Bacterial and Firefly Luciferase Genes in Transgenic Plants: Advantages and Disadvantages of a Reporter Gene
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DEVELOPMENTAL GENETICS 11:224-232 (1990) Bacterial and Firefly Luciferase Genes in Transgenic Plants: Advantages and Disadvantages of a Reporter Gene CSABA KONCZ, WILLIAM H.R. LANGRIDGE, OLOF OLSSON, JEFF SCHELL, AND ALADAR A. SZALAY Institute of Plant Physiology (C.K.),Biological Research Center, Hungarian Acadamy of Sciences, H-6701, Hungary; Max-Planck-Znstitutfur Zuchtungsforschung (C.K.,J.S.), Koln 30, Federal Republic of Germany; Plant Molecular Genetics and Plant Biotechnology Centre and Department of Cell Biology (W.H.R.L.,A.A.S.), Medical Sciences Building, University of Alberta, Edmonton, Alberta, Canada; and Department of Plant Physiology (O.O.), University of Umea, Umea, Sweden ABSTRACT Genes encoding light-emitting therefore has been used widely a s a bioluminescent luciferase were recently isolated from luminous indicator for metabolic assays (see below). The cata- marine bacteria and fireflies. Expression of lu- lytic reaction is initiated by the formation of a n en- ciferase genes in diverse organisms is a unique zyme-bound luciferin-adenylate. This is followed by a way for studying gene expression by simple and change in protein conformation which provides a hy- sensitive measurement of light. Recent advances in drophobic active site for deprotonation and hydroper- application of luciferase reporter genes are re- oxide addition a t the C4 position of luciferin. Subse- viewed and documented by examples of in vivo quent decarboxylation and splitting of the linear visualization of their expression in transgenic peroxide leads to formation of COz, H20, AMP, and a n plants. excited, dianionic form of oxyluciferin. In excess of sub- strate the reaction produces a quick flash of light pro- Key words: lux and luc reporter genes, light portional to the quantity of the enzyme. After the emission, gene expression, single photon imaging flash, a n extended low-light emission occurs indicating in vivo a slow-rate dissociation of the product. The quantum yield of firefly luciferase is 0.88, the highest among known luciferases. INTRODUCTION All fireflies use the same substrates but diverse spe- cies emit different colours of light varying from yellow Light-emitting organisms attracted the attention of (582 nm) to green (522 nm). Low pH and divalent cat- scientists throughout history from Caius Plinius (23- ions shift the light emission to red, indicating that the 79 A.D.) to E.N. Harvey [Harvey, 19571. The terms of conformational change of the enzyme and alterations luciferase and luciferin were first applied by Dubois in in its structure play a n important role in determining 1885 to describe light-emitting proteins and their sub- the energy of the excited product and thus the colour of strates extracted from jelly fishes. Luciferases and lu- emitted light [DeLuca, 1976, 19781. Recently, lu- ciferins were purified and characterized from diverse ciferase cDNAs were cloned from the Japanese firely species of fireflies, beetles, marine bacteria, molluscs, [Masuda et al., 19891 and from beetles [Wood et al., medusas, fishes, and earthworms. A schematic classi- 19891 which produce different colours of light when fication of luciferins shows that most eukaryotic lu- expressed in E. coli. The identification of amino acid ciferases use heterocyclic compounds as substrates exchanges between these enzymes should pinpoint pep- while in marine bacteria and earthworms, photogenic tide domains involved in enzyme-substrate interaction, substrates are aliphatic aldehydes [DeLuca, 1978; De- a s well as open the way to engineer novel luciferases. Luca and McElroy, 19861. From an evolutionary point of view it is intriguing that the reaction leading to luciferin adenylation is FIREFLY LUCIFERASE analogous to those involved in the activation of amino Luciferase isolated from the North American firefly, Photinus pyralis (Photinus, 1uciferin:oxygen 4-oxy- doreductase, EC. 1.13.12.7; 62 kD) catalyzes the OxY- h i v e d for publieation October 18,1989; accepted October 28,1989. dative decarboxylation of luciferin, a 8hydroxy- benzothiazole, to 0xyluciferin in the presence of ATP, Address reprint requests to Csaba Koncz, Max-Planck-Institut fiir Mg2' and 02.The enzyme is specific for ATP and Ziichtungsforschung, D-5000 K6ln 30, Federal Republic of Germany. O 1990 WILEY-LISS, INC.
