy(2)
                      1800
                                                                                                                                                       • No significant advances over the last 10 plus
                                                                                                                                                         years(3)
                      1200
                                                                                                                                                       • Overall survival rate for patients with
                                                                                                                                                         metastatic or recurrent disease is
ZN-c3 + Zejula (niraparib) Collaboration with GSK

                                          Zentalis and GSK Collaboration Agreement

                                       • Announced April 12, 2021
                                       • Zentalis will evaluate the combination of
                                         WEE1 inhibition (ZN-c3) and PARP inhibition
                                         (niraparib) in patients with advanced
                                         epithelial ovarian cancer
                                       • ZN-c3’s tolerability profile shows promise for
                                         future combinations with niraparib and other
                                         drugs
                                       • Zentalis/Zentera retain full ownership of ZN-c3
                                       • Details of the study will be disclosed on
                                         www.clinicaltrials.gov

                                                    Initiating Phase 1b in 2H 2021

40
ZN-c3 Market Opportunities

41
Versatility of WEE1 Inhibition Could Unlock Large Addressable
  Populations Across Solid Tumors
                                                                Potential Market Opportunities for WEE1

                                                                                                                                        Combination
                                                                                                 Predictive                           Therapy Settings
                                                                                                 Biomarker
                                                                                                   Driven
                                           Orphan
                                                                                                  Settings
                                           Setting

Drug Setting                           Single Agent                                              Single Agent                            Combination

                                                                                        Biomarker Identified              PARP Related (Early, Adjuvant, Late Lines)
Representative                       Uterine Serous
                                                                                      “Exceptional Responders”        Chemo Related (Ovarian, NSCLC, CRC, Osteosarcoma)
Indication(s)                          Carcinoma
                                                                                         Across Tumor Types                      Novel Related (Undisclosed)

Response                                     ~30%                                                   50% plus                          Indication Specific
Expectations

Population
                                  ~6,500 (US Only)(1)                                 10,000 – 30,000 (US only)                             Large
Incidence(s)
   42   (1) Gynecologic Oncology 115 (2009) 142-153, David Boruta et al.; National Cancer Institute, SEER 2020 Data
ZN-c3 Summary
     • ZN-c3 has strong evidence for clinical activity: Exceptional Responders in heavily
       pretreated populations, as well as PRs in USC patients
     • ZN-c3 appeared safe and well-tolerated with a wide therapeutic window
     • Zentalis declared RP2D with continuous (not intermittent) dosing at 300 mg QD
     • Zentalis confirming Unique Predictive Biomarker for the Exceptional Responder patient
       population
     • ZN-c3 may offer treatment to diverse solid tumor indications:
                                AS SINGLE AGENT            IN COMBINATIONS
                            •   Uterine Serous         •   PARP Related
                                Carcinoma
                                                       •   Chemo Related
                            •   Exceptional
                                Responder Population   •   Novel Related

                                 ZN-c3 has the Potential to be
                           Best-in-Class WEE-1 Inhibitor in the Clinic
43
Questions?

44
Key Milestones
                                                                    Expected                                                                       Expected
                                 Event                                                                         Event
                                                                     Timing                                                                         Timing
     ZN-c5 (Oral SERD)                                                             ZN-d5 (BCL-2 Inhibitor)
     ✓   Phase 1 topline results from monotherapy dose              ◼ Achieved     ✓   IND Clearance                                               ◼ April ‘20
         escalation study                                             July ‘20
                                                                                   ✓   Initiate Phase 1 trial in AML and Non-Hodgkin’s Lymphoma    ◼ Achieved
     ✓   Initiate Phase 1b combination study with abemaciclib       ◼ Achieved
                                                                                                                                                     4Q ’20
         b                                                            4Q ‘20
     ◼ Phase 1 topline results from Window of Opportunity study                    ZN-e4 (EGFR Inhibitor)
                                                                    ◼ 1H 2021
                                                                                   ◼ Initial results from dose escalation study                    ◼ 2021
     ◼ Initiate Phase 2 monotherapy study                           ◼ 1H 2021
                                                                                   ◼ Evaluate potential for use in combinations for treatment of   ◼ 2021+
     ◼ Initiate Phase 2 combination study with palbociclib          ◼ 1H 2021        lung cancer
                                                                                                                                                   A
     ◼ Initiate Phase 1b combination study with ZN-d5               ◼ 2021
                                                                                   Integrated Discovery Engine
     ◼ Initiate Phase 2/3 monotherapy in earlier-stage patients     ◼ 2021   (1)
                                                                                   ◼ Submit 5th IND                                                ◼ 2021
     ZN-c3 (WEE1 Inhibitor)
                                                                                   Zentera
     ✓   Initiate Phase 1b combination dose escalation study with   ◼ Achieved
                                                                                   ◼ Submit ZN-c5 and ZN-c3 INDs in China                          ◼ Achieved
         chemotherapy in ovarian cancer              b                4Q ‘20       ✓                                                                 1Q ‘21
     ✓
     ◼ Phase 1 initial results from dose escalation study in        ◼ AACR
         advanced solid tumors                                        2021 a       ◼ Submit ZN-d5 INDs in China                                    ◼ 2021

     ◼ Initiate Phase 2 monotherapy in uterine serous carcinoma     ◼ 3Q 2021

     ◼ Initiate Phase 1/2 chemotherapy combo in osteosarcoma        ◼ 3Q 2021

45   ◼ Initiate Phase 1/2 niraparib combo in ovarian cancer         ◼ 2H 2021          ✓Achievements
Contact Us

      Anthony Sun, M.D.,   Melissa Epperly,
      CEO and Chairman     CFO
      asun@zentalis.com    mepperly@zentalis.com
      (212) 433-3780       (215) 290-7271

      Corporate Office     Science Center
      530 Seventh Ave      10835 Road to the Cure
      Suite 2201           Suite 205
      New York, NY 10018   San Diego, CA 92121

46
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