Modeling the distribution and movement intensity of Arabian Leopard Panthera pardus nimr in the Arabian Peninsula - Authorea
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Modeling the distribution and movement intensity of Arabian Leopard Panthera pardus nimr in the Arabian Peninsula M. Zafarul Islam1 , Alexander Gavashelishvili2 , Luka Kokiashvili3 , Ahmed al Boug1 , Abdullah as Shehri1 , A. Townsend Peterson4 , and Daniel Jiménez Garcı́a5 1 Prince Saud al Faisal Wildlife Research Center 2 ILIAUNI 3 Ilia State University 4 University of Kansas 5 Benemérita Universidad Autónoma de Puebla May 5, 2020 Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Abstract Aim: Our research attempts 1) to link the distribution and movement rate of critically endangered Arabian leopard (Panthera pardus nimr) to environmental variables varying in space and time, and 2) thus to identify environmental constraints and priority areas for the recovery of Arabian leopard. Location: The Arabian Peninsula. Methods: Generalized linear and additive models were used to fit leopard presence/absence locations to environmental variables. Movement rates between the modeled polygons of leopard presence were inferred and mapped using the isolation-by-resistance model, where probability values of the species distribution model were treated as those of conductance. Results: Currently Arabian leopard prefers to live and move in terrain that has high NDVI and is difficult for humans to reach. Main conclusions: Our results suggest that 1) Arabian leopard accumulated genetic and phenotypic differences from its conspecifics at a series of glacial maxima during the last glacial period in the Yemeni refugium, from where it expanded elsewhere in the Holocene warming following the expansion of suitable landscape types, (2) humans expanded too, eventually restricting the source populations of Arabian leopard to an area intersecting eastern Yemen and western Oman today, (3) Most of the survey effort to detect and ensure the survival of the leopard in the peninsula has taken place outside the polygons identified by our models as core areas for the species. Our models would serve as a tool for the management of the species in conservation efforts such as an Arabian Leopard and associated species conservation in western Arabia project. Keywords: Arabian leopard, Panthera pardus nimr, Arabian Peninsula, Distribution, Movement intensity, Source population, Corridors, the Yemeni refugium. INTRODUCTION As mentioned in ‘The Sixth Extinction: An Unnatural History’ the majority of threatened species experi- encing greatest threats due to human intervention and the way the mass extinction event is reaching across diverse ecosystems is alarming (Kolbert, 2014; Hilton-Tailor, 2000). Humans have persecuted large preda- tors for centuries, reducing their distributions and altering niches, species such as Arabian LeopardPanthera pardus nimr , Arabian Wolf Canis lupus arabs ,Striped Hyena Hyaena hyaena sultana and many others in Saudi Arabia and rest of the Arabian Peninsula. Around 100 years before Asian Lion Panthera leo persica and Asian CheetahAcinonyx jubatus venaticus were extinct from the region (Harrison, 1968; Schnitzler & Hermann, 2019; Harrison, 1983; Harrison and Bates, 1991). The removal of these top predators from much of the natural world has had diverse direct and indirect effects (Esteset al ., 2011). Some have been extermi- nated, most others occur as small populations with drastically reduced geographic ranges due to social and political disruption of carnivore conservation programs. 1
International Union for Conservation of Nature (IUCN) documents that out of nine species of leopards, five are listed as endangered or critically endangered (Breitenmoser et al ., 2010). The greatest challenge in today’s world is to restore those species, which are on the verge of extinction including the Arabian Leopard Panthera pardus nimr (Hemprich and Ehrenberg, 1833), which is one of the Arabia’s flagship predators and listed as Critically Endangered (Mallon et al ., 2008; Boug et al ., 2009; Islam et al., 2015; 2018). It has an estimated population of 100–250 across its entire range in the Arabian Peninsula (Spalton et al ., 2006; Spalton and Al Hikmani, 2014; Breitenmoser et al ., 2006; Islam et al ., 2015, 2018) and is also considered to be a genetically distinct subspecies (Mallonet al ., 2008). Known locally as Al nimr al-arabi , this leopard subspecies is small in size, well adapted to desert habitats and endemic to the Arabian Peninsula. It once occupied the mountainous rim of the Arabian Peninsula, albeit at low densities given the harsh environment and limited prey base. Historically, much of the leopard’s range was located within the Kingdom of Saudi Arabia; this has decreased by about 90% since the nineteenth century (Judas et al ., 2006; Boug et al., 2009, Islam et al ., 2018). In 1982 a live-leopard was seen in Wadi Hiswa in the Asir (Gasperetti et al ., 1985), while Nader (1989) reported on killings of leopards and the collection of leopard remains in the 1970s and 1980s and who mentioned that the cat would probably be confined to South-western Highlands in the Kingdom. From field surveys in Asir region (SW Highlands) Biquand (1990) mentioned the Arabian Leopard probably present although they made no sightings, while Nader (1996) reported a small population of the leopard still present in the Hijaz Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. (northwestern highlands) and also in South-west, although no live animal was reported. Recently a number of field surveys were carried in the western highlands of Saudi Arabia (Islam et al ., 2011, 2018) but not seen. Al Johny (2007) recorded 62 sites where leopard presence was likely in Saudi Arabia. The majority of these sites were checked between 2010 to 2017 and did not confirm of presence of the species, while one male was poisoned in February 2014 (Islam et al., 2018). From 1833 to 2018, there are records of more than 300 (live animals, pugmarks, carcasses, reports) in the entire region of Arabian Peninsula (Islam et al., 2018) and the population may have declined by over 90% since the beginning of the 19th century, with the population reaching its presently highly precarious status at the start of