LUCIFERASE GENES IN TRANSGENIC PLANTS acids and fatty acids. Furthermore, luciferase can also of reduced FMN and long-chain aldehydes with molec- catalyze the addition of adenylated dihydroluciferin to ular oxygen to yield FMN, H20, corresponding carbox- CoA, in a reaction similar to that catalyzed by fatty ylic acids, and blue-green light (490 nm). The reaction acyl CoA synthases. Since this reaction is CoA-specific, can be considered as a branch of an electron-transport it is probably not a coincidence that the enzyme shows pathway which shunts electrons to oxygen a t the level a significant homology to other CoA-specific enzymes, of flavin. The enzymatic reaction is unusual because it such as plant 4-coumarate-CoA ligase [Schroeder, results in long-life intermediates. A key intermediate 19891. is an enzyme-bound 4a-hydroperoxide (FMN-OOH) In Photinus the luciferase is encoded by a transcript whose reaction with the aldehyde probably leads to for- of about 1,800 nt, which is synthesized from a single mation of a hydroxy-flavin emitter in its singulet ex- copy luc gene containing six introns [deWet et al., 1985, cited state. Due to quick oxidation of free FMNH, and 19871. Localization of luciferase protein in photocytes to long-time relaxation of the enzyme from its altered of firefly lantern, as well as in animal and plant cells, conformational state, only one catalytic cycle is possi- indicated that the enzyme is targeted to peroxisomes ble. Therefore the light production is strictly propor- by a peptide signal (PTS) consisting of the last three tional to the amount of enzyme in excess of FMNH, C-terminal amino acids Lys-Ser-Leu [Keller et al., and aldehyde substrate. The quantum yield of bacterial 1987; Gould et al., 1987, 1989; Gould and Subramani, luciferase is 0.1, equivalent with 60 ATP per photon. 19881. The aldehyde-binding site of the luciferase a-subunit contains an essential sulfhydryl group close to the ap- ANALOGIES BETWEEN EUKARYOTIC subunit interphase. The non-catalytic P-subunit is re- LUMINESCENCE SYSTEMS quired for proper folding and conformational change of the a-subunit during interaction with the flavin mol- Formation of a linear peroxide at various positions of ecule. Structural mutations in both enzyme subunits, eukaryotic luciferins appears to be a common event in as well as various flavin analogs, can alter the emis- most luciferase reactions producing C02 and H20. Al- sion spectra between 490 and 535 nm [Hastings, 1978; though the excited oxyluciferin is always the primary Kurfiirst et al., 1984; Lee et al., 1988; Aboukhair et al., emitter it is common that the energy is transmitted to 1985; Paquette et al., 1988; Chen and Baldwin, 19891. a secondary emitter, i.e., protein-bound flavin chro- Ln Photobacterium strains a lumazine protein forms mophore. Luminescence systems are frequently regu- a complex with luciferase and, by energy transfer from lated by the nerve net of organisms. When disturbed, the flavin to the secondary emitter 6,7-dimethyl-8-(l1- cypridinas produce a blue luminescence by ejecting lu- D-ribityll-lumazine, blue light (475 nm) is emitted [Lee ciferase and luciferin from separate glands into seawa- et al., 19891. In Vibrio fischeri strain Y-1 energy trans- ter. A more complicated network, evolved in the antho- fer occurs from excited flavin intermediates to a flavin- zoan coelenterate Renilla, involves four proteins. A containing secondary emitter protein, termed yellow luciferin sulfokinase catalyzes the synthesis of lu- fluorescent protein (YFP), causes a yellow shift (534 ciferin from luciferyl sulfate and 3',5'-diphosphoade- nosine. Luciferin is oxydized to oxyluciferin and C02 nm) in the emission of light. In the presence of NAD(P)H-FMN oxydoreductase, an enzyme supplying by luciferase. The energy is transmitted to a luciferase- reduced FMN in luminous bacteria, the addition of associated green fluorescent protein (GFP). The chro- YFP does not only shift the colour but also increases mophore is enclosed in vesicles and emits green light the intensity of total light emitted three- to four-fold only when a luciferin-binding protein (BP-LH,) is ac- [Daubner et al., 19871. A further accessory enzyme of tivated by binding of Ca2+ upon excitation of nerves bacterial bioluminescencesystems is a fatty acid reduc- [Cormier, 19781. In the hydromedusa Aequorea both tase which is co-induced with the luciferase and recy- luciferin and Ca2+ are bound by a single protein, ae- cles fatty acid products to substrate aldehydes (usually quorin, that catalyzes the formation of oxyluciferin. converts tetradecanonic acid to tetradecanal). cDNA of blue light emitting aequorin has been isolated Bacterial luciferase genes were identified by trans- . . from Aequorea victoria and expressed in E. coli [Inouye et al., 1986; Prasher et al., 19861. poson insertional mutagenesis and by hybridization to mixed oligonucleotide probes of known peptide se- quences elas as et al., 1982; Cohn et al., 1983:~aldwin BACTERIAL LUCIFERASES et al., 1984; Engebrecht and Silverman, 1984; Enge- Luminous marine bacteria are ubiquitous and occur brecht et al., 1983; Delong et al., 19871. LuCDABE either in planktonic forms or as symbionts within light genes are located in a single operon (R)in Vibrio organs of fishes and squids. Luciferases from Vibrio harueyi, V. fischeri, and Photobacterium phosphoreum. harveyi, V. fisheri, and Photobacterium phosphoreum L u C , D, and E encode fatty acid reductase (54 kD), were extensively characterized [Ziegler and Baldwin, acyl-transferase (34 kD), and acyl-protein synthase (42 1981; Hastings and Nealson, 19771. kD) subunits of fatty acid reductase, respectively, All bacterial luciferases are heterodimeric (ap), while the a- and P-subunits of luciferase (40 and 37 kD) mixed function oxidases which catalyze the oxidation are synthesized from genes l u A and B [Cohn et al.,
226 KONCZ ET AL. 1985; Johnston et al., 1986; Haygood and Cohn, 1986; aldehydes can be monitored by firefly and bacterial Miyamoto et al., 1985, 1987, 1988; Foran and Brown, luciferases. Special features of other luminescent pro- 1988; Illarionov et al., 1988; Mancini et al., 19881. In teins, such as aequorin also allow one to measure Photobacteriumphosphoreum an additional gene, luxF, Ca2+-mediatedreactions. The range of in vitro assays was identified between luxB and E and shown to result extends from clinical, microbial detection of pathogens from a duplication of the luxB gene [Soly et al., 19881. to biochemical assays of enzymes, cofactors, and sub- Homology between luxA and luxB suggests that they strates, to mutagenicity tests, to detection of steroid also evolved by an earlier gene duplication event [Bald- hormones and insect pheromones, and to the measure- win et al., 19791. Although overall homology exists be- ment of membrane transport and organellar functions tween lux genes of diverse species, protein complemen- [Weinhausen and De Luca, 1982; Campbell et al., 1985; tation studies between luciferase subunits of Vibrw Ulitzur, 1986; Kricka, 19881. Recent advances in selec- and Photobacterium species demonstrated significant tive modification of a reactive sulfhydryl group of bac- differences [Meighen and Bartlet, 19801. In Vibrio fis- terial luciferase and in the synthesis of firefly lucifer- cheri gene luxI, located immediately upstream of l a c , ins derivatized a t the 6-position led to the general belongs to the 1uxCDABE operon. A gene located fur- application of luciferases in immunoassays, protein im- ther upstream, luxR, constitutes an independent op- muno-blotting, and non-radioactive nucleic acid hy- eron (L) which is transcribed in the opposite direction. bridization [Baldwin et al., 1986; Haubner and Geiger, Expression of lux operons is regulated a t the levels of 19881. both transcription and translation. l w R encodes a pos- itive regulatory protein while lux1 is responsible for the LUCIFERASE REPORTER GENES synthesis of an autoinducer, N-(P-ketocaproy1)-homo- It has been realized early that a number of sensitive serine lactone. lux gene expression correlates with the assays, such as determination of the concentration of density of cell cultures. Initially the luxR protein is O,, anaesthetics, antibiotics, mutagens, etc., can be constitutively produced and the luxCDABE operon is carried out in vivo by expression of luciferases in living expressed only a t a low level. At higher cell densities cells [Hastings and Nealson, 19771. an increased concentration of luxR protein, bound to Cloning of luciferase genes opened the way to novel autoinducer, leads to further activation of the 1uxICD- applications in molecular biology. Gene fusion is a gen- ABE operon and to a burst of autoinducer synthesis eral approach to study the temporal and spatial