the 21st century. The population of Arabian Leopard in Oman is believed to be a significant breeding population especially in Dhofar mountains in the southern part of the country, where prey populations are healthiest (Stuart & Stuart, 2007). This is one of the important places in the Arabian Peninsula where a sizeable reserve (the 4,500 km2 Jabal Samhan Nature Reserve) provides excellent habitat for the leopard. Leopards were also sighted in the Musandam Peninsula (Spalton & Al-Hikmani, 2006). In Yemen, Arabian leopards used to occur in all mountainous areas especially south-western highlands and eastern highlands bordering Oman (Al Jumaily et al ., 2006). Sanborn & Hoogstraal (1953) reported that the species was rare but widespread while Harrison (1968) reports on several specimens of leopard from the mountains around Aden and Beihan. Obadi (1993) reports the killing of leopards during the late 1970s and early 1980s in the area of Lodar northeast of Aden. However, most capture records are from the area of Al Wada’a about 120 km north of the capital Sana where Lagrot & Lagrot (1999) also reported signs of leopard as well as captures. In subsequent years at least 10 wild caught leopards entered zoos in Sana’a or Ta’iz (Budd, 2003) and at least nine were reported to have come from the Al Wada’a area (EPAA, 2000; Mellon, 2009). Nowell & Jackson (1996) reported that there was a small population of 20 in 1970s in Negaev desert in Israel and 11 individuals were identified in the country, based on genetic analysis of 268 scats collected (Perez et al., 2006). One leopard was sighted in Sde Boker in 2007 and Granit (2016) reported that in 2010, a leopard was sighted in the northern Arabah and since then it is considered extinct from Israel (Granit, 2016). In Jordan, the last confirmed sighting of a leopard was in 1987 (Qarqaz and Baker, 2006). In the United Emirates, Harrison (1968) reports the presence of the Arabian leopard from Musandam mountain bordering Oman. Jongbloed (2001) reported that in 1986 one leopard was killed in the mountains 2
while in 1991 a male was caught alive near Masafi and in 1992 one was shot in Wadi Bih. Stuart & Stuart (1995) mention that around 20 leopards may be there in mountains that were confirmed from the tracks from field survey in 1995. In Ras alKhaimah in 1999 and 2000 found some signs of leopard but were not confirmed by camera-traps deployed at the same time (Llewellyn-Smith, 2002). Depletion of the leopard’s prey base and retributive killing are the greatest threats (Islam et al ., 2011; 2015; 2018; Islam and Boug, 2017). Excessive illegal hunting has greatly depleted key prey populations like the Nubian ibex (Capra nubiana ), Rock hyrax (Procavia capensis ), Arabian mountain gazelles (Gazella arabica ) and Arabian hare (Lepus capensis arabs ) (Al-Johny, 2007; Islam et al., 2018; Judas et al ., 2006). As a consequence, the leopard has become increasingly dependent upon domestic livestock for its subsistence, which in turn leads to violent retaliation by herders who lose animals. Moreover, there are some reports of the sale of furs and occasionally live animals sold in local markets in parts of the region, where leopard fat is valued by some local people for its perceived medicinal properties (Judas et al ., 2006). Habitat modelling for the Arabian Leopard is needed due to fragmented populations in the range states (Breitenmoser et al ., 2010) and it is one of the important tools for conservation planning (Rougetet al ., 2006; Beier et al ., 2008). The species habitat model can be used to infer movement corridors of the Arabian Leopard from its significant breeding population in Oman to other suitable areas in Yemen and Saudi Arabia. These corridors help the leopards, especially sub-adults to move distant areas in search of food, territory Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. and mate and that’s how the species’ gene flow phenomena occur (Haddad et al ., 2003; Dixon et al ., 2006; Roberts & Angermeir, 2007). Studies on population connectivity is one of the important ways to understand species movements, and becomes extremely indispensable to know the niches that also are helpful in maintaining genetic diversity and demographic exchange in regional populations (Fahrig, 2003; Crooks and Sanjayan, 2006; Cushman, 2006; Cushman et al., 2013). Studies show that species shift their geographic ranges in response to conservation threats that include human-wildlife conflicts and also climate change (Heller and Zavaleta, 2009). Species, especially large carnivores, which require large ranges to meet ecological and energetic needs are especially prone to to human-wildlife conflicts. Areas such as mountain regions of Arabian Peninsula, where human populations occupying remote areas, species survival disseminated and habitat is not protected at the extent that need to be. Maintaining connectivity across a wide landscape would help in expanding the existing network of protected areas, as suggested (Santini et al., 2016; Bruner et al., 2004; Schmidt-Soltau and Brockington, 2007). Since the species is surviving in largely unprotected areas, nevertheless, maintaining corridors across species region might complicate it as majority of the area is privately owned. Spear et al., (2005) and Cushman et al., (2012) documented that the predicted corridor network for many taxa depend on three important aspects: (1) the distribution and abundance of the species, (2) the dispersal and movement ability of the species and (3) the pattern of differential movement cost, or resistance, across the landscape. Based on these, we designed our studies with the objective to generate the distribution and movement intensity models of Arabian leopard. MATERIAL AND METHODS Study area is comprised of five major mountain ranges: 1) the south-western highlands in Saudi Arabia up to Yemen; 2) the Hijaz Mountain to the northwest of Saudi Arabia; 3) Highlands in Jordan, Israel and Palestine; and 4) Al Hajar mountains in Oman and United Arab Emirates & 5) Hijaz Mountain in Saudi Arabia. The South-western Highlands consists of well-developed Juniperus forest remains intact above 2,000 m and deciduous woodland, often characterized byAcacia , with many endemic plants (CEPF, 2012) along with deep valleys (wadis ). The SW Highlands is connected gradually with the NW mountains called Hijaz (2,100 m) along the Red Sea coast. This range includes Median Mountains in the extreme north-west of Saudi Arabia. In Israel and Palestine contains the central highlands with Mount Meron 1,208 m. East of central highlands lies the Jordan Rift Valley contains Jordan River and many lakes provide habitats to many animals and Arabian Leopard used to persists. Al Hajar Mountains and Musandam Peninsula form one 3