regu- and light production. Later on the concentration of lation of gene expression and to delineate regulatory luxR protein becomes limiting because the luxR pro- DNA sequences both in procaryotic and eucaryotic or- tein-autoinducer complex inhibits the translation of ganisms. Reporter genes, such as P-galactosidase (lac), luxR transcript. lux operons are also regulated by cat- p-glucuronidase (gus), chloramphenicol acetyltrans- abolic repression because their promoters contain ferase (cat), and aminoglycoside phosphotransferase cAMP/CRP binding sites [Dunlap and Greenberg, (aph(3')II),are fused to transcriptional regulatory ele- 1985; Dunlap, 1989; Engebrecht and Silverman, 1987; ments by construction of chimaeric genes which are Devine et al., 19881. At low 0, concentrations the syn- then transformed into cells of target organisms. The thesis of luciferase is limited in Vibrio harveyi and expression of reporter gene fusions is followed in tran- Photobacterium leiognathi. In contrast, the synthesis of sient assays or in stable transformants either by in luciferase is not influenced by oxygen in Vibrio fischeri vitro enzyme assays or by histological staining. Alter- and Photobacterium phosphoreum which results in ac- natively, promoterless reporter genes are linked to the cumulation of luciferase at low 0, tensions. Low osmo- ends of transposable elements such that their insertion larity stimulates, whereas high iron concentrations re- into genes will generate transcriptional or transla- press bacterial luminescence [Dunlap, 1985; Haygood tional gene fusions. and Nealson, 19851. Engebrecht et al. [I9851 used the latter technique for isolation of gene fusions to the luxCDABE operon by mini-Mu transposon insertional mutagenesis in bacte- LUCIFERASE ASSAYS ria and demonstrated that light production provides a Light can be monitored visually, photographically, simple and sensitive in vivo indicator of gene expres- or electronically at different sensitivities. A great va- sion. A systematic development of luciferase gene con- riety of methods for detection and measurement of bi- structs and light assays followed this initial report. A oluminescence have been described [Van Dyke, 19851. similar transposon, Tn4431, and diverse plasmid con- Following pioneering work by several laboratories on structs were designed to visualize gene expression in the purification and immobilization of luminescent en- Xanthomonas during its pathogenic invasion of plant zymes, luciferases found a wide range of applications in tissues [Shaw et al., 1986, 1987, 19881. Expression of most areas of life sciences. A particular advantage of luxAB genes in E. coli was successfully visualized by luciferase assays is their ease, sensitivity, and effi- exogenous addition of n-decanal demonstrating that ciency. Practically any reaction which can be linked to volatile aldehyde substrates of bacterial luciferase are measurement of ATP, NAD(P), FMN, fatty acids, or promptly taken up by living cells and that luxAB struc-
LUCIFERASE GENES IN TRANSGENIC PLANTS tural genes are as effective reporters as the full-length Luxp subunits has been confirmed in plants, there was lux operon [Baldwin et al., 19861. Subsequently expres- some question regarding protease sensitivity of the cat- sion of luxAB genes was demonstrated in filamentous alytic a-subunit. Furthermore, inefficient in vitro as- cyanobacteria [Schmetterer et al., 19861, in Bacillus sembly of separately folded luciferase subunits led to subtilis [Karp, 19891, and in Pseudomonas, Agrobacte- the assumption that coordinate folding of subunits dur- rium, and Rhizobium [Legocki et al., 1986; Boivin et al., ing translation in bacteria would be essential. Since 19881. Various vectors were constructed for the study of transcription and translation are coupled in bacteria, promoters and transcription terminators in bacteria this model predicted poor assembly of bacterial lu- [Carmi et al., 1987; Peabody et al., 19891. In order to ciferase in eukaryotic systems. Other concerns pre- monitor gene activation in symbiotic bacteroids of dicted that the concentration of FMN would be limiting rhizobia, luxAB genes were fused to a regulated pro- because FMN is enzyme-bound or enclosed in cell com- moter of nifD [O'Kane et al., 19881. This offered a good partments in eucaryotes. In contrast, the firefly lu- model system to adjust several methods for