contiguous spread in northeastern Oman and the eastern United Arab Emirates. Jabal Dhofar is in western par to Oman is continuous mountain range to eastern Yemen where leopard population is still surviving. Modeling the species distribution: We explored the distribution of Arabian Leopard (Panthera pardus nimr ) as a function of various environmental variables (Table 1 ). The selection of variables was based on documented species–habitat associations in west and central Asia (Gavashelishvili and Lukarevskiy 2008). To model the distribution, presence and absence locations were fitted to the environmental variables. 96 locations where our camera traps failed to detect leopard from 2011 through 2015 were considered absences. Even though these cameras were deployed in many places of Saudi Arabia, where leopards had been recorded historically, none were camera-trapped during the study period. We used camera trap locations that were > 1,000 m from neighboring locations because the coarsest cell size in our analysis was 500 m (Table 1 ), and hence to avoid the repeated sampling of environmental variables in a grid of 500 × 500 m cells, the minimal distance will be SQRT(2 × 5002 ) = 707.1068 m. This spacing would reduce the effects of spatial autocorrelation as well. Thus, we obtained 44 absence locations. Presences were obtained by generating 44 random locations within the year-round ranges of leopard identified by other studies (Mazzolli, 2009; Spalton and Al Hikmani, 2014; Fig. 1 ). Generalized linear models (GLMs) and generalized additive models (GAMs) were used to fit leopard pre- sence/absence to environmental variables using the mgcv package (Wood, 2011) in R version 3.5.2. (R Core Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Team, 2018). We used GAMs because they are able to find nonlinear and non-monotonic relationships. GLMs and GAMs were fitted using a binomial family with a logit link function. For GAMs penalized thin plate regression splines were used to represent all the smooth terms. The restricted maximum likelihood (REML) estimation method was implemented to estimate the smoothing parameter because it is the most robust of the available GAM methods (Wood, 2011). Model and variable selection were performed by exploring all possible subsets of environmental variables, where pair-wise correlations between variables were less than 0.9. To get subsets of environmental variables, variable combinations were generated using the gtools package for R (Warnes et al., 2015). The predictive power of the models was evaluated through a 10-fold cross-validation. The cross-validation of many models was handled through R’s parallelization capabilities (Microsoft Corporation and Weston, 2017 & 2018). The best models were selected by the area under the receiver operating characteristic (ROC) curve (AUC). For the final decision we also checked concurvity between model terms and between each term and the rest of the model using the mgcv package. All gridded environmental layers (raster layers) reflecting the situation in 2018 were resampled to a resolution of 90m using the nearest neighbor assignment technique of QGIS Desktop 3.4.11-Madeira. We used this cell size to avoid missing the importance of environmental variables at the finest resolution of ˜90 × 90 m (Table 1 ) in our analysis. The best leopard distribution model was predicted to the raster layers using the raster package (Hijmans, 2016) in R version 3.5.2. Probabilities of leopard presence were dichotomized into presence and absence at the cutoff value that maximized the sum of sensitivity and specificity. Then we generated 1000 random points within the inferred presence polygons that represented vast hyper-arid almost barren areas where leopard populations have never been recorded, and using them as absences, ran the presence/absence analysis again in order to refine the species distribution model. Thus, we obtained two-step final model consisting of two models: (1) the first one ignoring the negative impact of hyper-arid low productivity areas on leopard distribution and (2) the second one considering the negative aridity impact. To map the final probability and presence/absence of leopard distribution, we multiplied probability maps and dichotomized maps, respectively. Also, we inferred and mapped movement rates between the inferred polygons of leopard presence using the isolation-by-resistance (IBR) model via the Circuitscape 4 software (McRae et al., 2013). IBR is based on the resistance distance that, as a predictor of movement impedance between populations, is likely to perform better than Euclidean or least-cost path-based distance measures (McRae, 2006). Unlike Euclidean and least-cost distances, the IBR algorithm assumes that a disperser does not have complete knowledge of the landscape being traversing and can use multiple paths to reach a destination. The program models 4
multiple random walk paths between populations across a resistance or conductance grid that is a raster map, wherein the value of each cell indicates the relative difficulty (or resistance) of moving through that cell. The program treats the raster map as an electrical circuit, where cells with finite resistances are converted to nodes, cells with infinite resistance (absolute barriers) are dropped, and adjacent cells with zero resistance are consolidated into a single node. In this electrical circuit, adjacent nodes are connected by resistors, with resistances equal to the mean of cell values between a pair of orthogonal neighbors, and the mean resistance multiplied by the square root of 2 between a pair of diagonal neighbors to reflect the greater distance between cell centers. By injecting 1 amp of current (by default) into each focal node (population) and using Kirchoff’s and Ohm’s laws, the program calculates effective resistances (i.e., resistance distances), current, and voltages that can then be related to ecological processes (e.g., individual movement and migration rate). The current through nodes or resistors can be ecologically interpreted as expected net movement probabilities (i.e., movement rates) for random walkers moving through a heterogeneous landscape. We used probability values of our final distribution model as those of conductance in the IBR algorithm. Table 1 .—Variables used for modeling the distribution of Arabian Leopard (Panthera pardus nimr ). Variable Description presence Leopard present or absent elev SRTM elevation grid of 90-m cells (Jarvis et al., 2008) Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Slope tan Tangent of slope (°) calculated from a SRTM elevation grid of 90-m cells (Jarvis et al., 2008) TRI Terrain Ruggedness Index, calculated in a rectangular neighborhood of 1x1 km using QGIS Desktop 3.4.11-Ma cd Slope-weighted cost distance from human roads and settlements as a proxy for human disturbance, calculated ndvi min Annual minimum of normalized difference vegetation index of a 16-day interval as a proxy for food, water and ndvi max Annual maximum of normalized difference vegetation index of a 16-day interval as a proxy for food, water and ndvi mean Annual mean of normalized difference vegetation index of a 16-day interval as a proxy for food, water and cove ndvi med Annual median of normalized difference vegetation index of a 16-day interval as a proxy for food, water and co SNOW Annual sum of snow cover 8-day intervals as a proxy for movement impedance, extracted from 500-m MODIS * Obtained from https://search.earthdata.nasa.gov/search. At every presence/absence location, values of the remotely sensed variables were measured for those date ranges in which the location was monitored. 5
Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Fig. 1 .—The locations used for modeling the distribution of Arabian Leopard (Panthera pardus nimr ). The map is projected to Albers Equal Area Conic; WGS: 1984; central meridian: 47.03187; standard parallel 1: 20.85766; standard parallel 2: 29.12067; latitude of origin: 24.98916. We validated the leopard presence probability and movement intensity models, using confirmed records of leopard presence locations dated from 1881 until 2018 (supplementary material: Arabian Leopard points - Albers.csv). These records included a total of 321 locations, of which we selected those with a location accuracy of < 100 m – that is, 256 locations. We divided these relatively accurate locations into 10-year intervals starting with 2008-2018. Then values of our models measured at these locations were compared across the periods using ANOVA and TukeyHSD (Tukey Honest Significant Differences). The logic behind this validation procedure was that if our models truly explained leopard distribution and movement intensity, then their values were to be greater for a period that was closer in time to that of our study. This was expected because environmental variables – distance from human presence to much greater extent than other ones – were spatially rather different farther back in time from our study period. For instance, human settlements, especially vehicular access roads, were much fewer farther in the past. Initial analyses to derive distribution 6
models using either all or various subsets of these 256 locations via both presence-only and presence/absence methods showed much poorer results than those based on our training presence/absence locations. The initial models were too optimistic about the species distribution in the Arabian Peninsula. This is probably because the 256 locations were widely spread in time, and included many of those of vagrant and dispersing leopards whose locations were not really limited by the environmental variables that we used in our analyses. That’s why we used these locations to test rather than develop our models. RESULTS GLMs performed better than GAMs. The first step of our analysis suggested that slope-weighted cost distance from human roads and settlements alone best explained the leopard distribution, while the variables best explaining the leopard distribution in the second step were annual maximum of normalized difference vegetation index and terrain ruggedness index (Table 2 ). The response was positive to all three variables (Fig. 2 and Fig.3 ). The projection of the first model to the entire Arabian Peninsula misclassified large hyper-arid areas as leopard presence (Fig. 4 ). Rerunning the analysis on absence points generated randomly within these hyper-arid areas removed those areas (Fig. 5 ). Combining these two models by multiplying them produced the final model that showed quite a realistic picture of current leopard distribution in the region (Fig. 6 ). The final model suggested that the least fragmented habitat was in an area intersecting eastern Yemen and western Oman. This area included top 7 largest neighboring polygons. During our study Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. period all breeding leopards were recorded within or near these polygons. So, we considered these polygons as source populations and the others as sink populations in our next analysis in order to infer migration intensity between these populations (Fig. 7 ). Values of our inferred leopard presence probability and movement intensity at leopard presence records dating from 1881 until 2018 were significantly greater for the period of 2008-2018 – i.e., the period that contained that of our study (Fig. 8 ). Table 2 .—Summary of the best generalized Linear models (GLM) of leopard presence/absence fitted to environmental variables. GLMs are fitted using a binomial family with a logit link function. See Table 1 for descriptions of variables. Step n Variables Parameter P-value AUC Cutoff Overall estimate Accuracy 1 88 cd 0.006965 7.87e-06 0.936 0.712 0.83 Intercept -4.02119 2.74e-06 2 1044 ndvi max 0.01062 6.82e-06 0.996 0.434 0.994 TRI 0.03909 0.0063 Intercept -23.6521 5.16e-07 7
Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Fig. 2 .— GLM-fitted relationship of leopard presence with slope-weighted cost distance from human roads and settlements (cd). The gray band shows the 95% confidence interval. The distribution of the explanatory variable by leopard presence/absence categories is shown on horizontal axes. The plot is made using the visreg package (Breheny and Burchett, 2017). Fig. 3 .— GLM-fitted relationships of leopard presence with annual maximum of normalized difference vegetation index (ndvi max) and Terrain Ruggedness Index (TRI). The gray bands show the 95% confidence interval.The distribution of the explanatory variables by leopard presence/absence categories is shown on horizontal axes. The plots are made using the visreg package (Breheny and Burchett, 2017). 8
Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Fig. 4 .— Modeled distribution of Arabian Leopard (Panthera pardus nimr ) constrained by human dis- turbance. Black points are generated randomly within polygons misclassified as those of leopard presence, and used to refine the species distribution model. The map is projected to Albers Equal Area Conic; WGS: 1984; central meridian: 47.03187; standard parallel 1: 20.85766; standard parallel 2: 29.12067; latitude of origin: 24.98916. 9
Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Fig. 5 .— Modeled distribution of Arabian Leopard (Panthera pardus nimr ) constrained by terrain pro- ductivity and ruggedness. The map is projected to Albers Equal Area Conic; WGS: 1984; central meridian: 47.03187; standard parallel 1: 20.85766; standard parallel 2: 29.12067; latitude of origin: 24.98916. 10
Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Fig. 6 .— Modeled distribution of Arabian Leopard (Panthera pardus nimr ) constrained by human distur- bance, terrain productivity and ruggedness. The map is projected to Albers Equal Area Conic; WGS: 1984; central meridian: 47.03187; standard parallel 1: 20.85766; standard parallel 2: 29.12067; latitude of origin: 24.98916. Fig. 7 .—Isolation-by-resistance model of cumulative current flow (analogous to probability of gene flow or migration rate) highlights potential corridors between the assumed source and sink populations, using the probabilities of the species final distribution model as conductances to leopard movement. Warmer color predicts higher migration rate normalized to a scale of 0 - 100. Green polygons are assumed source populations. Fig. 8 .—Boxplots of values of our inferred leopard presence and movement intensity at leopard presence records dating from 1881 until 2018. DISCUSSION 11
Leopards progenitors might have started appearing in the Arabian Peninsula from Africa through the Sinai Peninsula, during the late Pliocene or early Pleistocene (Uphyrkina et al., 2001) and Hedges (2000) mentioned that the leopard might have followed the same route, approximately at the same time, as humans. During this period, the Red Sea was already formed (Thompson, 2000). Leopard populations should have spread all over the Arabian Peninsula, shrinking or expanding their ranges due to natural climate change (Burton, 1995). In the southern half of the Arabian Peninsula only the western part of present-day Yemen harbored landscape types suitable for the survival of leopard source populations during a series of glacial maxima (Fig. 9 , Gavashelishvili and Tarkhnishvili, 2016). We hypothesize that the most likely major event in the geological past that could be a key in triggering the known genetic and phenotypic differences between Arabian leopard and the other subspecies by reproductively isolating their populations from each other was a succession of glacial maxima restricting the Arabian population to western Yemen. Our hypothesis about the Yemeni refugium could also be supported by the higher levels of genetic diversity and unique alleles in leopards of Yemeni origin, compared to leopards of the current stronghold – that is, the Dhofar mountains of Oman (Al Hikmani, 2019). In the Holocene warming following the last glaciation suitable landscape types expanded, and so did leopard populations from the Yemeni refugium to the limits suggested by our second model (Fig. 5 ). As humans also expanded in and to the peninsula, grew in numbers and started transforming landscape types through ever-evolving technologies, leopard distribution range has shrunk to the limits suggested by our final model (Fig. 6 ). According to our analyses the current distribution of Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. leopard in the Arabian Peninsula is explained by human disturbance, terrain productivity and ruggedness, which is in agreement with the species habitat requirements in west and central Asia (Gavashelishvili and Lukarevskiy, 2008). Apart from these three explanatory variables snow cover considerably limits the species distribution in west and central Asia. The reason we did not get a strong response to this variable in this study is definitely due to the scarcity of snow cover in the Arabian Peninsula. Fig. 9 . The inferred biomes at a series of glacial maxima during the last glacial period (Gavashelishvili and Tarkhnishvili 2016). The Yemeni refugium – i.e. woodlands and grasslands surrounded by vast desert — must have played a crucial role in survival and evolution of Arabian leopard. Barring human disturbance (Fig. 5 ), our model predicts the leopard has potential areas in central highlands in Palestine, Israel and northwest Saudi Arabia, where its historical presence was confirmed (Hemprich and Ehrenberg, 1833; Lady Anne Blunt, 1881; Doughty, 1888; Carruthers, 1909) mainly along the pilgrimage routes to Makkah in the Hail region and around Madayn Saleh. In comparison with current modeled distribution (Fig. 6 ) the leopard presence in hilly Hijaz region confirms, although historically scares (Gasperetti et al., 1985; Nader, 1989; Harrison and Bates, 1991; Gasperetti & Jackson, 1990). Based on outputs, the habitat is larger and less fragmented westward in Oman and eastward in Yemen. However, geographically limited studies in Jabal Dhofar in western Oman seems to support a good nucleus that is probably due to enforced protection. Our findings show that eastern Yemen should have the species stronghold too and research resources must be concentrated there as well. Conservation issues: There is significant distributional decline of the leopard in range countries due to various factors i.e., habitat degradation and fragmentation due to urbanization, road development, mineral development, agricultural expansion, overgrazing and related activities; unrestricted trapping, poisoning and hunting of leopards, often resulting from livestock depredation or other cause of human-wildlife conflict (Islam et al., 2015; Islam and Boug, 2017, 2018;Fig. 4 ); depletion of natural prey base, particularly declines in Arabian gazelle and ibex populations (Islam et al., 2011; Islam et al., 2015; Islam et al., 2017); insufficient protection despite its full protected status under Saudi Arabia’s laws; and (5) lack of awareness among the general public of the need for protection and conservation of the country’s wildlife, including the endangered Arabian leopard. To restore the species in the wild, range countries need to step up to address these key threats. Habitat degradation and fragmentation: Habitat fragmentation has long been recognized as a major factor responsible for threatened species loss and 12