visualiza- ciferase substrate ATP is ubiquitous in eukaryotic tion of light-emitting tissues and cells inside the plant cells. Comparisons of kinetic parameters and quantum body (Fig. 1). yields of luciferases also favoured the firefly enzyme Expression and stability of firefly luciferase in E. which needs only one ATP per emitted photon in con- coli has been explored by the synthesis of N-terminal trast to the requirement of 60 ATP for the bacterial Cro-luciferase fusion proteins by using partial luc enzyme. On the other hand, it is known that luciferin is cDNA clones. However, attempts to monitor light- taken up inefficiently by living cells. In order to en- emission mediated by the firefly enzymes in vivo failed hance the uptake, cells have to be treated by DMSO, because bacteria did not take up the luciferin substrate low pH, and high concentrations of luciferin, all of [deWet et al., 19851. which reduce their viability. Furthermore, the trans- port of the firefly enzyme to peroxisomes further re- EXPRESSION OF LUCIFERASE GENES IN duces the availability of the substrate. TRANSGENIC PLANTS Application of luciferase genes in eucaryotes is still ADVANCES in its infancy, but will certainly lead to a burst of novel Recent developments in the use of both reporter experimental systems soon. Among eukaryotic organ- genes provided some answers to the initial questions. isms the expression of luciferase genes was first dem- The firefly luciferase gene has been used successfully onstrated in plants. Linked to the promoter of the Cau- for the analysis of promoters [Ow et al., 19871, tran- liflower Mosaic Virus 35s transcript, the firefly scription terminator signals, and translational en- luciferase gene was introduced into carrot protoplasts hancer elements in plants [Gallie et al., 19891. The luc by electroporation and into tobacco by Agrobacterium- gene was also exploited to optimize transient assays mediated transformation. In addition to in vitro mea- and to confirm stable transformation in plants [Ballas surements of luciferase activity in transient assays, the et al., 1988; Gupta et al., 1988; Ellis et al., 1989; Ko- luciferase-mediated light emission was visualized by mari, 19891, mammalian cells [deWet et al., 1987; autoradiography of cell suspensions and by contact ex- Nguyen et al., 1988; Maxwell and Maxwell, 1988; posure of a transgenic plant to a photographic emulsion Williams et al., 19891, Dictyostelium [Howard et al., [Ow et al., 19861. 19881 and transgenic mice [DiLella et al., 19881. Inser- To study the expression of bacterial luciferase genes tion of the luc gene into a vaccinia virus genome illus- in plants, luxA and l u B coding sequences were dis- trated possible applications of the luc reporter gene for sected from the lux operon and fused separately to 1' the monitoring of viral gene expression and virus dis- and 2' promoters of mannopine synthase genes. lux semination in cell cultures and in tissues of infected gene expression vectors were transformed into carrot animals [Rodriguez et al., 19881. The sensitivity of the and tobacco cells. Light emission and detection of lu- in vitro luciferase assay was estimated to be 100- to ._ ciferase subunits showed that assembly of functional luciferase occurred in the cytoplasm of transformed 1,000-fold higher than that of P-galactosidase or CAT. When luciferin was supplied in low pH buffer with plant cells [Koncz et al., 19871. DMSO, this sensitivity permitted photographic detec- tion of light in bacterial colonies as well as in animal PROBLEMS and in plant tissues. Computer-enhanced video imag- These initial reports incited much debate about fa- ing of individual cells was also achieved [Wood and vourable and disadvantageous traits of both lu- DeLuca, 1987; Gallie et al., 1989; Maly et al., 19881. ciferases. It was initially thought that the bacterial A step forward in the systematic development of bac- system would not be useful for application in the eu- terial luciferase reporter genes involved a functional karyotic cells because expression of two genes is re- analysis of luxA and luxB coding sequences. It was quired for the synthesis of an active enzyme. Although demonstrated that, although the N-terminal domain of the stability of individually synthesized Luxa and the a-subunit is required for enzyme activity, both 5'