extinction through two main mechanisms; (a) the decrease of habitat size that directly leads to a decrease of population size; and (b) the isolation of natural habitats which reduces the ability of individuals to disperse between range nuclei (Wilcox & Murphy, 1985; Wilcove et al.,1986; Saunders et al., 1991; Wiens, 1994). It has been documented that it would favor genetic destitution to demographic reductions as documented in subspeciesP.p. orientalis, P.p. kotiya (Uphyrkina et al., 2001). Our model predicts limited habitat left for the leopard, where degradation and fragmentation are important issues to be considered by the range countries to save the species (Nowell & Jackson, 1996; Fahrig, 2003). Although the leopards appear to be tolerant of humans, when they are in close contact with humans, they get killed (Islam et al., 2018). Populations in the species range are too small to maintain stable growth, while protected habitat exist in low percentage and the majority of leopards live outside these protected lands. For example, the mountain of Musandam are marginal habitat for leopard, where prey-base have been exterminated and over-browsing-grazing by livestock, changing agricultural practices and the rapid expansion of roads and house constructions have all contributed to habitat degradation. The model clearly shows very little habitat remains in Jordan, where historically people used traps made of stone to catch leopards in 1999 and the species has been poached and even commercialised alive in part of its current range (Qarqaz & Abu Baker, 2006). Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Saudi Arabia has not been spared from the habitat deterioration and loss for many species including the Arabian Leopard. Habitat loss probably started many centuries ago with tree cutting to answer wood re- quirements of growing iron and copper industries (Collenette, 1999). This was already largely developed in the 16th century. Tree cutting and deforestation was still important in the southern Hijaz Mountains for charcoal production till late 1990s (Biquand et al. , 1990) and continued by 2007, before it was banned by that year to cut trees for charcoal or other purposes. In the last twenty years, governmental policy encour- aged pastoralism extension and agriculture intensification to obtain national self-sufficiency in production of meat and agricultural products (Judas et al. 2004). The Habitat of leopard is greatly affected by con- struction of new tracks and roads in the escarpment that gave way to encroachment on once remote areas. Considerable development of highway construction occurred between 1985 and 1990 (Gasperetti & Jackson, 1990) and continued till date and the majority of western highlands are well connected by tracks or roads, even with a few houses in remote mountains. Along these new access roads, anarchic urbanization was and is still implemented without any Environmental Impact Assessment and/or management plan. Rehabilita- tion of terraces and water supplies with tanks allowed otherwise unsustainable development and intensified encroachment on natural habitat (Judas et al., 2004; Islam et al., 2018). Killing/Poisoning of carnivores: The importance of the output of our model increases if we want to look for the remaining population of the Arabian Leopard in the region and protect them from killing, especially by shepherds. Beside habitat deterioration for the carnivores and prey in the region, the Arabian Leopard faces tremendous threats from people, when they started occupying the same area. Although legally protected, current law enforcement is ineffective, a total of 52 killing of Arabian leopards have been recorded in Saudi Arabia itself (Islam et al., 2018; Al-Johany, 2007; Judas et al., 2006; Jackson et al., 2010) and in other countries similar reports are there too and killing of predators and hanging them on trees or posts is a normal practice in remote areas of the region. Depletion of prey-base: Relation predator-prey is also virtually unknown in Saudi Arabia. Although the subject has been highly debated for different big predator besides leopards, Arabian wolf, Striped hyenas etc (Erlinge et al., 1984; Wright et al., 1994), leopards may select and control wildlife populations. Arabian Leopard and prey populations respond dynamically to one another. Many prey species are facing equal conservation challenges and population declined dramatically over the decades. Certain species such as Hamadrayas Baboon adapted themselves to humans, which created commensalism issues and they carry lethal diseases (Olarinmoye et al., 2016 & 2019). Over time, the two populations cycle up and down in number. Although the diet of the Arabian Leopard is poorly known, and from studies of African leopards, they are 13