228 KONCZ ET AL. and 3' transcriptional and translational fusions to the luxA gene can be generated [Olsson et al., 19891. luxA and luxB genes introduced into bacteria on separate plasmids expressed active luciferase in a n amount equal to that produced by cells carrying linked luxAB genes [Gupta et al., 1985; Olsson et al., 19881. In cells in which the P-subunit is present in excess, light produr- tion is correlated with the limiting concentration of the a-subunit, indicating that luxA alone can be employed as a reporter gene. A similar analysis showed that transcriptional and translational gene fusions can also be generated by using both 5' and 3' ends of the luxB gene [Sugihara and Baldwin, 19881. These observations led to the construction of 1uxA-B and luxB-A gene fusions encoding functional mono- meric bacterial luciferases [Olsson et al., 1989; Boylan et al., 19891 which were expressed in bacterial, yeast, and plant cells. Analysis of the correlation between structure and activity of monomeric luciferases indi- cated that the length of the interconnecting peptide region plays an important role in determining proper folding of the fusion enzymes. Luciferases displaying different thermal stability and light emission proper- ties were crystallized for comparison of their structure to that of the native enzyme [Swanson et al., 1985; Escher et al., unpublished]. It was demonstrated that both binary and fused lux genes can be used for precise and reproducible in vitro assays and for in vivo visualization of temporal and spatial regulation of gene expression in plants [Lang- ridge et al., 19891 (Fig. 2). Recently, due to a great interest in the identification and isolation of plant reg- ulatory genes, we developed a technology to screen large numbers of plants expressing luciferase reporter gene fusions. T-DNA vectors carrying a t their integra- tion borders either fused l w A B or promoterless luxA and linked chimaeric luxB gene cassettes were intro- duced into tobacco and Arabidopsis by Agrobacterium- mediated transformation. Since the T-DNA is fre- quently integrated into transcribed loci of the plant genome [Koncz et al., 19891, transcriptional lux gene fusions can thus be isolated a t high frequencies. The expression of T-DNA-tagged genes can be followed con- tinuously during plant development by in vivo visual- ization of the expression of lux gene fusions in diverse tissues of transgenic plants (Fig. 2) [Redei GP, Univ. Missouri, personal comm.]. PROSPECTIVES The results described above clearly demonstrate that both luciferase reporter gene systems can contribute very significantly to various fields of molecular and Fig. 1. Visualization of bioluminescence in soybean nodules and in cellular biology. Some trends for the improvement of single nodule cells infected by Bradyrhizobium japonicum containing a nifD-lwAB gene fusion. Top (left): Nodules under normal illumi- luciferase reporter genes and for their application are nation. Top (right): Bioluminescence recorded on IS0 400 .Ekta- already predictable. Deletion analysis of the firefly luc chrome film. Middle: Nodule cells under normal illumination. Bot- gene showed that the removal of C terminal amino tom: Visual image of light-emitting cells recorded by LDG low-light acids does not influence enzyme activity but converts video microscope system [O'Kane et al., 19881.
LUCIFERASE GENES IN TRANSGENIC PLANTS Fig. 2.
230 KONCZ ET AL. Fig. 2. Visualization of lux gene expression in transgenic plants, Baldwin TO, Holzman TF, Holzman R (1986): Active center-based organs, and tissues by a photon-counting video camera-photomulti- immuno-assay approach using bacterial luciferase. In DeLuca M, plier system. P a n e l A: Light image. P a n e l B: Recorded image of light McElroy WD (eds): "Bioluminescence and Chemiluminescence." emission. Top: Tobacco leaf expressing 1wA and luxB genes driven by Methods Enzymol 133:248-264. 1' and 2' promoters of mannopine synthase genes (left) and leaf of a Ballas N, Zakai N, Friedberg D, Loyter A (1988): Linear forms of non-transformed tobacco plant (right). Middle: Stem section of a to- plasmid DNA are superior to supercoiled structures as active tem- bacco plant expressing mas promoter-lux gene fusions. Bottom: Ex- plates for gene expression in plant protoplasts. Plant Mol Biol 11: pression of a lux gene fusion in a transgenic Arabidopsis thaliana 517-527. plant. 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