considered opportunistic, and have a wide range of prey species within a large panel of size (Schaller, 1972; Bertram, 1982; Hayward et al., 2006; Macaskill, 2009). They are able to kill a cow, but will also eat insects. However, even when large prey is present, leopards will feed in a large part upon small and easy to catch prey, such as small birds, rodents (rock rats and girds) or insects. They often include a large proportion of other smaller carnivore species (Genet, Mongoose, foxes, dogs, and Hyena’s offspring). Individual choice and specialization are a common trait including antelopes, deer, pigs, and primates (Kingdon, 1997). Scat analyses in Oman (Wright, 1999) showed that the main prey species were, by order of importance, the Arabian Gazelle (Gazella gazella ), Nubian Ibex (Capra ibex ), Cape Hare (Lepus capensis ), Rock Hyrax (Procavia capensis ), bird species, Porcupine (Hystrix indica ), Ethiopian Hedgehog (Paraechinus aethiopicus ), small rodents and insects while 14 mammal species were recorded by the camera traps at Jabal Samhan NR that include (Spalton et al., 2006). Human interference, through depletion of prey base and killing by hunters and shepherds, has been suggested as the main cause of decline (Spalton & Al Hikmani, 2006). In Israel/Palestine, the diet of the leopard was recorded mainly comprised of Hyrax and Ibex (90%) and 5% of porcupines (Ilany, 1990). In Saudi Arabia, the diet of the leopard could be mainly constituted of Hyrax, Arabian Mountain gazelle and similar size prey species. Nubian Ibex and gazelles could have been an important part of the diet of leopards in the past, but the range of these ungulates has been significantly reduced; leopards should have Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. had no choice to survive to shift their diet according to prey availability (Judas et al., 2004; Islam et al., 2018). If leopard preys on baboons, it happens at night when they sleep among rocks (Shortridge, 1934 in Kingdon, 1977). Since leopards are known to be opportunistic predators, we can presume that they will also prey on species such as partridges in mountain regions (Ammoperdix heyi, Alectoris melanocephala and A. phiibyi), porcupines, hares and even fish, frogs and turtles that are still abundant in some places (Judas et al., 2004; Islam et al., 2011). Predation upon goat, sheep, young camels and feral ass has been reported (Islam et al., 2018; Biquand, 1989; Biquand & Boug, 1992). As known from Africa, leopards are attracted by domestic dogs that they captured at night around or even inside camps (Haltenorth & Miller, 1985) or South America for Jaguar (Panthera onca, Rabinowitz, 1986). Insufficient protection despite its full protected status under laws: Predators such as the Arabian Leopard is critical for healthy ecosystems, ensuring that a greater variety of species survive and thrive by keeping prey populations in check. As we know, the re-introduction of wolves into Yellow Stone National Park in the United States of America caused trophic cascading effects on flora and fauna of the Park (Smith et al., 2013). If we are proactive, conservation programs are capable of ensuring a positive future for these and other species. Our model shows that Jabal Dhofar (i.e. western parts of Dhofar mountains) in Oman and eastern parts of Dhofar mountains in Yemen are the source. Moreover, our model did not indicate the known eastern population in central Oman as large as its western one, and this might have to do with better protection enforcement (Spalton et al., 2006; Mellon, 2009). Arabian leopard is considered a flagship species throughout its range, and every range country provides protection but according to our model the majority of the population occurred outside the protected areas. Conservation efforts need to be focused towards leopard populations outside the current network of protected areas as well, as the majority of available leopard habitats presently receive no legal protection (Jacobson et al., 2016). In Saudi Arabia, there is no specific reserve for the Arabian Leopard conservation, while hunting is restricted under the National Hunting Law of 1978 #457 under the Wildlife Protected Areas System (Seddon, 1996). All forms of hunting are officially prohibited in all Protected Areas managed by the SWA, but the presence of leopards has been attested from only two of them, which are Ar Raydah Reserve (9 sqkm, established in 1989) in Abha and Jabal As Shada Reserve (50 sqkm established in 2002) in Al Mikhwa states exists in 14
South-western Highlands. Raydah and As Shada reserves are very small to shelter viable Leopard populations (Judas et al., 2004). So, it was highly recommended to protect more areas, where the possibilities of leopard are high or where the leopard persisted in the past (Islam et al., 2014; 2018). Hilly areas with wadis in Yemen is continuous up to Jabal Dhofar in Oman provide a good habitat for the Arabian leopard and 12 are important locations for the leopard within this strip, where leopard persistence is likely and need to be surveyed properly, which are also highlighted in our movement intensity model. In Yemen although there are 10 declared reserves and among them are Jabal Bura valley forest and Dhamar Montane Plains Mahjur Traditional Reserve but leopards have not been recorded in these reserves, while at Wada’a, in Amran district, where the majority of the leopards have been captured before (Stanton et al., 2008) classifies as very poor by our model for the species presence. In 2008 no leopard was recorded (Stanton et al., 2008) and in 2010 intensive camera-trapping in Hawf Protected Area in eastern Yemen was carried out, even using attractive scents but could not detect any leopards (Pittet, 2011). The area where camera-traps were deployed, were outside of our modeled polygons of the inferred source populations. This also emphasizes that the survey effort should be more focused following our findings. Lack of awareness among the general public of the need for protection and conservation of the country’s wildlife, including the endangered Arabian leopard: Public support towards conservation of wildlife is extremely necessary that majority of the wildlife persists outside of the protected areas. It is Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. highly suggested that beside intensive monitoring in modeled areas, range countries should initiate public awareness programs to get support for long-term conservation of the species. Conservation measures proposed: Our models would be beneficial not only to the Arabian Leopard but other biodiversity in general through linkage of science to policy and decision processes. This model would be helpful in future landscape-based planning on known and projected corridors and prioritize policies, and articulate the range of solutions. That is how our model would bring together scientists, public stakeholders and policy makers, and are used as an adaptive management tool to understand complex landscapes that are undergoing short- and long-term change. It is highly recommended to intensify the field search and camera trapping in all the important areas such as western mountains in Oman e.g., Jabal Samhan NR, Jabal Qamar, Jabal al Qara in Dhofar (Spalton & Al Himani 2014), eastern mountain of Yemen: Hawf, and Jadib (Pittet 2011), and locations at western highlands in Saudi Arabia e.g., Wadi Tarj, Wadi Lajab; Jabal Uthrub, Wadi Nauman, remote mountains of Tanomah, Billasmar, Billahmar, Bani Saad) and probably Fiqrah mountain (Islam et al . 2014). We also recommend to carry out field search for leopard in modelled areas and especially corridors. It is important to maintain the integrity of small and no longer viable subpopulations or local nuclei, and the connection between neighboring populations needs to be restored (CMS, 2017). Sometimes, animals move from the nuclei population to other areas and such individuals need adequate migration corridors for dispersing animals. Our corridor study put forward to facilitate landscape-level, large-scale trans-boundary conservation, and the Arabian leopard conservation will be benefitted. These models provide the base for further investigation to conserve the species and we still need to collect detailed information, especially in predicted corridors across the range (Judas et al., 2006; Islam et al., 2011; 2018): (1) population assessment - some studies carried out at Jabal Dhofar in Oman (Spalton and Al Hikmani, 2014); (2) number of individuals per sub-population; (3) range use pattern and home range size; (4) Activity pattern; (5) basic knowledge of habitat requirements; (6) food requirement (prey species); (7) prey availability, dynamics and requirements; (8) relation predator-prey (such as seasonal movements of Ibex, gazelles); (9) competition with other predators (Caracal, Hyena, Wolf); (10) quantification of conflict with man. To assure long term survival of the wild populations, population viability analysis has to be developed to project population trends with regularly updated data. This would require: (1) to understand population dynamics; (2) to study dispersal rates and quantify movements between populations; (3) to establish long-term monitoring’ with regular periodic surveys (camera trapping); (4) to assess genetic pool (determine genetic identity from blood and scats, DNA microsatellite mapping. 15
Since the Arabian Leopard population is so low and many individuals were poisoned, killed, and trapped, the range countries need to have conservation support programs on local as well as regional scale as suggested in the regional and national strategies (Islam et al., 2011, 2014; Breitenmoser et al., 2010) to protect the Arabian Leopard. It requires constant population monitoring; implementation of regional and national conservation strategies; protecting important locations, where the Arabian Leopard still persists and carry out intensive monitoring using camera trapping or ‘track impression pads’ (patches of sand or soft earth placed along movement corridors) based on our findings; our model suggests that the habitat is larger and less fragmented westward in Oman and eastward in Yemen. However, based on geographically limited studies areas in western Oman seems to support a good nucleus that is probably due to enforced protection. Our findings show that eastern Yemen should have the species stronghold too and research resources must be concentrated there as well and areas must be protected; and the last suggestion is to Ex-situ conservation- captive-breeding to safeguard the species in captivity in case it locally extinct. DATA ACCESSIBILITY It is declared that we will deposit data in a public repository, which is used in the modeling and analysis in this paper and the link of data is already been shared with the Journal through email. REFERENCES Posted on Authorea 1 Feb 2020 — CC BY 4.0 — https://doi.org/10.22541/au.158057220.09724014 — This a preprint and has not been peer reviewed. Data may be preliminary. Al Hikmani, H. (2019). Evolutionary Genetics and Conservation of the Critically Endangered Arabian Leopard (Panthera pardus nimr ). Doctor of Philosophy (PhD) thesis, University of Kent., United Kingdom. Al Jumaily, M., Mallon, D. P., Nasher, A .K., & Thowabeh, N. (2006). Status report on Arabian leopard in Yemen. CAT NEWS Special Issue, 1: 20-25. Al-Johany, A. M. H. (2007). Distribution and conservation of the Arabian leopards Panthera pardus nimr in Saudi Arabia. Journal of Arid Environments , 68, 29-23. Beier, P., Majka, D.R., & Spencer, W.D. (2008). Forks in the road: Choices in procedures for designing wildland linkages. Conserv Biol, 22(4), 836–851. Bertram, B.C.R. (1982). Leopard ecology as studied by radio-trackingin Telemetric Studies of Vertebrates . Cheeseman, C.L. and Mitson R.B. Eds. Symp. Zoo1. Soc. Lond. No. 49:341-352. Biquand, S. (1990). The Arabian Leopard in Saudi Arabia. Unpublished annual report. NWRC, Taif, p. 27. Saudi Arabia. Biquand S., Boug, A., & Gaucher, P. (1990). Field reconnaissance survey of southern Hijaz. Unpublished report, NWRC, Taif, 37 pp. Saudi Arabia. Biquand, S., & Boug, A. (1989). Protection of the Arabian Leopard in Saudi Arabia. Unpublished report, NWRC, Taif, Saudi Arabia. Biquand, S., & Boug, A. (1992). An update of leopard status in AI Fiqrah and recommendations for immediate action. Unpublished report, NWRC, Taif. 4 pp., Saudi Arabia. Blunt, L.A., (1881). A Pilgrimage to Nejd : the Cradle of the Arab Race. A visit to the court of the Arab Emir, and our “Persian Campaign”. Vol 1 & 2, London, Murray, Albemarle Street, UK. Boug, A., Islam, M. Z., & Shehri, A. (2009). Captive-breeding of Arabian Leopard Panthera pardus nimr in the Kingdom of Saudi Arabia. Wildlife Middle East 4 (3): 2. Breheny, P., & Burchett, W. (2017). Visualization of Regression Models Using visreg. The R Journal, 9, 56-71. Breitenmoser, U., Breitenmoser C., Mallon D. & Edmonds A. J. (Eds). (2006). Status and Conservation of the Leopard on the Arabian Peninsula. Cat News Special Issue No 1 , IUCN/SSC Cat Specialist Group and Breeding Centre for Endangered Arabian Wildlife. 47 pp. 16
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